Wall clock time and date at job start Tue Mar 31 2020 01:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46503 * 120.00039 * 2 1 4 4 C 1.53003 * 109.47253 * 270.00686 * 3 2 1 5 5 H 1.09009 * 109.46640 * 304.99541 * 4 3 2 6 6 O 1.42900 * 109.47588 * 64.99412 * 4 3 2 7 7 C 1.52995 * 109.47274 * 185.00090 * 4 3 2 8 8 N 1.46907 * 109.47210 * 180.02562 * 7 4 3 9 9 C 1.34775 * 120.00355 * 180.02562 * 2 1 3 10 10 O 1.21618 * 120.00011 * 184.63552 * 9 2 1 11 11 C 1.47430 * 120.00201 * 4.63393 * 9 2 1 12 12 C 1.39233 * 120.28035 * 309.26313 * 11 9 2 13 13 C 1.38216 * 120.09307 * 180.27775 * 12 11 9 14 14 C 1.38834 * 120.67473 * 359.69712 * 13 12 11 15 15 C 1.37593 * 120.56944 * 359.97438 * 14 13 12 16 16 C 1.40709 * 119.88503 * 0.02562 * 15 14 13 17 17 C 1.40882 * 120.32992 * 179.97438 * 16 15 14 18 18 H 1.08007 * 119.99815 * 214.27801 * 17 16 15 19 19 C 1.40274 * 120.00251 * 34.27614 * 17 16 15 20 20 N 1.30625 * 120.00010 * 193.88552 * 19 17 16 21 21 Si 1.86805 * 119.99685 * 13.88889 * 19 17 16 22 22 H 1.48498 * 109.46875 * 267.86954 * 21 19 17 23 23 H 1.48496 * 109.47277 * 27.86584 * 21 19 17 24 24 H 1.48495 * 109.46877 * 147.87026 * 21 19 17 25 25 H 1.09008 * 109.46718 * 272.98609 * 1 2 3 26 26 H 1.08995 * 109.47868 * 32.98438 * 1 2 3 27 27 H 1.09005 * 109.47098 * 152.99041 * 1 2 3 28 28 H 1.09006 * 109.46934 * 29.99737 * 3 2 1 29 29 H 1.08994 * 109.47668 * 149.99984 * 3 2 1 30 30 H 0.96700 * 113.99728 * 59.99819 * 6 4 3 31 31 H 1.09009 * 109.46839 * 299.99329 * 7 4 3 32 32 H 1.08998 * 109.47859 * 59.99441 * 7 4 3 33 33 H 1.00897 * 111.00123 * 56.03655 * 8 7 4 34 34 H 1.00896 * 110.99831 * 180.02562 * 8 7 4 35 35 H 1.08005 * 119.95219 * 359.97438 * 12 11 9 36 36 H 1.07998 * 119.66411 * 179.71270 * 13 12 11 37 37 H 1.07999 * 119.71302 * 180.02562 * 14 13 12 38 38 H 1.08000 * 120.05832 * 180.02562 * 15 14 13 39 39 H 0.97002 * 119.99656 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4523 1.7105 -1.4425 5 1 2.9641 0.9132 -1.9816 6 8 1.2058 1.9936 -2.0814 7 6 3.3236 2.9682 -1.4444 8 7 3.5678 3.3927 -2.8294 9 6 2.1389 -1.1671 -0.0005 10 8 3.3521 -1.1688 0.0846 11 6 1.4055 -2.4419 -0.1042 12 6 0.3331 -2.7059 0.7437 13 6 -0.3481 -3.9046 0.6469 14 6 0.0207 -4.8547 -0.2958 15 6 1.0718 -4.6198 -1.1520 16 6 1.7819 -3.4075 -1.0742 17 6 2.8600 -3.1573 -1.9459 18 1 3.7105 -2.5866 -1.6030 19 6 2.8291 -3.6495 -3.2591 20 7 3.9193 -3.6598 -3.9786 21 14 1.2287 -4.2899 -3.9789 22 1 1.1292 -5.7524 -3.7410 23 1 0.0837 -3.6037 -3.3285 24 1 1.2011 -4.0231 -5.4394 25 1 -0.3633 0.0535 1.0264 26 1 -0.3635 0.8619 -0.5594 27 1 -0.3633 -0.9156 -0.4667 28 1 1.6083 2.0284 0.5138 29 1 3.1498 1.1385 0.5138 30 1 0.6953 2.6950 -1.6542 31 1 2.8118 3.7655 -0.9053 32 1 4.2744 2.7523 -0.9571 33 1 2.6991 3.5369 -3.3219 34 1 4.1419 4.2219 -2.8575 35 1 0.0363 -1.9749 1.4813 36 1 -1.1759 -4.1040 1.3112 37 1 -0.5227 -5.7860 -0.3581 38 1 1.3514 -5.3645 -1.8824 39 1 3.8979 -4.0005 -4.8865 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578446258.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:54 Heat of formation + Delta-G solvation = -62.799364 kcal Electronic energy + Delta-G solvation = -22325.413107 eV Core-core repulsion = 19039.645669 eV Total energy + Delta-G solvation = -3285.767437 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.54570 -37.93973 -36.84419 -34.65188 -33.70687 -33.59470 -30.73830 -30.51908 -29.10526 -26.25570 -25.55302 -24.38971 -22.02477 -21.51422 -20.94468 -18.72619 -17.41765 -16.69844 -16.56961 -16.09353 -15.65088 -15.59081 -15.06164 -14.50873 -14.17327 -13.99997 -13.78833 -13.51844 -12.88230 -12.74111 -12.54137 -12.29621 -12.24382 -12.00897 -11.85348 -11.58666 -11.39322 -10.95793 -10.86789 -10.77102 -10.40652 -10.24246 -9.99770 -9.80991 -9.20947 -8.74614 -8.69826 -8.01931 -7.75790 -7.64147 -6.94021 -4.52581 2.24677 2.61477 3.09237 3.18659 3.29233 3.48966 3.84039 3.96500 4.38136 4.49018 4.58932 5.00258 5.10001 5.22854 5.32986 5.37472 5.58440 5.64144 5.72294 5.78473 5.91526 6.00542 6.05893 6.21265 6.30509 6.39521 6.56044 6.80545 7.01085 7.09219 7.11964 7.26257 7.40274 7.44978 7.58975 7.72426 7.78287 8.01655 8.09804 8.43103 8.61595 8.80398 9.13336 10.06072 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015574 B = 0.007138 C = 0.005667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.379513 B = 3921.681200 C = 4939.771458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.617 5.617 3 C 0.091 3.909 4 C 0.089 3.911 5 H 0.116 0.884 6 O -0.550 6.550 7 C 0.035 3.965 8 N -0.844 5.844 9 C 0.585 3.415 10 O -0.541 6.541 11 C -0.241 4.241 12 C -0.046 4.046 13 C -0.253 4.253 14 C -0.065 4.065 15 C -0.231 4.231 16 C 0.126 3.874 17 C -0.432 4.432 18 H 0.112 0.888 19 C 0.083 3.917 20 N -0.793 5.793 21 Si 0.910 3.090 22 H -0.268 1.268 23 H -0.244 1.244 24 H -0.288 1.288 25 H 0.042 0.958 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.360 0.640 31 H 0.024 0.976 32 H 0.082 0.918 33 H 0.346 0.654 34 H 0.338 0.662 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.442 10.982 4.205 13.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.351 5.351 3 C -0.033 4.033 4 C 0.029 3.971 5 H 0.134 0.866 6 O -0.353 6.353 7 C -0.096 4.096 8 N -0.375 5.375 9 C 0.378 3.622 10 O -0.418 6.418 11 C -0.246 4.246 12 C -0.064 4.064 13 C -0.272 4.272 14 C -0.084 4.084 15 C -0.250 4.250 16 C 0.121 3.879 17 C -0.459 4.459 18 H 0.129 0.871 19 C -0.138 4.138 20 N -0.416 5.416 21 Si 0.735 3.265 22 H -0.194 1.194 23 H -0.167 1.167 24 H -0.216 1.216 25 H 0.061 0.939 26 H 0.080 0.920 27 H 0.103 0.897 28 H 0.088 0.912 29 H 0.109 0.891 30 H 0.205 0.795 31 H 0.043 0.957 32 H 0.100 0.900 33 H 0.159 0.841 34 H 0.150 0.850 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.123 0.877 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.019 9.762 3.538 12.002 hybrid contribution -1.281 1.019 0.243 1.655 sum -7.300 10.781 3.781 13.558 Atomic orbital electron populations 1.21830 0.79959 1.03864 1.00154 1.47618 1.06663 1.05011 1.75805 1.21904 0.98722 0.86247 0.96447 1.22577 0.83841 0.96719 0.93961 0.86600 1.86742 1.32701 1.59199 1.56690 1.22409 1.00667 0.96455 0.90118 1.58491 1.23205 1.41184 1.14608 1.18437 0.86772 0.83281 0.73722 1.90677 1.14342 1.87310 1.49511 1.19362 1.02107 0.95149 1.07957 1.20759 0.93280 0.96115 0.96287 1.20272 1.05104 0.96775 1.05089 1.20729 0.95512 0.97281 0.94872 1.21103 1.01745 0.98017 1.04111 1.17449 0.90430 0.89038 0.90950 1.19893 1.03300 1.27738 0.94961 0.87054 1.26312 0.97984 0.92047 0.97429 1.69589 1.28878 1.32882 1.10235 0.86349 0.83153 0.79874 0.77075 1.19369 1.16687 1.21569 0.93935 0.91982 0.89712 0.91247 0.89143 0.79495 0.95741 0.89956 0.84071 0.84987 0.88382 0.88519 0.88599 0.87697 0.90221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.26 8.97 59.84 0.54 1.80 16 2 N -0.62 -11.12 2.84 -182.85 -0.52 -11.63 16 3 C 0.09 1.34 5.12 -4.04 -0.02 1.32 16 4 C 0.09 1.34 3.48 -26.73 -0.09 1.24 16 5 H 0.12 2.36 8.14 -51.92 -0.42 1.94 16 6 O -0.55 -7.62 11.45 -35.23 -0.40 -8.02 16 7 C 0.04 0.42 6.49 -3.82 -0.02 0.39 16 8 N -0.84 -10.15 9.62 -10.36 -0.10 -10.25 16 9 C 0.59 13.54 6.70 -12.52 -0.08 13.45 16 10 O -0.54 -14.28 14.84 5.26 0.08 -14.21 16 11 C -0.24 -5.75 4.89 -104.37 -0.51 -6.26 16 12 C -0.05 -0.93 7.64 -39.22 -0.30 -1.23 16 13 C -0.25 -5.02 10.03 -39.37 -0.39 -5.41 16 14 C -0.07 -1.38 10.01 -39.60 -0.40 -1.77 16 15 C -0.23 -5.54 7.14 -38.88 -0.28 -5.82 16 16 C 0.13 3.28 5.05 -106.54 -0.54 2.74 16 17 C -0.43 -12.28 8.84 -37.82 -0.33 -12.62 16 18 H 0.11 3.52 6.39 -52.48 -0.34 3.19 16 19 C 0.08 2.25 5.44 -17.30 -0.09 2.15 16 20 N -0.79 -21.80 13.92 55.56 0.77 -21.03 16 21 Si 0.91 21.01 24.54 -169.99 -4.17 16.84 16 22 H -0.27 -5.90 6.66 56.52 0.38 -5.53 16 23 H -0.24 -5.72 6.90 56.52 0.39 -5.33 16 24 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 25 H 0.04 0.53 7.63 -51.92 -0.40 0.14 16 26 H 0.06 0.77 7.06 -51.93 -0.37 0.41 16 27 H 0.08 1.45 5.73 -51.93 -0.30 1.15 16 28 H 0.07 0.75 8.07 -51.93 -0.42 0.34 16 29 H 0.09 1.44 7.36 -51.93 -0.38 1.06 16 30 H 0.36 3.25 9.04 45.56 0.41 3.67 16 31 H 0.02 0.23 8.14 -51.92 -0.42 -0.20 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.35 3.93 8.38 -39.29 -0.33 3.60 16 34 H 0.34 3.20 9.08 -39.29 -0.36 2.84 16 35 H 0.10 1.71 6.73 -52.48 -0.35 1.36 16 36 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 38 H 0.11 2.50 4.94 -52.49 -0.26 2.24 16 39 H 0.29 7.10 8.29 -40.82 -0.34 6.76 16 LS Contribution 316.94 15.07 4.78 4.78 Total: -1.00 -32.37 316.94 -6.47 -38.83 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -4.37 Total: 14.69 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -2.53 Total: -10.00 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.15 Total: -42.91 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.33 Total: -22.23 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.17 Total: 16.84 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.37 -6.47 -38.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578446258.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.969 kcal (2) G-P(sol) polarization free energy of solvation -32.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds