Wall clock time and date at job start Tue Mar 31 2020 01:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 120.00039 * 2 1 4 4 N 1.46903 * 109.47300 * 124.99837 * 3 2 1 5 5 C 1.46903 * 110.99797 * 288.18126 * 4 3 2 6 6 C 1.50700 * 109.46712 * 160.62497 * 5 4 3 7 7 H 1.07998 * 120.00176 * 0.85563 * 6 5 4 8 8 C 1.37878 * 119.99895 * 180.85621 * 6 5 4 9 9 N 1.31515 * 120.00040 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00000 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47241 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47422 * 119.99694 * 10 8 6 13 13 H 1.48497 * 109.47111 * 239.99775 * 10 8 6 14 14 C 1.46903 * 111.00102 * 164.22906 * 4 3 2 15 15 C 1.50696 * 109.46973 * 293.95524 * 14 4 3 16 16 C 1.39796 * 126.07938 * 269.95824 * 15 14 4 17 17 C 1.38002 * 106.96911 * 179.77592 * 16 15 14 18 18 C 1.46490 * 126.26138 * 180.25273 * 17 16 15 19 19 O 1.21619 * 120.00264 * 0.19472 * 18 17 16 20 20 O 1.34894 * 119.99708 * 180.18789 * 18 17 16 21 21 N 1.37697 * 107.47323 * 0.41574 * 17 16 15 22 22 C 1.46497 * 125.63576 * 179.84089 * 21 17 16 23 23 C 1.34959 * 108.72722 * 359.57565 * 21 17 16 24 24 H 1.07997 * 119.99681 * 180.02562 * 1 2 3 25 25 H 1.08002 * 119.99824 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.00269 * 179.97438 * 2 1 3 27 27 H 1.09008 * 109.47394 * 4.99777 * 3 2 1 28 28 H 1.08998 * 109.47437 * 245.00140 * 3 2 1 29 29 H 1.09002 * 109.47171 * 280.62373 * 5 4 3 30 30 H 1.08997 * 109.47417 * 40.62438 * 5 4 3 31 31 H 0.96995 * 120.00183 * 179.97438 * 9 8 6 32 32 H 1.08994 * 109.46926 * 173.95604 * 14 4 3 33 33 H 1.09000 * 109.47288 * 53.95432 * 14 4 3 34 34 H 1.08000 * 126.51313 * 0.03596 * 16 15 14 35 35 H 0.96705 * 116.99690 * 180.02562 * 20 18 17 36 36 H 1.09001 * 109.46613 * 269.71720 * 22 21 17 37 37 H 1.08993 * 109.47349 * 149.71864 * 22 21 17 38 38 H 1.09002 * 109.46980 * 29.71680 * 22 21 17 39 39 H 1.08001 * 125.50902 * 180.28735 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 2.2753 1.4850 2.4053 6 6 3.1604 1.0414 3.5415 7 1 4.1634 0.6947 3.3411 8 6 2.6896 1.0779 4.8369 9 7 1.4683 1.5005 5.0810 10 14 3.7869 0.5287 6.2453 11 1 5.1043 0.1019 5.7090 12 1 3.9791 1.6565 7.1920 13 1 3.1494 -0.6097 6.9545 14 6 3.9987 2.3928 0.9669 15 6 4.8787 2.0704 -0.2132 16 6 6.0667 1.3344 -0.1775 17 6 6.5427 1.2750 -1.4715 18 6 7.7640 0.5987 -1.9153 19 8 8.4628 0.0145 -1.1093 20 8 8.1135 0.6238 -3.2179 21 7 5.6614 1.9708 -2.2685 22 6 5.7872 2.1617 -3.7156 23 6 4.6595 2.4429 -1.4973 24 1 -0.5399 -0.9353 0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8501 -0.9353 0.0004 27 1 1.3586 2.1317 0.0895 28 1 2.6213 1.4026 -0.9314 29 1 2.0024 2.5311 2.5445 30 1 1.3733 0.8735 2.3872 31 1 1.1370 1.5259 5.9922 32 1 4.6091 2.4613 1.8673 33 1 3.4955 3.3444 0.7957 34 1 6.5229 0.8925 0.6960 35 1 8.9276 0.1630 -3.4629 36 1 6.3499 3.0739 -3.9140 37 1 4.7949 2.2432 -4.1589 38 1 6.3106 1.3101 -4.1502 39 1 3.8187 3.0234 -1.8471 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588826519.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:25 Heat of formation + Delta-G solvation = -12.452825 kcal Electronic energy + Delta-G solvation = -21414.291398 eV Core-core repulsion = 18130.707151 eV Total energy + Delta-G solvation = -3283.584248 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.45577 -39.62807 -37.02284 -36.18358 -33.47596 -32.91554 -31.88005 -29.78918 -27.64523 -27.05451 -25.29203 -24.09019 -23.06487 -20.79139 -19.93883 -19.69314 -19.04901 -17.77867 -17.14964 -16.32612 -16.01362 -15.53195 -15.08621 -14.83715 -14.32145 -14.16533 -13.91893 -13.78608 -13.21131 -13.17748 -12.63491 -12.35657 -12.24086 -12.10142 -11.84412 -11.62685 -11.24793 -11.04741 -10.89075 -10.79886 -10.55173 -10.51209 -10.35143 -9.87788 -9.17124 -8.78781 -8.49360 -8.33772 -8.09231 -7.16180 -5.94147 -3.94550 1.27092 2.69215 2.73575 2.86552 3.00623 3.27704 3.37512 3.45084 3.51402 4.51479 4.65516 4.85087 5.01678 5.16229 5.19615 5.36039 5.41588 5.54366 5.57824 5.67847 5.75485 5.98790 6.05833 6.20462 6.25036 6.30156 6.43558 6.54151 6.58127 6.96477 7.08173 7.15201 7.23210 7.28451 7.36459 7.43450 7.83462 7.92373 8.20578 8.29223 8.63169 9.14349 9.69506 11.16449 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016108 B = 0.004853 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.885508 B = 5767.781011 C = 6942.457344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.118 4.118 3 C 0.076 3.924 4 N -0.527 5.527 5 C 0.192 3.808 6 C -0.501 4.501 7 H 0.065 0.935 8 C 0.054 3.946 9 N -0.901 5.901 10 Si 0.894 3.106 11 H -0.271 1.271 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.130 3.870 15 C -0.153 4.153 16 C -0.062 4.062 17 C -0.067 4.067 18 C 0.556 3.444 19 O -0.510 6.510 20 O -0.524 6.524 21 N -0.423 5.423 22 C 0.070 3.930 23 C 0.033 3.967 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.107 0.893 27 H 0.025 0.975 28 H 0.069 0.931 29 H -0.010 1.010 30 H 0.035 0.965 31 H 0.259 0.741 32 H 0.092 0.908 33 H 0.027 0.973 34 H 0.152 0.848 35 H 0.410 0.590 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.921 2.213 -19.447 20.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.137 4.137 3 C -0.052 4.052 4 N -0.251 5.251 5 C 0.067 3.933 6 C -0.539 4.539 7 H 0.083 0.917 8 C -0.146 4.146 9 N -0.541 5.541 10 Si 0.722 3.278 11 H -0.196 1.196 12 H -0.212 1.212 13 H -0.212 1.212 14 C 0.002 3.998 15 C -0.159 4.159 16 C -0.089 4.089 17 C -0.175 4.175 18 C 0.402 3.598 19 O -0.398 6.398 20 O -0.337 6.337 21 N -0.099 5.099 22 C -0.072 4.072 23 C -0.104 4.104 24 H 0.109 0.891 25 H 0.108 0.892 26 H 0.125 0.875 27 H 0.043 0.957 28 H 0.088 0.912 29 H 0.008 0.992 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.045 0.955 34 H 0.170 0.830 35 H 0.269 0.731 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.115 0.885 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 6.969 1.871 -19.341 20.643 hybrid contribution 0.479 0.136 0.635 0.807 sum 7.447 2.007 -18.706 20.234 Atomic orbital electron populations 1.23664 0.96006 1.01047 1.04035 1.22871 0.95279 0.98900 0.96635 1.21226 0.94306 0.93955 0.95668 1.62094 1.14740 1.45511 1.02774 1.19774 0.94063 0.95280 0.84143 1.21233 1.00262 1.42078 0.90359 0.91721 1.24973 0.95125 0.95681 0.98862 1.69972 1.16023 1.47888 1.20190 0.86495 0.80913 0.78168 0.82195 1.19556 1.21225 1.21173 1.20360 0.92930 0.91735 0.94747 1.19641 0.97806 1.04181 0.94281 1.21341 0.95179 0.98292 0.94127 1.19194 0.95183 1.11613 0.91543 1.19540 0.83653 0.77102 0.79522 1.90961 1.52247 1.42176 1.54410 1.84620 1.47404 1.73354 1.28343 1.43735 1.18666 1.39889 1.07582 1.22203 1.03666 1.04048 0.77248 1.21838 0.93873 1.03709 0.90954 0.89083 0.89232 0.87470 0.95697 0.91238 0.99173 0.94722 0.93140 0.88951 0.95504 0.82987 0.73093 0.90832 0.89867 0.88501 0.81552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.41 14.32 29.01 0.42 -3.00 16 2 C -0.12 -2.10 8.75 -36.03 -0.32 -2.41 16 3 C 0.08 1.37 5.28 -4.98 -0.03 1.34 16 4 N -0.53 -11.18 4.36 -238.96 -1.04 -12.22 16 5 C 0.19 4.97 4.59 -4.97 -0.02 4.95 16 6 C -0.50 -14.09 8.56 -34.44 -0.29 -14.39 16 7 H 0.06 1.82 7.74 -52.49 -0.41 1.42 16 8 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 10 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 14 C 0.13 2.45 5.28 -4.98 -0.03 2.42 16 15 C -0.15 -2.45 5.04 -105.02 -0.53 -2.98 16 16 C -0.06 -1.03 10.60 -39.09 -0.41 -1.45 16 17 C -0.07 -0.97 6.89 -81.99 -0.56 -1.54 16 18 C 0.56 7.48 8.29 34.05 0.28 7.77 16 19 O -0.51 -8.45 17.67 -19.36 -0.34 -8.80 16 20 O -0.52 -4.62 10.86 -41.02 -0.45 -5.07 16 21 N -0.42 -5.07 3.15 -120.41 -0.38 -5.45 16 22 C 0.07 0.53 10.57 59.85 0.63 1.16 16 23 C 0.03 0.42 9.60 -17.16 -0.16 0.26 16 24 H 0.09 1.34 8.06 -52.49 -0.42 0.91 16 25 H 0.09 1.41 7.84 -52.49 -0.41 0.99 16 26 H 0.11 1.92 8.06 -52.49 -0.42 1.50 16 27 H 0.02 0.45 7.71 -51.92 -0.40 0.05 16 28 H 0.07 1.09 5.51 -51.93 -0.29 0.80 16 29 H -0.01 -0.26 8.00 -51.93 -0.42 -0.68 16 30 H 0.03 0.97 7.12 -51.93 -0.37 0.60 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.09 1.91 7.37 -51.93 -0.38 1.53 16 33 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 34 H 0.15 2.62 8.06 -52.49 -0.42 2.20 16 35 H 0.41 1.78 9.11 45.56 0.42 2.19 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.10 0.72 6.13 -51.93 -0.32 0.40 16 39 H 0.17 1.69 7.94 -52.49 -0.42 1.27 16 LS Contribution 334.76 15.07 5.04 5.04 Total: -1.00 -33.87 334.76 -7.24 -41.11 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -4.66 Total: 1.02 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -1.13 Total: -6.40 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: -0.69 Total: -43.88 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.79 Total: -13.86 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.87 -7.24 -41.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826519.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.658 kcal (2) G-P(sol) polarization free energy of solvation -33.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds