Wall clock time and date at job start Mon Mar 30 2020 23:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47183 * 2 1 4 4 C 1.34957 * 126.03329 * 124.97448 * 3 2 1 5 5 C 1.35317 * 107.74055 * 179.97438 * 4 3 2 6 6 C 1.50701 * 126.03591 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47387 * 269.97799 * 6 5 4 8 8 O 1.20822 * 119.99479 * 359.97438 * 7 6 5 9 9 O 1.34230 * 119.99652 * 180.02562 * 7 6 5 10 10 C 1.45205 * 116.99274 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47139 * 329.99118 * 10 9 7 12 12 C 1.50704 * 109.46586 * 209.99736 * 10 9 7 13 13 H 1.07996 * 120.00124 * 0.02562 * 12 10 9 14 14 C 1.37872 * 119.99754 * 179.97438 * 12 10 9 15 15 N 1.31519 * 120.00424 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 120.00204 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46786 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47079 * 119.99643 * 16 14 12 19 19 H 1.48493 * 109.47325 * 240.00417 * 16 14 12 20 20 C 1.52998 * 109.47293 * 89.99863 * 10 9 7 21 21 C 1.52995 * 117.49765 * 8.74392 * 20 10 9 22 22 C 1.52998 * 117.49726 * 300.08457 * 20 10 9 23 23 C 1.39868 * 107.92640 * 0.02562 * 5 4 3 24 24 N 1.30844 * 108.19764 * 359.97438 * 23 5 4 25 25 H 1.09001 * 109.47142 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46871 * 299.99950 * 1 2 3 27 27 H 1.08999 * 109.47317 * 59.99347 * 1 2 3 28 28 H 1.09001 * 109.46871 * 240.00049 * 2 1 3 29 29 H 1.08999 * 109.47317 * 120.00653 * 2 1 3 30 30 H 1.07995 * 126.12756 * 0.02562 * 4 3 2 31 31 H 1.09002 * 109.46861 * 29.97707 * 6 5 4 32 32 H 1.09005 * 109.47196 * 149.97635 * 6 5 4 33 33 H 0.97000 * 120.00227 * 180.02562 * 15 14 12 34 34 H 1.09000 * 115.54894 * 154.40840 * 20 10 9 35 35 H 1.09002 * 117.50055 * 359.97438 * 21 20 10 36 36 H 1.09004 * 117.49903 * 145.02131 * 21 20 10 37 37 H 1.08997 * 117.49702 * 214.97732 * 22 20 10 38 38 H 1.08998 * 117.50055 * 359.97438 * 22 20 10 39 39 H 1.07995 * 125.89923 * 180.25722 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8728 1.9211 0.8943 5 6 3.0720 3.2134 0.5459 6 6 3.9556 4.1995 1.2656 7 6 3.1527 4.9174 2.3197 8 8 1.9830 4.6554 2.4708 9 8 3.7371 5.8484 3.0901 10 6 2.9028 6.4996 4.0843 11 1 1.8733 6.5351 3.7279 12 6 3.4021 7.9021 4.3183 13 1 4.2602 8.2677 3.7739 14 6 2.7627 8.7189 5.2265 15 7 1.7174 8.2740 5.8891 16 14 3.3819 10.4572 5.5171 17 1 4.5633 10.7124 4.6543 18 1 2.3079 11.4273 5.1845 19 1 3.7665 10.6139 6.9428 20 6 2.9620 5.7119 5.3947 21 6 3.9862 4.5797 5.4926 22 6 2.4958 4.2550 5.3648 23 6 2.3129 3.4723 -0.6000 24 7 1.6811 2.3745 -0.9282 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.3184 1.4127 1.7364 31 1 4.7828 3.6692 1.7373 32 1 4.3482 4.9239 0.5519 33 1 1.2673 8.8488 6.5278 34 1 2.7594 6.2869 6.2983 35 1 4.6177 4.3955 4.6234 36 1 4.4571 4.4093 6.4608 37 1 1.9868 3.8713 6.2490 38 1 2.1466 3.8577 4.4118 39 1 2.2612 4.4141 -1.1259 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526984710.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:53:13 Heat of formation + Delta-G solvation = -5.801136 kcal Electronic energy + Delta-G solvation = -21637.330211 eV Core-core repulsion = 18354.034402 eV Total energy + Delta-G solvation = -3283.295809 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.22751 -41.20880 -38.22954 -36.39355 -35.50179 -34.83907 -33.02032 -31.10120 -29.96664 -27.98632 -25.34140 -24.66406 -23.17607 -22.68069 -21.63933 -21.09261 -20.52360 -18.83237 -18.30201 -17.83031 -17.51154 -17.03957 -16.34671 -16.09613 -15.68966 -15.22916 -15.01903 -14.60385 -14.36737 -14.18952 -13.94090 -13.44461 -13.25245 -13.10151 -13.00084 -12.94883 -12.81536 -12.68488 -12.29947 -12.26639 -12.16761 -11.88881 -11.46691 -11.30051 -11.26499 -10.96675 -10.43566 -10.37516 -10.33387 -9.35104 -8.23929 -6.39835 0.95456 1.43277 1.43515 1.53824 1.56981 1.63061 1.71538 2.30840 2.59510 3.04781 3.19992 3.56176 3.97216 4.02853 4.09616 4.11855 4.17732 4.28620 4.33806 4.34565 4.37483 4.47751 4.71723 4.73829 4.80241 4.80891 4.96572 4.98971 5.07739 5.16393 5.21395 5.30668 5.34613 5.57547 5.60869 5.69868 5.99721 6.16768 6.22823 6.67652 6.74317 7.14558 7.33406 8.83491 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028851 B = 0.004020 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.256469 B = 6963.532409 C = 7266.261168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.122 3.878 3 N -0.375 5.375 4 C 0.074 3.926 5 C -0.244 4.244 6 C -0.022 4.022 7 C 0.443 3.557 8 O -0.545 6.545 9 O -0.360 6.360 10 C 0.256 3.744 11 H 0.000 1.000 12 C -0.541 4.541 13 H 0.068 0.932 14 C 0.017 3.983 15 N -0.915 5.915 16 Si 0.978 3.022 17 H -0.261 1.261 18 H -0.279 1.279 19 H -0.273 1.273 20 C -0.150 4.150 21 C -0.161 4.161 22 C -0.200 4.200 23 C 0.048 3.952 24 N -0.329 5.329 25 H 0.103 0.897 26 H 0.041 0.959 27 H 0.049 0.951 28 H 0.099 0.901 29 H 0.125 0.875 30 H 0.202 0.798 31 H 0.135 0.865 32 H 0.128 0.872 33 H 0.268 0.732 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.993 -15.926 -8.790 18.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.003 3.997 3 N -0.157 5.157 4 C -0.074 4.074 5 C -0.256 4.256 6 C -0.060 4.060 7 C 0.288 3.712 8 O -0.436 6.436 9 O -0.277 6.277 10 C 0.202 3.798 11 H 0.018 0.982 12 C -0.579 4.579 13 H 0.086 0.914 14 C -0.183 4.183 15 N -0.553 5.553 16 Si 0.801 3.199 17 H -0.185 1.185 18 H -0.205 1.205 19 H -0.199 1.199 20 C -0.169 4.169 21 C -0.198 4.198 22 C -0.237 4.237 23 C -0.137 4.137 24 N -0.150 5.150 25 H 0.122 0.878 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.117 0.883 29 H 0.143 0.857 30 H 0.219 0.781 31 H 0.153 0.847 32 H 0.146 0.854 33 H 0.077 0.923 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 3.636 -16.659 -9.421 19.480 hybrid contribution -0.050 1.538 1.031 1.852 sum 3.586 -15.121 -8.389 17.660 Atomic orbital electron populations 1.22026 0.94248 1.03947 1.01737 1.22053 0.95838 0.75990 1.05825 1.48948 1.35060 1.10994 1.20697 1.22792 0.94302 0.94623 0.95638 1.19603 1.09582 0.95094 1.01297 1.19621 0.96161 0.96530 0.93693 1.24696 0.87263 0.77708 0.81541 1.90569 1.19647 1.64104 1.69231 1.86478 1.45415 1.49594 1.46201 1.19619 0.88747 0.89975 0.81419 0.98189 1.21315 1.15657 0.96358 1.24540 0.91367 1.25801 0.94697 1.03163 0.94658 1.70128 1.20739 1.38159 1.26300 0.85211 0.78486 0.77843 0.78337 1.18517 1.20465 1.19863 1.22702 1.03863 0.89315 1.01035 1.22884 0.91249 1.02695 1.02977 1.23103 0.97964 1.00201 1.02434 1.24041 0.95042 0.97771 0.96850 1.77196 1.24336 0.97890 1.15621 0.87833 0.93955 0.93176 0.88304 0.85712 0.78094 0.84684 0.85423 0.92340 0.88234 0.88508 0.88076 0.89310 0.89563 0.79321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 10.10 71.98 0.73 -1.91 16 2 C 0.12 1.82 7.23 86.38 0.62 2.44 16 3 N -0.37 -8.99 3.68 -348.07 -1.28 -10.27 16 4 C 0.07 1.73 11.36 83.54 0.95 2.68 16 5 C -0.24 -6.64 4.59 -20.14 -0.09 -6.73 16 6 C -0.02 -0.57 6.30 29.10 0.18 -0.39 16 7 C 0.44 17.62 6.90 71.24 0.49 18.11 16 8 O -0.54 -25.64 13.09 21.98 0.29 -25.35 16 9 O -0.36 -16.59 8.39 -51.42 -0.43 -17.02 16 10 C 0.26 13.91 2.41 29.85 0.07 13.98 16 11 H 0.00 0.03 7.16 -2.39 -0.02 0.01 16 12 C -0.54 -30.69 8.90 25.60 0.23 -30.46 16 13 H 0.07 3.78 7.81 -2.91 -0.02 3.76 16 14 C 0.02 0.91 5.20 84.65 0.44 1.35 16 15 N -0.92 -53.25 11.59 21.45 0.25 -53.00 16 16 Si 0.98 43.17 29.54 68.60 2.03 45.20 16 17 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 18 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 20 C -0.15 -7.53 5.27 -10.80 -0.06 -7.59 16 21 C -0.16 -6.37 9.80 30.62 0.30 -6.07 16 22 C -0.20 -8.57 9.85 30.62 0.30 -8.27 16 23 C 0.05 1.40 11.96 85.23 1.02 2.42 16 24 N -0.33 -9.75 12.42 -57.02 -0.71 -10.46 16 25 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.12 1.09 8.07 -2.39 -0.02 1.07 16 30 H 0.20 3.26 8.06 -2.91 -0.02 3.23 16 31 H 0.14 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.13 2.84 8.14 -2.38 -0.02 2.82 16 33 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 34 H 0.10 5.55 6.46 -2.39 -0.02 5.53 16 35 H 0.10 3.58 6.91 -2.39 -0.02 3.56 16 36 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 37 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 38 H 0.09 3.85 5.37 -2.39 -0.01 3.84 16 39 H 0.19 4.71 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -74.46 331.22 6.37 -68.09 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 1.04 Total: 23.24 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: 5.19 Total: -20.44 kcal Atomic # 7 Polarization: -71.99 SS G_CDS: -1.74 Total: -73.73 kcal Atomic # 8 Polarization: -42.22 SS G_CDS: -0.14 Total: -42.37 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -74.46 6.37 -68.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526984710.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.286 kcal (2) G-P(sol) polarization free energy of solvation -74.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds