Wall clock time and date at job start Tue Mar 31 2020 01:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46503 * 120.00039 * 2 1 4 4 C 1.53003 * 109.47253 * 270.00686 * 3 2 1 5 5 H 1.09009 * 109.46640 * 304.99541 * 4 3 2 6 6 O 1.42900 * 109.47588 * 64.99412 * 4 3 2 7 7 C 1.52995 * 109.47274 * 185.00090 * 4 3 2 8 8 N 1.46907 * 109.47210 * 180.02562 * 7 4 3 9 9 C 1.34775 * 120.00355 * 180.02562 * 2 1 3 10 10 O 1.21618 * 120.00011 * 184.63552 * 9 2 1 11 11 C 1.47430 * 120.00201 * 4.63393 * 9 2 1 12 12 C 1.39233 * 120.28035 * 309.26313 * 11 9 2 13 13 C 1.38216 * 120.09307 * 180.27775 * 12 11 9 14 14 C 1.38834 * 120.67473 * 359.69712 * 13 12 11 15 15 C 1.37593 * 120.56944 * 359.97438 * 14 13 12 16 16 C 1.40709 * 119.88503 * 0.02562 * 15 14 13 17 17 C 1.40882 * 120.32992 * 179.97438 * 16 15 14 18 18 H 1.08007 * 119.99815 * 214.27801 * 17 16 15 19 19 C 1.40274 * 120.00251 * 34.27614 * 17 16 15 20 20 N 1.30625 * 120.00010 * 193.88552 * 19 17 16 21 21 Si 1.86805 * 119.99685 * 13.88889 * 19 17 16 22 22 H 1.48498 * 109.46875 * 267.86954 * 21 19 17 23 23 H 1.48496 * 109.47277 * 27.86584 * 21 19 17 24 24 H 1.48495 * 109.46877 * 147.87026 * 21 19 17 25 25 H 1.09008 * 109.46718 * 272.98609 * 1 2 3 26 26 H 1.08995 * 109.47868 * 32.98438 * 1 2 3 27 27 H 1.09005 * 109.47098 * 152.99041 * 1 2 3 28 28 H 1.09006 * 109.46934 * 29.99737 * 3 2 1 29 29 H 1.08994 * 109.47668 * 149.99984 * 3 2 1 30 30 H 0.96700 * 113.99728 * 59.99819 * 6 4 3 31 31 H 1.09009 * 109.46839 * 299.99329 * 7 4 3 32 32 H 1.08998 * 109.47859 * 59.99441 * 7 4 3 33 33 H 1.00897 * 111.00123 * 56.03655 * 8 7 4 34 34 H 1.00896 * 110.99831 * 180.02562 * 8 7 4 35 35 H 1.08005 * 119.95219 * 359.97438 * 12 11 9 36 36 H 1.07998 * 119.66411 * 179.71270 * 13 12 11 37 37 H 1.07999 * 119.71302 * 180.02562 * 14 13 12 38 38 H 1.08000 * 120.05832 * 180.02562 * 15 14 13 39 39 H 0.97002 * 119.99656 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4523 1.7105 -1.4425 5 1 2.9641 0.9132 -1.9816 6 8 1.2058 1.9936 -2.0814 7 6 3.3236 2.9682 -1.4444 8 7 3.5678 3.3927 -2.8294 9 6 2.1389 -1.1671 -0.0005 10 8 3.3521 -1.1688 0.0846 11 6 1.4055 -2.4419 -0.1042 12 6 0.3331 -2.7059 0.7437 13 6 -0.3481 -3.9046 0.6469 14 6 0.0207 -4.8547 -0.2958 15 6 1.0718 -4.6198 -1.1520 16 6 1.7819 -3.4075 -1.0742 17 6 2.8600 -3.1573 -1.9459 18 1 3.7105 -2.5866 -1.6030 19 6 2.8291 -3.6495 -3.2591 20 7 3.9193 -3.6598 -3.9786 21 14 1.2287 -4.2899 -3.9789 22 1 1.1292 -5.7524 -3.7410 23 1 0.0837 -3.6037 -3.3285 24 1 1.2011 -4.0231 -5.4394 25 1 -0.3633 0.0535 1.0264 26 1 -0.3635 0.8619 -0.5594 27 1 -0.3633 -0.9156 -0.4667 28 1 1.6083 2.0284 0.5138 29 1 3.1498 1.1385 0.5138 30 1 0.6953 2.6950 -1.6542 31 1 2.8118 3.7655 -0.9053 32 1 4.2744 2.7523 -0.9571 33 1 2.6991 3.5369 -3.3219 34 1 4.1419 4.2219 -2.8575 35 1 0.0363 -1.9749 1.4813 36 1 -1.1759 -4.1040 1.3112 37 1 -0.5227 -5.7860 -0.3581 38 1 1.3514 -5.3645 -1.8824 39 1 3.8979 -4.0005 -4.8865 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578446258.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:54 Heat of formation + Delta-G solvation = -90.975437 kcal Electronic energy + Delta-G solvation = -22326.634913 eV Core-core repulsion = 19039.645669 eV Total energy + Delta-G solvation = -3286.989244 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.15718 -39.35198 -38.45701 -36.21253 -35.49270 -34.72438 -32.38130 -32.27210 -30.47714 -27.66456 -27.21291 -25.83680 -23.62094 -22.94343 -22.49000 -20.35249 -19.34092 -18.24555 -17.78300 -17.35992 -17.25795 -16.88157 -16.54844 -16.06537 -15.83986 -15.45192 -15.14874 -14.96001 -14.50084 -14.31422 -14.08781 -13.84435 -13.61321 -13.42148 -13.34964 -13.13096 -12.74420 -12.65374 -12.44474 -12.16907 -12.11162 -11.98289 -11.64704 -11.35583 -11.06701 -10.52053 -9.64227 -9.52475 -9.48381 -9.39530 -8.90268 -6.56587 0.47808 0.82499 1.21208 1.35727 1.44792 1.89826 2.08419 2.30316 2.60705 3.35201 3.45093 3.53927 3.89315 3.96194 4.11062 4.21512 4.25888 4.36445 4.43114 4.45562 4.61708 4.72005 4.74066 4.81460 4.84727 5.00109 5.01736 5.10254 5.27819 5.45097 5.70246 5.73152 5.84362 5.96150 6.20087 6.21078 6.37406 6.49632 6.59107 6.73629 6.76678 6.88420 7.43275 8.17787 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015574 B = 0.007138 C = 0.005667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.379513 B = 3921.681200 C = 4939.771458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.610 5.610 3 C 0.089 3.911 4 C 0.101 3.899 5 H 0.044 0.956 6 O -0.562 6.562 7 C 0.044 3.956 8 N -0.865 5.865 9 C 0.572 3.428 10 O -0.594 6.594 11 C -0.255 4.255 12 C -0.043 4.043 13 C -0.225 4.225 14 C -0.064 4.064 15 C -0.249 4.249 16 C 0.104 3.896 17 C -0.479 4.479 18 H 0.053 0.947 19 C 0.040 3.960 20 N -0.849 5.849 21 Si 0.971 3.029 22 H -0.247 1.247 23 H -0.248 1.248 24 H -0.279 1.279 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.062 0.938 28 H 0.127 0.873 29 H 0.071 0.929 30 H 0.386 0.614 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.350 0.650 34 H 0.353 0.647 35 H 0.137 0.863 36 H 0.146 0.854 37 H 0.137 0.863 38 H 0.101 0.899 39 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.198 11.893 6.370 18.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.342 5.342 3 C -0.034 4.034 4 C 0.040 3.960 5 H 0.063 0.937 6 O -0.369 6.369 7 C -0.088 4.088 8 N -0.398 5.398 9 C 0.364 3.636 10 O -0.475 6.475 11 C -0.260 4.260 12 C -0.061 4.061 13 C -0.243 4.243 14 C -0.083 4.083 15 C -0.268 4.268 16 C 0.100 3.900 17 C -0.508 4.508 18 H 0.071 0.929 19 C -0.175 4.175 20 N -0.475 5.475 21 Si 0.793 3.207 22 H -0.172 1.172 23 H -0.171 1.171 24 H -0.205 1.205 25 H 0.097 0.903 26 H 0.109 0.891 27 H 0.080 0.920 28 H 0.144 0.856 29 H 0.089 0.911 30 H 0.235 0.765 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.164 0.836 34 H 0.167 0.833 35 H 0.154 0.846 36 H 0.164 0.836 37 H 0.155 0.845 38 H 0.119 0.881 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.824 10.722 5.725 16.275 hybrid contribution -0.003 0.843 -0.155 0.857 sum -10.827 11.565 5.570 16.793 Atomic orbital electron populations 1.22089 0.77438 1.04084 1.02683 1.47666 1.08294 1.04590 1.73624 1.22151 0.98753 0.85935 0.96558 1.22138 0.84631 0.96274 0.92923 0.93747 1.86688 1.32402 1.60598 1.57211 1.22276 0.99955 0.95976 0.90569 1.58424 1.23960 1.42419 1.15003 1.18636 0.86295 0.84935 0.73742 1.90646 1.16581 1.88222 1.52090 1.19781 1.03052 0.95341 1.07791 1.21173 0.91701 0.97469 0.95786 1.20934 1.04649 0.95101 1.03640 1.21227 0.94287 0.99187 0.93552 1.21210 1.03031 0.97109 1.05420 1.17679 0.90351 0.90512 0.91434 1.19651 1.03713 1.30386 0.97081 0.92853 1.27102 1.01184 0.92098 0.97076 1.69649 1.30807 1.36008 1.11075 0.85434 0.78566 0.80205 0.76543 1.17178 1.17111 1.20508 0.90284 0.89103 0.91960 0.85558 0.91081 0.76496 0.91360 0.91049 0.83603 0.83284 0.84566 0.83622 0.84507 0.88113 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.05 8.97 127.77 1.15 3.19 16 2 N -0.61 -21.49 2.84 -850.65 -2.41 -23.90 16 3 C 0.09 2.54 5.12 86.38 0.44 2.98 16 4 C 0.10 3.08 3.48 30.59 0.11 3.18 16 5 H 0.04 2.01 8.14 -2.38 -0.02 1.99 16 6 O -0.56 -14.74 11.45 -148.98 -1.71 -16.45 16 7 C 0.04 1.01 6.49 86.30 0.56 1.57 16 8 N -0.86 -20.61 9.62 -186.70 -1.80 -22.40 16 9 C 0.57 27.46 6.70 86.66 0.58 28.04 16 10 O -0.59 -34.10 14.84 -4.09 -0.06 -34.16 16 11 C -0.26 -12.22 4.89 -19.70 -0.10 -12.31 16 12 C -0.04 -1.59 7.64 22.50 0.17 -1.42 16 13 C -0.22 -7.62 10.03 22.41 0.22 -7.39 16 14 C -0.06 -2.43 10.01 22.26 0.22 -2.21 16 15 C -0.25 -11.74 7.14 22.72 0.16 -11.58 16 16 C 0.10 5.61 5.05 -21.11 -0.11 5.50 16 17 C -0.48 -29.78 8.84 23.41 0.21 -29.57 16 18 H 0.05 3.82 6.39 -2.91 -0.02 3.80 16 19 C 0.04 2.30 5.44 85.37 0.46 2.77 16 20 N -0.85 -50.88 13.92 21.88 0.30 -50.57 16 21 Si 0.97 44.76 24.54 68.60 1.68 46.44 16 22 H -0.25 -10.41 6.66 99.48 0.66 -9.75 16 23 H -0.25 -11.36 6.90 99.48 0.69 -10.67 16 24 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 25 H 0.08 1.53 7.63 -2.38 -0.02 1.51 16 26 H 0.09 1.85 7.06 -2.39 -0.02 1.83 16 27 H 0.06 1.93 5.73 -2.38 -0.01 1.92 16 28 H 0.13 2.16 8.07 -2.38 -0.02 2.14 16 29 H 0.07 2.32 7.36 -2.39 -0.02 2.31 16 30 H 0.39 5.47 9.04 -74.06 -0.67 4.80 16 31 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.35 7.71 8.38 -89.70 -0.75 6.96 16 34 H 0.35 6.40 9.08 -89.70 -0.81 5.59 16 35 H 0.14 4.00 6.73 -2.91 -0.02 3.98 16 36 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 37 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 38 H 0.10 4.77 4.94 -2.91 -0.01 4.75 16 39 H 0.29 15.69 8.29 -92.71 -0.77 14.92 16 Total: -1.00 -82.07 316.94 -1.09 -83.16 By element: Atomic # 1 Polarization: 36.32 SS G_CDS: -1.19 Total: 35.13 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: 4.09 Total: -17.25 kcal Atomic # 7 Polarization: -92.97 SS G_CDS: -3.91 Total: -96.88 kcal Atomic # 8 Polarization: -48.84 SS G_CDS: -1.77 Total: -50.61 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.68 Total: 46.44 kcal Total: -82.07 -1.09 -83.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578446258.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.813 kcal (2) G-P(sol) polarization free energy of solvation -82.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds