Wall clock time and date at job start Tue Mar 31 2020 01:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 120.00039 * 2 1 4 4 N 1.46903 * 109.47300 * 124.99837 * 3 2 1 5 5 C 1.46903 * 110.99797 * 288.18126 * 4 3 2 6 6 C 1.50700 * 109.46712 * 160.62497 * 5 4 3 7 7 H 1.07998 * 120.00176 * 0.85563 * 6 5 4 8 8 C 1.37878 * 119.99895 * 180.85621 * 6 5 4 9 9 N 1.31515 * 120.00040 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00000 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47241 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47422 * 119.99694 * 10 8 6 13 13 H 1.48497 * 109.47111 * 239.99775 * 10 8 6 14 14 C 1.46903 * 111.00102 * 164.22906 * 4 3 2 15 15 C 1.50696 * 109.46973 * 293.95524 * 14 4 3 16 16 C 1.39796 * 126.07938 * 269.95824 * 15 14 4 17 17 C 1.38002 * 106.96911 * 179.77592 * 16 15 14 18 18 C 1.46490 * 126.26138 * 180.25273 * 17 16 15 19 19 O 1.21619 * 120.00264 * 0.19472 * 18 17 16 20 20 O 1.34894 * 119.99708 * 180.18789 * 18 17 16 21 21 N 1.37697 * 107.47323 * 0.41574 * 17 16 15 22 22 C 1.46497 * 125.63576 * 179.84089 * 21 17 16 23 23 C 1.34959 * 108.72722 * 359.57565 * 21 17 16 24 24 H 1.07997 * 119.99681 * 180.02562 * 1 2 3 25 25 H 1.08002 * 119.99824 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.00269 * 179.97438 * 2 1 3 27 27 H 1.09008 * 109.47394 * 4.99777 * 3 2 1 28 28 H 1.08998 * 109.47437 * 245.00140 * 3 2 1 29 29 H 1.09002 * 109.47171 * 280.62373 * 5 4 3 30 30 H 1.08997 * 109.47417 * 40.62438 * 5 4 3 31 31 H 0.96995 * 120.00183 * 179.97438 * 9 8 6 32 32 H 1.08994 * 109.46926 * 173.95604 * 14 4 3 33 33 H 1.09000 * 109.47288 * 53.95432 * 14 4 3 34 34 H 1.08000 * 126.51313 * 0.03596 * 16 15 14 35 35 H 0.96705 * 116.99690 * 180.02562 * 20 18 17 36 36 H 1.09001 * 109.46613 * 269.71720 * 22 21 17 37 37 H 1.08993 * 109.47349 * 149.71864 * 22 21 17 38 38 H 1.09002 * 109.46980 * 29.71680 * 22 21 17 39 39 H 1.08001 * 125.50902 * 180.28735 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 2.2753 1.4850 2.4053 6 6 3.1604 1.0414 3.5415 7 1 4.1634 0.6947 3.3411 8 6 2.6896 1.0779 4.8369 9 7 1.4683 1.5005 5.0810 10 14 3.7869 0.5287 6.2453 11 1 5.1043 0.1019 5.7090 12 1 3.9791 1.6565 7.1920 13 1 3.1494 -0.6097 6.9545 14 6 3.9987 2.3928 0.9669 15 6 4.8787 2.0704 -0.2132 16 6 6.0667 1.3344 -0.1775 17 6 6.5427 1.2750 -1.4715 18 6 7.7640 0.5987 -1.9153 19 8 8.4628 0.0145 -1.1093 20 8 8.1135 0.6238 -3.2179 21 7 5.6614 1.9708 -2.2685 22 6 5.7872 2.1617 -3.7156 23 6 4.6595 2.4429 -1.4973 24 1 -0.5399 -0.9353 0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8501 -0.9353 0.0004 27 1 1.3586 2.1317 0.0895 28 1 2.6213 1.4026 -0.9314 29 1 2.0024 2.5311 2.5445 30 1 1.3733 0.8735 2.3872 31 1 1.1370 1.5259 5.9922 32 1 4.6091 2.4613 1.8673 33 1 3.4955 3.3444 0.7957 34 1 6.5229 0.8925 0.6960 35 1 8.9276 0.1630 -3.4629 36 1 6.3499 3.0739 -3.9140 37 1 4.7949 2.2432 -4.1589 38 1 6.3106 1.3101 -4.1502 39 1 3.8187 3.0234 -1.8471 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588826519.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:25 Heat of formation + Delta-G solvation = -35.627961 kcal Electronic energy + Delta-G solvation = -21415.296348 eV Core-core repulsion = 18130.707151 eV Total energy + Delta-G solvation = -3284.589197 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.52201 -40.64915 -38.61235 -37.13124 -34.92818 -34.62550 -33.33193 -31.02545 -29.24832 -28.44404 -26.47152 -25.61247 -24.45553 -22.44752 -20.97443 -20.86534 -20.43358 -18.78099 -18.46453 -18.18652 -17.07279 -16.83937 -16.47903 -16.00226 -15.98511 -15.52756 -15.30985 -14.87119 -14.65201 -14.39859 -14.03851 -13.81261 -13.57476 -13.14599 -13.07898 -12.90967 -12.65413 -12.59380 -12.55449 -12.39457 -12.28415 -11.98980 -11.89526 -11.67688 -11.26364 -10.56795 -10.15440 -9.59824 -9.24863 -8.85824 -8.14385 -6.22851 0.19955 1.41194 1.42118 1.45969 1.56338 1.63107 1.77427 2.10446 2.15596 2.44331 3.17429 3.61642 3.88312 4.00546 4.18305 4.23212 4.29968 4.36420 4.50354 4.53451 4.66589 4.69085 4.81850 4.85283 4.97925 5.04757 5.11547 5.22491 5.34120 5.36935 5.54244 5.71176 5.73916 5.80325 5.92887 5.98332 6.18472 6.27051 6.49224 6.75365 6.94099 6.95318 7.46269 8.95771 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016108 B = 0.004853 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.885508 B = 5767.781011 C = 6942.457344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.144 4.144 3 C 0.080 3.920 4 N -0.538 5.538 5 C 0.211 3.789 6 C -0.515 4.515 7 H 0.056 0.944 8 C 0.005 3.995 9 N -0.933 5.933 10 Si 0.961 3.039 11 H -0.269 1.269 12 H -0.277 1.277 13 H -0.279 1.279 14 C 0.138 3.862 15 C -0.179 4.179 16 C -0.096 4.096 17 C -0.073 4.073 18 C 0.565 3.435 19 O -0.550 6.550 20 O -0.502 6.502 21 N -0.408 5.408 22 C 0.060 3.940 23 C 0.056 3.944 24 H 0.108 0.892 25 H 0.096 0.904 26 H 0.101 0.899 27 H 0.026 0.974 28 H 0.096 0.904 29 H -0.036 1.036 30 H 0.010 0.990 31 H 0.263 0.737 32 H 0.059 0.941 33 H 0.037 0.963 34 H 0.127 0.873 35 H 0.433 0.567 36 H 0.092 0.908 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.207 2.509 -22.007 23.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.162 4.162 3 C -0.047 4.047 4 N -0.262 5.262 5 C 0.085 3.915 6 C -0.554 4.554 7 H 0.074 0.926 8 C -0.193 4.193 9 N -0.574 5.574 10 Si 0.786 3.214 11 H -0.193 1.193 12 H -0.203 1.203 13 H -0.205 1.205 14 C 0.010 3.990 15 C -0.184 4.184 16 C -0.123 4.123 17 C -0.183 4.183 18 C 0.412 3.588 19 O -0.441 6.441 20 O -0.317 6.317 21 N -0.082 5.082 22 C -0.079 4.079 23 C -0.083 4.083 24 H 0.126 0.874 25 H 0.114 0.886 26 H 0.119 0.881 27 H 0.044 0.956 28 H 0.114 0.886 29 H -0.018 1.018 30 H 0.028 0.972 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.145 0.855 35 H 0.296 0.704 36 H 0.111 0.889 37 H 0.130 0.870 38 H 0.120 0.880 39 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 7.284 2.168 -21.975 23.252 hybrid contribution 0.391 0.062 1.276 1.336 sum 7.674 2.229 -20.699 22.188 Atomic orbital electron populations 1.23880 0.95605 1.02193 1.01692 1.22897 0.95947 0.98582 0.98806 1.21276 0.94021 0.94159 0.95253 1.61985 1.15327 1.46794 1.02083 1.19358 0.93123 0.92816 0.86223 1.21506 1.00195 1.42028 0.91654 0.92618 1.25789 0.96453 0.95640 1.01425 1.70077 1.17580 1.48822 1.20959 0.85464 0.79035 0.77982 0.78931 1.19314 1.20283 1.20485 1.20166 0.92329 0.91543 0.94997 1.19326 0.97795 1.06462 0.94866 1.21241 0.96333 0.99938 0.94828 1.19178 0.95989 1.11873 0.91239 1.19361 0.82891 0.76122 0.80416 1.90951 1.53401 1.43906 1.55868 1.84552 1.48719 1.73068 1.25326 1.44014 1.17181 1.37802 1.09182 1.22605 1.05977 1.05150 0.74145 1.22153 0.94304 1.02208 0.89611 0.87392 0.88610 0.88123 0.95614 0.88558 1.01796 0.97175 0.92842 0.92207 0.94522 0.85537 0.70423 0.88932 0.87005 0.88015 0.77975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.15 14.32 67.78 0.97 -5.18 16 2 C -0.14 -5.03 8.75 25.64 0.22 -4.81 16 3 C 0.08 2.83 5.28 85.56 0.45 3.28 16 4 N -0.54 -23.44 4.36 -909.93 -3.97 -27.41 16 5 C 0.21 11.36 4.59 85.56 0.39 11.75 16 6 C -0.52 -30.11 8.56 25.60 0.22 -29.89 16 7 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 8 C 0.00 0.27 5.46 84.65 0.46 0.73 16 9 N -0.93 -57.00 13.29 21.45 0.28 -56.72 16 10 Si 0.96 46.02 29.54 68.60 2.03 48.04 16 11 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 13 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 14 C 0.14 5.33 5.28 85.56 0.45 5.79 16 15 C -0.18 -5.72 5.04 -20.12 -0.10 -5.82 16 16 C -0.10 -3.29 10.60 22.59 0.24 -3.05 16 17 C -0.07 -2.05 6.89 40.32 0.28 -1.77 16 18 C 0.57 14.54 8.29 69.97 0.58 15.12 16 19 O -0.55 -18.34 17.67 19.45 0.34 -18.00 16 20 O -0.50 -7.33 10.86 -58.09 -0.63 -7.97 16 21 N -0.41 -8.54 3.15 -534.85 -1.68 -10.22 16 22 C 0.06 0.64 10.57 127.77 1.35 1.99 16 23 C 0.06 1.29 9.60 83.58 0.80 2.09 16 24 H 0.11 2.98 8.06 -2.91 -0.02 2.96 16 25 H 0.10 2.87 7.84 -2.91 -0.02 2.85 16 26 H 0.10 3.62 8.06 -2.91 -0.02 3.60 16 27 H 0.03 0.90 7.71 -2.38 -0.02 0.89 16 28 H 0.10 2.82 5.51 -2.39 -0.01 2.81 16 29 H -0.04 -2.06 8.00 -2.39 -0.02 -2.08 16 30 H 0.01 0.59 7.12 -2.39 -0.02 0.57 16 31 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 32 H 0.06 2.65 7.37 -2.39 -0.02 2.63 16 33 H 0.04 1.32 8.12 -2.39 -0.02 1.30 16 34 H 0.13 4.81 8.06 -2.91 -0.02 4.79 16 35 H 0.43 2.36 9.11 -74.05 -0.67 1.69 16 36 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.10 1.05 6.13 -2.39 -0.01 1.03 16 39 H 0.20 3.16 7.94 -2.91 -0.02 3.14 16 Total: -1.00 -76.43 334.76 3.07 -73.36 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 0.38 Total: 8.67 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 6.32 Total: -9.76 kcal Atomic # 7 Polarization: -88.98 SS G_CDS: -5.37 Total: -94.35 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.29 Total: -25.96 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.04 kcal Total: -76.43 3.07 -73.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826519.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.732 kcal (2) G-P(sol) polarization free energy of solvation -76.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds