Wall clock time and date at job start Mon Mar 30 2020 23:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47183 * 2 1 4 4 C 1.34957 * 126.03329 * 124.97448 * 3 2 1 5 5 C 1.35317 * 107.74055 * 179.97438 * 4 3 2 6 6 C 1.50701 * 126.03591 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47387 * 269.97799 * 6 5 4 8 8 O 1.20822 * 119.99479 * 359.97438 * 7 6 5 9 9 O 1.34230 * 119.99652 * 180.02562 * 7 6 5 10 10 C 1.45205 * 116.99274 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47139 * 329.99118 * 10 9 7 12 12 C 1.50704 * 109.46586 * 209.99736 * 10 9 7 13 13 H 1.07996 * 120.00124 * 0.02562 * 12 10 9 14 14 C 1.37872 * 119.99754 * 179.97438 * 12 10 9 15 15 N 1.31519 * 120.00424 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 120.00204 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46786 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47079 * 119.99643 * 16 14 12 19 19 H 1.48493 * 109.47325 * 240.00417 * 16 14 12 20 20 C 1.52998 * 109.47293 * 89.99863 * 10 9 7 21 21 C 1.52995 * 117.49765 * 8.74392 * 20 10 9 22 22 C 1.52998 * 117.49726 * 300.08457 * 20 10 9 23 23 C 1.39868 * 107.92640 * 0.02562 * 5 4 3 24 24 N 1.30844 * 108.19764 * 359.97438 * 23 5 4 25 25 H 1.09001 * 109.47142 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46871 * 299.99950 * 1 2 3 27 27 H 1.08999 * 109.47317 * 59.99347 * 1 2 3 28 28 H 1.09001 * 109.46871 * 240.00049 * 2 1 3 29 29 H 1.08999 * 109.47317 * 120.00653 * 2 1 3 30 30 H 1.07995 * 126.12756 * 0.02562 * 4 3 2 31 31 H 1.09002 * 109.46861 * 29.97707 * 6 5 4 32 32 H 1.09005 * 109.47196 * 149.97635 * 6 5 4 33 33 H 0.97000 * 120.00227 * 180.02562 * 15 14 12 34 34 H 1.09000 * 115.54894 * 154.40840 * 20 10 9 35 35 H 1.09002 * 117.50055 * 359.97438 * 21 20 10 36 36 H 1.09004 * 117.49903 * 145.02131 * 21 20 10 37 37 H 1.08997 * 117.49702 * 214.97732 * 22 20 10 38 38 H 1.08998 * 117.50055 * 359.97438 * 22 20 10 39 39 H 1.07995 * 125.89923 * 180.25722 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8728 1.9211 0.8943 5 6 3.0720 3.2134 0.5459 6 6 3.9556 4.1995 1.2656 7 6 3.1527 4.9174 2.3197 8 8 1.9830 4.6554 2.4708 9 8 3.7371 5.8484 3.0901 10 6 2.9028 6.4996 4.0843 11 1 1.8733 6.5351 3.7279 12 6 3.4021 7.9021 4.3183 13 1 4.2602 8.2677 3.7739 14 6 2.7627 8.7189 5.2265 15 7 1.7174 8.2740 5.8891 16 14 3.3819 10.4572 5.5171 17 1 4.5633 10.7124 4.6543 18 1 2.3079 11.4273 5.1845 19 1 3.7665 10.6139 6.9428 20 6 2.9620 5.7119 5.3947 21 6 3.9862 4.5797 5.4926 22 6 2.4958 4.2550 5.3648 23 6 2.3129 3.4723 -0.6000 24 7 1.6811 2.3745 -0.9282 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.3184 1.4127 1.7364 31 1 4.7828 3.6692 1.7373 32 1 4.3482 4.9239 0.5519 33 1 1.2673 8.8488 6.5278 34 1 2.7594 6.2869 6.2983 35 1 4.6177 4.3955 4.6234 36 1 4.4571 4.4093 6.4608 37 1 1.9868 3.8713 6.2490 38 1 2.1466 3.8577 4.4118 39 1 2.2612 4.4141 -1.1259 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526984710.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:53:14 Heat of formation + Delta-G solvation = 13.082830 kcal Electronic energy + Delta-G solvation = -21636.511340 eV Core-core repulsion = 18354.034402 eV Total energy + Delta-G solvation = -3282.476939 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.18749 -39.53784 -36.47925 -34.73946 -34.52007 -32.78170 -31.87999 -30.17708 -28.09625 -26.73765 -23.89297 -23.29150 -21.49393 -21.18079 -20.68148 -19.74692 -18.84626 -17.06041 -16.82816 -16.50909 -15.80377 -15.48630 -15.10656 -14.54968 -14.24553 -14.04180 -13.91163 -13.23731 -13.20532 -12.75742 -12.41060 -12.29595 -12.24994 -11.76620 -11.56242 -11.39120 -11.28772 -11.05655 -10.96207 -10.54840 -10.44104 -10.26779 -10.01719 -9.57832 -9.45662 -9.33273 -9.07039 -8.49374 -8.41789 -8.30451 -6.16438 -4.23175 1.95163 2.51920 2.82093 3.11213 3.25271 3.32521 3.37397 3.94830 4.35384 4.39473 4.75812 4.84305 4.95351 4.96323 5.03238 5.16116 5.22638 5.33283 5.50758 5.53948 5.76666 5.84106 5.87453 5.92904 5.97174 6.12139 6.17872 6.20141 6.46639 6.68756 6.73353 6.97502 7.03134 7.06312 7.24184 7.60305 7.65517 7.76826 7.91089 8.16653 8.70834 8.95232 9.41560 10.90793 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028851 B = 0.004020 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.256469 B = 6963.532409 C = 7266.261168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.133 3.867 3 N -0.375 5.375 4 C 0.069 3.931 5 C -0.220 4.220 6 C -0.037 4.037 7 C 0.448 3.552 8 O -0.510 6.510 9 O -0.355 6.355 10 C 0.248 3.752 11 H 0.051 0.949 12 C -0.516 4.516 13 H 0.071 0.929 14 C 0.063 3.937 15 N -0.886 5.886 16 Si 0.909 3.091 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.115 4.115 21 C -0.194 4.194 22 C -0.211 4.211 23 C 0.065 3.935 24 N -0.299 5.299 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.171 0.829 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.265 0.735 34 H 0.128 0.872 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.133 -14.511 -8.912 17.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.012 3.988 3 N -0.157 5.157 4 C -0.077 4.077 5 C -0.231 4.231 6 C -0.076 4.076 7 C 0.290 3.710 8 O -0.399 6.399 9 O -0.272 6.272 10 C 0.195 3.805 11 H 0.069 0.931 12 C -0.554 4.554 13 H 0.089 0.911 14 C -0.139 4.139 15 N -0.523 5.523 16 Si 0.736 3.264 17 H -0.194 1.194 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.134 4.134 21 C -0.231 4.231 22 C -0.248 4.248 23 C -0.121 4.121 24 N -0.120 5.120 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.112 0.888 30 H 0.188 0.812 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.075 0.925 34 H 0.146 0.854 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 1.774 -15.215 -9.516 18.033 hybrid contribution 0.611 1.209 1.120 1.757 sum 2.384 -14.007 -8.396 16.504 Atomic orbital electron populations 1.22058 0.93851 1.02606 1.03885 1.21628 0.96132 0.77640 1.03409 1.48556 1.35629 1.10096 1.21455 1.22254 0.95157 0.94811 0.95462 1.19474 1.08448 0.94292 1.00915 1.19522 0.96417 0.96405 0.95239 1.23453 0.87073 0.78836 0.81610 1.90583 1.17770 1.63256 1.68283 1.86489 1.45898 1.48625 1.46160 1.20090 0.91028 0.89333 0.80023 0.93123 1.21009 1.15396 0.95013 1.23983 0.91123 1.24909 0.94751 0.99050 0.95235 1.69995 1.19738 1.36650 1.25967 0.86268 0.78864 0.83209 0.78103 1.19423 1.20806 1.20780 1.23016 0.99141 0.88118 1.03095 1.22793 0.91941 1.07184 1.01189 1.23142 0.96573 1.02859 1.02201 1.23734 0.94905 0.97280 0.96223 1.77258 1.23472 0.97072 1.14174 0.90904 0.91822 0.91127 0.90050 0.88817 0.81186 0.88017 0.87540 0.92524 0.85411 0.89735 0.90545 0.90740 0.88780 0.80184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 10.10 37.16 0.38 -1.08 16 2 C 0.13 1.15 7.23 -4.04 -0.03 1.12 16 3 N -0.37 -4.80 3.68 -61.37 -0.23 -5.02 16 4 C 0.07 0.89 11.36 -17.22 -0.20 0.70 16 5 C -0.22 -3.15 4.59 -105.05 -0.48 -3.63 16 6 C -0.04 -0.52 6.30 -29.03 -0.18 -0.71 16 7 C 0.45 8.97 6.90 36.01 0.25 9.22 16 8 O -0.51 -11.75 13.09 -18.75 -0.25 -12.00 16 9 O -0.36 -8.15 8.39 -39.26 -0.33 -8.48 16 10 C 0.25 6.53 2.41 -27.88 -0.07 6.46 16 11 H 0.05 1.51 7.16 -51.93 -0.37 1.13 16 12 C -0.52 -14.30 8.90 -34.44 -0.31 -14.60 16 13 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 14 C 0.06 1.72 5.20 -17.82 -0.09 1.62 16 15 N -0.89 -25.05 11.59 55.43 0.64 -24.41 16 16 Si 0.91 20.93 29.54 -169.99 -5.02 15.91 16 17 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 C -0.12 -2.84 5.27 -90.62 -0.48 -3.32 16 21 C -0.19 -4.02 9.80 -26.70 -0.26 -4.29 16 22 C -0.21 -4.59 9.85 -26.70 -0.26 -4.85 16 23 C 0.06 0.94 11.96 -17.36 -0.21 0.74 16 24 N -0.30 -4.48 12.42 30.62 0.38 -4.10 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 0.58 8.07 -51.93 -0.42 0.16 16 30 H 0.17 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.13 3.45 6.46 -51.93 -0.34 3.12 16 35 H 0.08 1.68 6.91 -51.93 -0.36 1.32 16 36 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.09 2.11 5.37 -51.93 -0.28 1.84 16 39 H 0.18 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 331.22 15.07 4.99 4.99 Total: -1.00 -32.82 331.22 -7.29 -40.11 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -5.54 Total: 5.61 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -1.94 Total: -12.62 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: 0.80 Total: -33.52 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.57 Total: -20.48 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.82 -7.29 -40.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526984710.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.193 kcal (2) G-P(sol) polarization free energy of solvation -32.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds