Wall clock time and date at job start Mon Mar 30 2020 23:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46505 * 109.47198 * 2 1 4 4 C 1.34219 * 125.73715 * 125.31604 * 3 2 1 5 5 C 1.38131 * 107.40422 * 180.14391 * 4 3 2 6 6 C 1.47287 * 126.42570 * 179.83708 * 5 4 3 7 7 O 1.21526 * 119.99598 * 179.68536 * 6 5 4 8 8 O 1.34750 * 120.00320 * 359.68812 * 6 5 4 9 9 C 1.45200 * 117.00219 * 180.02562 * 8 6 5 10 10 H 1.08991 * 109.47016 * 29.99921 * 9 8 6 11 11 C 1.50699 * 109.47040 * 150.00059 * 9 8 6 12 12 H 1.07999 * 120.00347 * 34.94834 * 11 9 8 13 13 C 1.37879 * 119.99811 * 214.94773 * 11 9 8 14 14 N 1.31511 * 120.00329 * 184.80622 * 13 11 9 15 15 Si 1.86800 * 119.99678 * 4.80452 * 13 11 9 16 16 H 1.48500 * 109.47063 * 84.69113 * 15 13 11 17 17 H 1.48509 * 109.47014 * 204.68230 * 15 13 11 18 18 H 1.48492 * 109.47455 * 324.68325 * 15 13 11 19 19 C 1.53005 * 109.46707 * 269.99853 * 9 8 6 20 20 C 1.53001 * 117.50088 * 351.85102 * 19 9 8 21 21 C 1.52999 * 117.50173 * 60.51592 * 19 9 8 22 22 C 1.41336 * 107.14449 * 359.57159 * 5 4 3 23 23 C 1.50700 * 125.99246 * 180.26473 * 22 5 4 24 24 N 1.30430 * 108.01613 * 0.26837 * 22 5 4 25 25 H 1.08997 * 109.46991 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46851 * 299.99664 * 1 2 3 27 27 H 1.09000 * 109.47173 * 59.99593 * 1 2 3 28 28 H 1.09003 * 109.47052 * 240.00449 * 2 1 3 29 29 H 1.08997 * 109.47594 * 120.00699 * 2 1 3 30 30 H 1.07995 * 126.30349 * 0.02562 * 4 3 2 31 31 H 0.96998 * 120.00295 * 180.02562 * 14 13 11 32 32 H 1.09003 * 115.54413 * 206.18313 * 19 9 8 33 33 H 1.08998 * 117.50121 * 215.00070 * 20 19 9 34 34 H 1.08995 * 117.49718 * 0.02841 * 20 19 9 35 35 H 1.08996 * 117.49619 * 359.97219 * 21 19 9 36 36 H 1.08993 * 117.49993 * 144.99308 * 21 19 9 37 37 H 1.08994 * 109.47691 * 90.00170 * 23 22 5 38 38 H 1.09012 * 109.47240 * 210.00457 * 23 22 5 39 39 H 1.08997 * 109.47500 * 329.99794 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8735 1.9104 0.8890 5 6 3.0713 3.2312 0.5364 6 6 3.9319 4.2028 1.2325 7 8 4.0248 5.3405 0.8153 8 8 4.6164 3.8303 2.3318 9 6 5.4443 4.8402 2.9666 10 1 5.0058 5.8246 2.8034 11 6 5.5259 4.5656 4.4461 12 1 5.5395 3.5476 4.8065 13 6 5.5832 5.6140 5.3397 14 7 5.7496 5.3764 6.6225 15 14 5.4247 7.3720 4.7283 16 1 3.9877 7.7278 4.6118 17 1 6.0859 8.2916 5.6888 18 1 6.0744 7.4942 3.3987 19 6 6.8495 4.8012 2.3624 20 6 7.1757 3.6522 1.4062 21 6 6.9810 5.0696 0.8619 22 6 2.2976 3.4737 -0.6213 23 6 2.2057 4.7797 -1.3676 24 7 1.6770 2.3690 -0.9305 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8935 -0.5139 0.8899 30 1 3.3227 1.3984 1.7270 31 1 5.7895 6.1140 7.2512 32 1 7.6497 5.1598 3.0099 33 1 8.1905 3.2549 1.4245 34 1 6.3891 2.9243 1.2072 35 1 6.0664 5.2736 0.3051 36 1 7.8676 5.6048 0.5222 37 1 2.9772 4.8138 -2.1368 38 1 1.2239 4.8636 -1.8337 39 1 2.3494 5.6066 -0.6721 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518001493.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:53:10 Heat of formation + Delta-G solvation = -9.890364 kcal Electronic energy + Delta-G solvation = -21970.123766 eV Core-core repulsion = 18686.650635 eV Total energy + Delta-G solvation = -3283.473131 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.50947 -41.08036 -38.18898 -36.47572 -35.72687 -34.89263 -32.50066 -31.48365 -30.40773 -28.75403 -25.47574 -24.59527 -23.45680 -23.19749 -22.09323 -20.83746 -20.48424 -19.31057 -18.29970 -17.93106 -17.67392 -16.94009 -16.56631 -15.94892 -15.59934 -15.35030 -15.05186 -14.77439 -14.53243 -14.10521 -13.98365 -13.70156 -13.32486 -13.25717 -13.18588 -13.00607 -12.93356 -12.84401 -12.35959 -12.30892 -12.02262 -11.92031 -11.82722 -11.39424 -11.34210 -10.96819 -10.71860 -10.54907 -10.40008 -9.78088 -8.43807 -6.51803 0.37847 0.98325 1.27247 1.31384 1.33284 1.43405 2.10299 2.23337 2.24002 2.89200 3.09085 3.29799 3.71717 3.94347 4.00984 4.07496 4.11477 4.14210 4.17784 4.26477 4.36842 4.48878 4.68025 4.74338 4.78079 4.78778 4.80869 4.88410 4.95024 4.99653 5.10172 5.22954 5.24277 5.31519 5.45789 5.50338 5.75177 5.85656 6.22672 6.48577 6.56488 7.05032 7.18626 8.71206 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020099 B = 0.005157 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.768817 B = 5428.342776 C = 5715.610756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.114 3.886 3 N -0.351 5.351 4 C 0.142 3.858 5 C -0.310 4.310 6 C 0.529 3.471 7 O -0.546 6.546 8 O -0.352 6.352 9 C 0.224 3.776 10 H 0.036 0.964 11 C -0.520 4.520 12 H 0.051 0.949 13 C 0.039 3.961 14 N -0.923 5.923 15 Si 0.921 3.079 16 H -0.271 1.271 17 H -0.269 1.269 18 H -0.250 1.250 19 C -0.174 4.174 20 C -0.158 4.158 21 C -0.193 4.193 22 C 0.124 3.876 23 C -0.075 4.075 24 N -0.314 5.314 25 H 0.105 0.895 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.106 0.894 29 H 0.131 0.869 30 H 0.215 0.785 31 H 0.275 0.725 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.941 -9.908 -15.112 19.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.005 4.005 3 N -0.128 5.128 4 C -0.012 4.012 5 C -0.323 4.323 6 C 0.376 3.624 7 O -0.439 6.439 8 O -0.268 6.268 9 C 0.170 3.830 10 H 0.054 0.946 11 C -0.558 4.558 12 H 0.069 0.931 13 C -0.162 4.162 14 N -0.561 5.561 15 Si 0.745 3.255 16 H -0.197 1.197 17 H -0.193 1.193 18 H -0.174 1.174 19 C -0.193 4.193 20 C -0.195 4.195 21 C -0.229 4.229 22 C -0.043 4.043 23 C -0.133 4.133 24 N -0.136 5.136 25 H 0.124 0.876 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.124 0.876 29 H 0.149 0.851 30 H 0.232 0.768 31 H 0.084 0.916 32 H 0.120 0.880 33 H 0.128 0.872 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.125 0.875 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.746 -10.250 -15.832 20.389 hybrid contribution 0.602 1.374 1.033 1.821 sum -7.144 -8.876 -14.799 18.677 Atomic orbital electron populations 1.22031 0.93068 1.04432 1.02334 1.22355 0.96764 0.74656 1.06681 1.48947 1.32964 1.11543 1.19369 1.23644 0.90375 0.92861 0.94305 1.19561 1.13039 0.95098 1.04618 1.20503 0.77182 0.86247 0.78471 1.90671 1.64654 1.21959 1.66657 1.86639 1.55867 1.45281 1.39023 1.20110 0.85473 0.86984 0.90413 0.94583 1.20822 1.51520 0.94721 0.88700 0.93092 1.25546 0.93362 1.02671 0.94584 1.69946 1.49216 1.34088 1.02869 0.86110 0.79497 0.80266 0.79660 1.19661 1.19350 1.17389 1.23013 0.98757 1.05584 0.91950 1.22859 1.02779 0.91193 1.02638 1.23264 1.03617 0.99785 0.96281 1.22712 0.92468 0.96031 0.93080 1.20352 1.03871 0.89537 0.99591 1.77048 1.25019 0.96862 1.14641 0.87599 0.93113 0.92659 0.87617 0.85065 0.76835 0.91574 0.87959 0.87208 0.89359 0.89227 0.87518 0.89266 0.89162 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 10.09 71.98 0.73 -1.23 16 2 C 0.11 1.43 7.21 86.38 0.62 2.05 16 3 N -0.35 -8.05 3.65 -346.24 -1.26 -9.31 16 4 C 0.14 3.75 11.29 84.30 0.95 4.70 16 5 C -0.31 -10.58 6.13 -20.16 -0.12 -10.70 16 6 C 0.53 22.10 6.89 70.20 0.48 22.59 16 7 O -0.55 -24.60 12.00 19.75 0.24 -24.37 16 8 O -0.35 -16.14 8.22 -56.60 -0.47 -16.61 16 9 C 0.22 11.27 2.07 29.85 0.06 11.33 16 10 H 0.04 1.93 4.32 -2.39 -0.01 1.92 16 11 C -0.52 -29.97 9.22 25.60 0.24 -29.73 16 12 H 0.05 3.20 8.06 -2.91 -0.02 3.18 16 13 C 0.04 2.26 5.47 84.66 0.46 2.72 16 14 N -0.92 -55.68 13.96 21.45 0.30 -55.38 16 15 Si 0.92 44.67 26.98 68.60 1.85 46.53 16 16 H -0.27 -13.09 7.11 99.48 0.71 -12.39 16 17 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 18 H -0.25 -11.80 6.83 99.48 0.68 -11.12 16 19 C -0.17 -7.70 5.69 -10.79 -0.06 -7.76 16 20 C -0.16 -5.75 9.79 30.62 0.30 -5.45 16 21 C -0.19 -7.26 9.86 30.62 0.30 -6.96 16 22 C 0.12 3.85 7.27 43.53 0.32 4.17 16 23 C -0.08 -2.02 9.92 71.24 0.71 -1.31 16 24 N -0.31 -8.82 12.33 -46.65 -0.58 -9.40 16 25 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.11 1.02 8.14 -2.39 -0.02 1.01 16 29 H 0.13 0.90 8.06 -2.39 -0.02 0.88 16 30 H 0.22 4.52 8.06 -2.91 -0.02 4.50 16 31 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 32 H 0.10 4.61 8.10 -2.39 -0.02 4.59 16 33 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 34 H 0.09 3.24 6.88 -2.39 -0.02 3.23 16 35 H 0.09 3.64 5.38 -2.39 -0.01 3.63 16 36 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 37 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 39 H 0.08 2.38 6.55 -2.39 -0.02 2.37 16 Total: -1.00 -72.26 327.93 6.10 -66.16 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 1.03 Total: 17.97 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: 4.98 Total: -15.59 kcal Atomic # 7 Polarization: -72.55 SS G_CDS: -1.54 Total: -74.09 kcal Atomic # 8 Polarization: -40.75 SS G_CDS: -0.23 Total: -40.98 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.85 Total: 46.53 kcal Total: -72.26 6.10 -66.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518001493.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.273 kcal (2) G-P(sol) polarization free energy of solvation -72.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds