Wall clock time and date at job start Mon Mar 30 2020 23:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47095 * 2 1 4 4 C 1.34941 * 126.03728 * 124.97440 * 3 2 1 5 5 C 1.35319 * 107.74555 * 179.97438 * 4 3 2 6 6 C 1.50703 * 126.04182 * 180.02562 * 5 4 3 7 7 C 1.50693 * 109.47152 * 269.97259 * 6 5 4 8 8 O 1.20828 * 119.99954 * 0.02562 * 7 6 5 9 9 O 1.34233 * 120.00086 * 179.97438 * 7 6 5 10 10 C 1.45202 * 117.00085 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.46702 * 30.00357 * 10 9 7 12 12 C 1.50700 * 109.46910 * 150.00182 * 10 9 7 13 13 H 1.07995 * 119.99974 * 114.73536 * 12 10 9 14 14 C 1.37881 * 120.00097 * 294.73353 * 12 10 9 15 15 N 1.31511 * 119.99681 * 184.84231 * 14 12 10 16 16 Si 1.86794 * 119.99993 * 4.83689 * 14 12 10 17 17 H 1.48509 * 109.47166 * 84.85542 * 16 14 12 18 18 H 1.48497 * 109.47495 * 204.85522 * 16 14 12 19 19 H 1.48505 * 109.47496 * 324.85768 * 16 14 12 20 20 C 1.52998 * 109.46938 * 270.00086 * 10 9 7 21 21 C 1.53001 * 117.49743 * 134.05068 * 20 10 9 22 22 C 1.53003 * 117.49869 * 65.39246 * 20 10 9 23 23 C 1.39866 * 107.92169 * 359.97438 * 5 4 3 24 24 N 1.30843 * 108.20061 * 0.02562 * 23 5 4 25 25 H 1.09001 * 109.46945 * 300.00055 * 1 2 3 26 26 H 1.08998 * 109.46818 * 60.00098 * 1 2 3 27 27 H 1.09001 * 109.46742 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47235 * 240.00356 * 2 1 3 29 29 H 1.08995 * 109.47529 * 119.99711 * 2 1 3 30 30 H 1.08003 * 126.13022 * 0.02562 * 4 3 2 31 31 H 1.09002 * 109.46954 * 29.97246 * 6 5 4 32 32 H 1.09001 * 109.47023 * 149.96652 * 6 5 4 33 33 H 0.97005 * 119.99744 * 180.02562 * 15 14 12 34 34 H 1.08994 * 115.55039 * 279.72099 * 20 10 9 35 35 H 1.09011 * 117.49883 * 0.02562 * 21 20 10 36 36 H 1.09000 * 117.50122 * 145.01546 * 21 20 10 37 37 H 1.09001 * 117.49652 * 214.97642 * 22 20 10 38 38 H 1.09004 * 117.50090 * 359.97438 * 22 20 10 39 39 H 1.08003 * 125.90310 * 180.25956 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8727 1.9212 0.8941 5 6 3.0718 3.2136 0.5458 6 6 3.9554 4.1998 1.2654 7 6 3.1525 4.9177 2.3193 8 8 1.9829 4.6551 2.4710 9 8 3.7369 5.8482 3.0904 10 6 2.9029 6.4986 4.0852 11 1 2.1244 5.8097 4.4132 12 6 3.7493 6.8992 5.2660 13 1 3.8886 7.9440 5.5008 14 6 4.3458 5.9317 6.0465 15 7 5.0051 6.2761 7.1311 16 14 4.2174 4.1318 5.5635 17 1 5.2862 3.8042 4.5858 18 1 4.3745 3.2827 6.7715 19 1 2.8896 3.8776 4.9490 20 6 2.2577 7.7441 3.4743 21 6 0.7635 7.9597 3.7228 22 6 1.2557 7.5350 2.3370 23 6 2.3137 3.4720 -0.6008 24 7 1.6816 2.3744 -0.9288 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.3183 1.4129 1.7364 31 1 4.7827 3.6696 1.7372 32 1 4.3481 4.9240 0.5516 33 1 5.4251 5.5955 7.6800 34 1 2.8931 8.6285 3.4289 35 1 0.2402 7.2144 4.3220 36 1 0.4158 8.9860 3.8407 37 1 1.2318 8.2821 1.5437 38 1 1.0565 6.5101 2.0238 39 1 2.2622 4.4138 -1.1270 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526984717.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:53:16 Heat of formation + Delta-G solvation = -4.713278 kcal Electronic energy + Delta-G solvation = -21879.271572 eV Core-core repulsion = 18596.022936 eV Total energy + Delta-G solvation = -3283.248636 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.26235 -41.18597 -38.29838 -36.70719 -35.53272 -34.83296 -33.05766 -31.14974 -30.52834 -28.05199 -25.16524 -24.68929 -23.23754 -22.67588 -21.67154 -21.16192 -20.74464 -19.21816 -18.53700 -17.91095 -17.54998 -16.91465 -16.39619 -16.19279 -15.59134 -15.38789 -15.16755 -14.90282 -14.50508 -14.22835 -14.06895 -13.76268 -13.39923 -13.17586 -13.12333 -13.00928 -12.80928 -12.69731 -12.33897 -12.30172 -12.03466 -11.80543 -11.51571 -11.30745 -11.24189 -11.02964 -10.89945 -10.71272 -10.36868 -9.39283 -8.48031 -6.59358 0.89957 1.22820 1.28005 1.35331 1.51455 1.58437 1.67340 2.21812 2.28824 3.02524 3.12043 3.52407 3.87333 3.91233 3.99707 4.06551 4.09241 4.13197 4.19737 4.28960 4.31671 4.40447 4.60006 4.69449 4.72095 4.75791 4.79611 4.86873 4.93365 4.99547 5.12434 5.18723 5.27461 5.35013 5.38237 5.67521 5.97418 6.10754 6.18453 6.50899 6.70962 7.09739 7.16856 8.65459 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018589 B = 0.005588 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.878920 B = 5009.836249 C = 5822.686038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.121 3.879 3 N -0.374 5.374 4 C 0.065 3.935 5 C -0.242 4.242 6 C -0.035 4.035 7 C 0.439 3.561 8 O -0.540 6.540 9 O -0.367 6.367 10 C 0.217 3.783 11 H 0.028 0.972 12 C -0.522 4.522 13 H 0.057 0.943 14 C 0.039 3.961 15 N -0.918 5.918 16 Si 0.930 3.070 17 H -0.244 1.244 18 H -0.283 1.283 19 H -0.269 1.269 20 C -0.166 4.166 21 C -0.163 4.163 22 C -0.177 4.177 23 C 0.056 3.944 24 N -0.324 5.324 25 H 0.042 0.958 26 H 0.052 0.948 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.120 0.880 30 H 0.192 0.808 31 H 0.118 0.882 32 H 0.136 0.864 33 H 0.275 0.725 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.089 0.911 39 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.305 -11.731 -15.293 19.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.002 3.998 3 N -0.156 5.156 4 C -0.083 4.083 5 C -0.253 4.253 6 C -0.073 4.073 7 C 0.284 3.716 8 O -0.431 6.431 9 O -0.284 6.284 10 C 0.165 3.835 11 H 0.045 0.955 12 C -0.558 4.558 13 H 0.075 0.925 14 C -0.163 4.163 15 N -0.556 5.556 16 Si 0.754 3.246 17 H -0.168 1.168 18 H -0.209 1.209 19 H -0.194 1.194 20 C -0.185 4.185 21 C -0.200 4.200 22 C -0.214 4.214 23 C -0.129 4.129 24 N -0.145 5.145 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.121 0.879 28 H 0.118 0.882 29 H 0.138 0.862 30 H 0.209 0.791 31 H 0.136 0.864 32 H 0.153 0.847 33 H 0.084 0.916 34 H 0.119 0.881 35 H 0.098 0.902 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.107 0.893 39 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -5.423 -12.557 -15.896 20.971 hybrid contribution 0.519 0.020 1.119 1.233 sum -4.904 -12.537 -14.778 19.990 Atomic orbital electron populations 1.22016 0.93924 1.03993 1.01868 1.22058 0.96086 0.75990 1.05692 1.48929 1.35010 1.11070 1.20619 1.22720 0.94781 0.94945 0.95810 1.19578 1.09460 0.94816 1.01477 1.19720 0.96281 0.96983 0.94347 1.24560 0.87377 0.78004 0.81696 1.90518 1.19158 1.64596 1.68845 1.86851 1.46543 1.49193 1.45851 1.20274 0.90011 0.89102 0.84085 0.95459 1.21157 1.32702 0.94627 1.07315 0.92469 1.25798 0.93155 1.03636 0.93727 1.69995 1.34457 1.36181 1.14951 0.86018 0.80051 0.79879 0.78640 1.16822 1.20870 1.19428 1.22498 0.92472 0.99696 1.03823 1.22918 0.95099 1.02846 0.99149 1.23156 1.03269 1.02990 0.91960 1.24045 0.94665 0.97915 0.96292 1.77195 1.24278 0.97778 1.15271 0.93923 0.92841 0.87875 0.88200 0.86172 0.79062 0.86425 0.84661 0.91610 0.88116 0.90222 0.86584 0.86942 0.89294 0.78584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 10.10 71.98 0.73 -1.83 16 2 C 0.12 1.87 7.23 86.38 0.62 2.49 16 3 N -0.37 -9.13 3.68 -348.06 -1.28 -10.41 16 4 C 0.06 1.64 11.36 83.54 0.95 2.59 16 5 C -0.24 -6.75 4.59 -20.14 -0.09 -6.85 16 6 C -0.03 -0.99 6.30 29.10 0.18 -0.81 16 7 C 0.44 17.43 6.32 71.23 0.45 17.88 16 8 O -0.54 -24.02 12.98 21.96 0.28 -23.74 16 9 O -0.37 -16.84 8.18 -51.45 -0.42 -17.27 16 10 C 0.22 10.84 1.53 29.85 0.05 10.89 16 11 H 0.03 1.48 5.90 -2.39 -0.01 1.47 16 12 C -0.52 -30.08 9.35 25.60 0.24 -29.84 16 13 H 0.06 3.55 7.99 -2.91 -0.02 3.53 16 14 C 0.04 2.28 5.47 84.66 0.46 2.74 16 15 N -0.92 -55.49 13.96 21.45 0.30 -55.19 16 16 Si 0.93 44.77 25.56 68.60 1.75 46.52 16 17 H -0.24 -10.73 7.11 99.48 0.71 -10.03 16 18 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 19 H -0.27 -13.32 6.42 99.48 0.64 -12.68 16 20 C -0.17 -7.08 5.29 -10.79 -0.06 -7.13 16 21 C -0.16 -5.96 10.18 30.62 0.31 -5.65 16 22 C -0.18 -6.34 9.82 30.62 0.30 -6.04 16 23 C 0.06 1.55 11.96 85.23 1.02 2.57 16 24 N -0.32 -9.26 12.42 -57.02 -0.71 -9.97 16 25 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.12 1.21 8.07 -2.39 -0.02 1.19 16 30 H 0.19 3.78 8.06 -2.91 -0.02 3.76 16 31 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 32 H 0.14 3.07 8.14 -2.39 -0.02 3.05 16 33 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 34 H 0.10 4.24 8.14 -2.39 -0.02 4.22 16 35 H 0.08 3.07 8.08 -2.38 -0.02 3.05 16 36 H 0.12 3.52 8.14 -2.39 -0.02 3.51 16 37 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 38 H 0.09 3.52 5.58 -2.38 -0.01 3.50 16 39 H 0.20 4.36 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -73.74 330.25 6.06 -67.68 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.97 Total: 21.37 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: 5.16 Total: -18.99 kcal Atomic # 7 Polarization: -73.88 SS G_CDS: -1.69 Total: -75.57 kcal Atomic # 8 Polarization: -40.87 SS G_CDS: -0.14 Total: -41.00 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.75 Total: 46.52 kcal Total: -73.74 6.06 -67.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526984717.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.966 kcal (2) G-P(sol) polarization free energy of solvation -73.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds