Wall clock time and date at job start Mon Mar 30 2020 23:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47095 * 2 1 4 4 C 1.34941 * 126.03728 * 124.97440 * 3 2 1 5 5 C 1.35319 * 107.74555 * 179.97438 * 4 3 2 6 6 C 1.50703 * 126.04182 * 180.02562 * 5 4 3 7 7 C 1.50693 * 109.47152 * 269.97259 * 6 5 4 8 8 O 1.20828 * 119.99954 * 0.02562 * 7 6 5 9 9 O 1.34233 * 120.00086 * 179.97438 * 7 6 5 10 10 C 1.45202 * 117.00085 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.46702 * 30.00357 * 10 9 7 12 12 C 1.50700 * 109.46910 * 150.00182 * 10 9 7 13 13 H 1.07995 * 119.99974 * 114.73536 * 12 10 9 14 14 C 1.37881 * 120.00097 * 294.73353 * 12 10 9 15 15 N 1.31511 * 119.99681 * 184.84231 * 14 12 10 16 16 Si 1.86794 * 119.99993 * 4.83689 * 14 12 10 17 17 H 1.48509 * 109.47166 * 84.85542 * 16 14 12 18 18 H 1.48497 * 109.47495 * 204.85522 * 16 14 12 19 19 H 1.48505 * 109.47496 * 324.85768 * 16 14 12 20 20 C 1.52998 * 109.46938 * 270.00086 * 10 9 7 21 21 C 1.53001 * 117.49743 * 134.05068 * 20 10 9 22 22 C 1.53003 * 117.49869 * 65.39246 * 20 10 9 23 23 C 1.39866 * 107.92169 * 359.97438 * 5 4 3 24 24 N 1.30843 * 108.20061 * 0.02562 * 23 5 4 25 25 H 1.09001 * 109.46945 * 300.00055 * 1 2 3 26 26 H 1.08998 * 109.46818 * 60.00098 * 1 2 3 27 27 H 1.09001 * 109.46742 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47235 * 240.00356 * 2 1 3 29 29 H 1.08995 * 109.47529 * 119.99711 * 2 1 3 30 30 H 1.08003 * 126.13022 * 0.02562 * 4 3 2 31 31 H 1.09002 * 109.46954 * 29.97246 * 6 5 4 32 32 H 1.09001 * 109.47023 * 149.96652 * 6 5 4 33 33 H 0.97005 * 119.99744 * 180.02562 * 15 14 12 34 34 H 1.08994 * 115.55039 * 279.72099 * 20 10 9 35 35 H 1.09011 * 117.49883 * 0.02562 * 21 20 10 36 36 H 1.09000 * 117.50122 * 145.01546 * 21 20 10 37 37 H 1.09001 * 117.49652 * 214.97642 * 22 20 10 38 38 H 1.09004 * 117.50090 * 359.97438 * 22 20 10 39 39 H 1.08003 * 125.90310 * 180.25956 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8727 1.9212 0.8941 5 6 3.0718 3.2136 0.5458 6 6 3.9554 4.1998 1.2654 7 6 3.1525 4.9177 2.3193 8 8 1.9829 4.6551 2.4710 9 8 3.7369 5.8482 3.0904 10 6 2.9029 6.4986 4.0852 11 1 2.1244 5.8097 4.4132 12 6 3.7493 6.8992 5.2660 13 1 3.8886 7.9440 5.5008 14 6 4.3458 5.9317 6.0465 15 7 5.0051 6.2761 7.1311 16 14 4.2174 4.1318 5.5635 17 1 5.2862 3.8042 4.5858 18 1 4.3745 3.2827 6.7715 19 1 2.8896 3.8776 4.9490 20 6 2.2577 7.7441 3.4743 21 6 0.7635 7.9597 3.7228 22 6 1.2557 7.5350 2.3370 23 6 2.3137 3.4720 -0.6008 24 7 1.6816 2.3744 -0.9288 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.3183 1.4129 1.7364 31 1 4.7827 3.6696 1.7372 32 1 4.3481 4.9240 0.5516 33 1 5.4251 5.5955 7.6800 34 1 2.8931 8.6285 3.4289 35 1 0.2402 7.2144 4.3220 36 1 0.4158 8.9860 3.8407 37 1 1.2318 8.2821 1.5437 38 1 1.0565 6.5101 2.0238 39 1 2.2622 4.4138 -1.1270 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526984717.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:53:17 Heat of formation + Delta-G solvation = 15.262129 kcal Electronic energy + Delta-G solvation = -21878.405373 eV Core-core repulsion = 18596.022936 eV Total energy + Delta-G solvation = -3282.382437 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.20059 -39.50904 -36.65535 -35.03458 -34.60460 -32.71102 -31.87297 -30.19755 -28.64258 -26.84108 -23.89803 -23.15370 -21.72245 -21.25320 -20.68960 -19.71096 -19.21699 -17.18701 -16.97396 -16.79502 -15.79057 -15.56169 -15.18738 -14.55655 -14.31277 -14.12072 -13.74719 -13.56193 -13.22473 -12.90340 -12.52991 -12.44405 -12.28595 -11.87792 -11.79663 -11.57279 -11.38406 -11.19658 -10.89418 -10.74720 -10.47657 -10.19591 -9.78692 -9.62391 -9.40977 -9.36609 -9.34767 -8.94020 -8.79773 -8.31108 -6.31448 -4.37803 1.93559 2.50028 2.80203 3.07403 3.23399 3.29837 3.35849 3.85109 4.29542 4.34628 4.62646 4.74204 4.83822 4.94946 5.01967 5.13983 5.23111 5.32517 5.47554 5.50422 5.53021 5.68803 5.70582 5.79820 5.84127 5.95358 6.06262 6.20450 6.21902 6.32499 6.54350 6.66592 6.71707 6.79725 7.02324 7.05843 7.42327 7.74773 7.75778 8.28193 8.72179 8.85387 9.29685 10.78048 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018589 B = 0.005588 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.878920 B = 5009.836249 C = 5822.686038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.133 3.867 3 N -0.375 5.375 4 C 0.067 3.933 5 C -0.218 4.218 6 C -0.045 4.045 7 C 0.444 3.556 8 O -0.518 6.518 9 O -0.356 6.356 10 C 0.207 3.793 11 H 0.050 0.950 12 C -0.506 4.506 13 H 0.088 0.912 14 C 0.087 3.913 15 N -0.876 5.876 16 Si 0.875 3.125 17 H -0.268 1.268 18 H -0.291 1.291 19 H -0.259 1.259 20 C -0.138 4.138 21 C -0.171 4.171 22 C -0.200 4.200 23 C 0.065 3.935 24 N -0.299 5.299 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.170 0.830 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.270 0.730 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.138 -10.074 -13.507 17.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.011 3.989 3 N -0.157 5.157 4 C -0.079 4.079 5 C -0.230 4.230 6 C -0.084 4.084 7 C 0.287 3.713 8 O -0.408 6.408 9 O -0.273 6.273 10 C 0.156 3.844 11 H 0.068 0.932 12 C -0.542 4.542 13 H 0.106 0.894 14 C -0.119 4.119 15 N -0.512 5.512 16 Si 0.702 3.298 17 H -0.193 1.193 18 H -0.217 1.217 19 H -0.184 1.184 20 C -0.157 4.157 21 C -0.208 4.208 22 C -0.237 4.237 23 C -0.121 4.121 24 N -0.120 5.120 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.112 0.888 30 H 0.187 0.813 31 H 0.119 0.881 32 H 0.126 0.874 33 H 0.080 0.920 34 H 0.119 0.881 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.122 0.878 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -5.255 -10.885 -14.085 18.560 hybrid contribution 0.548 -0.478 0.607 0.947 sum -4.707 -11.363 -13.478 18.246 Atomic orbital electron populations 1.22054 0.93850 1.02618 1.03816 1.21636 0.96120 0.77636 1.03461 1.48548 1.35666 1.10103 1.21410 1.22269 0.95197 0.94891 0.95501 1.19497 1.08327 0.94302 1.00841 1.19653 0.96693 0.96599 0.95498 1.23577 0.87112 0.78970 0.81653 1.90525 1.17865 1.64197 1.68204 1.86964 1.46684 1.48029 1.45624 1.20731 0.91392 0.88177 0.84133 0.93240 1.21014 1.32258 0.95865 1.05112 0.89365 1.25065 0.93434 0.99604 0.93846 1.69896 1.32869 1.34719 1.13727 0.86873 0.80111 0.84560 0.78255 1.19337 1.21744 1.18351 1.22615 0.91127 1.00979 1.00955 1.22791 0.97411 1.01389 0.99243 1.23175 1.05965 1.02923 0.91614 1.23698 0.95020 0.97272 0.96159 1.77242 1.23541 0.97063 1.14126 0.91884 0.91122 0.90881 0.89992 0.88828 0.81290 0.88123 0.87422 0.92019 0.88092 0.89169 0.89544 0.90090 0.87763 0.80207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 10.10 37.16 0.38 -1.10 16 2 C 0.13 1.20 7.23 -4.04 -0.03 1.17 16 3 N -0.37 -4.99 3.68 -61.37 -0.23 -5.21 16 4 C 0.07 0.94 11.36 -17.23 -0.20 0.75 16 5 C -0.22 -3.30 4.59 -105.05 -0.48 -3.79 16 6 C -0.05 -0.71 6.30 -29.04 -0.18 -0.89 16 7 C 0.44 9.16 6.32 36.00 0.23 9.39 16 8 O -0.52 -11.76 12.98 -18.75 -0.24 -12.00 16 9 O -0.36 -8.30 8.18 -39.27 -0.32 -8.63 16 10 C 0.21 5.11 1.53 -27.88 -0.04 5.07 16 11 H 0.05 1.31 5.90 -51.93 -0.31 1.01 16 12 C -0.51 -14.18 9.35 -34.44 -0.32 -14.51 16 13 H 0.09 2.61 7.99 -52.49 -0.42 2.19 16 14 C 0.09 2.48 5.47 -17.82 -0.10 2.38 16 15 N -0.88 -25.88 13.96 55.43 0.77 -25.10 16 16 Si 0.87 21.73 25.56 -169.99 -4.34 17.38 16 17 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.26 -6.55 6.42 56.52 0.36 -6.19 16 20 C -0.14 -2.96 5.29 -90.62 -0.48 -3.44 16 21 C -0.17 -3.23 10.18 -26.69 -0.27 -3.51 16 22 C -0.20 -3.76 9.82 -26.69 -0.26 -4.03 16 23 C 0.06 0.95 11.96 -17.36 -0.21 0.74 16 24 N -0.30 -4.50 12.42 30.63 0.38 -4.12 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 0.64 8.07 -51.93 -0.42 0.22 16 30 H 0.17 1.96 8.06 -52.48 -0.42 1.53 16 31 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 32 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.10 2.12 8.14 -51.93 -0.42 1.70 16 35 H 0.09 1.75 8.08 -51.92 -0.42 1.33 16 36 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 37 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 38 H 0.10 2.13 5.58 -51.93 -0.29 1.84 16 39 H 0.18 2.15 8.06 -52.48 -0.42 1.73 16 LS Contribution 330.25 15.07 4.98 4.98 Total: -1.00 -33.31 330.25 -6.65 -39.96 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -5.68 Total: 4.49 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -1.97 Total: -11.76 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.93 Total: -34.43 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.56 Total: -20.63 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.34 Total: 17.38 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.31 -6.65 -39.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526984717.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.224 kcal (2) G-P(sol) polarization free energy of solvation -33.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds