Wall clock time and date at job start Tue Mar 31 2020 01:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35909 * 116.99937 * 2 1 4 4 C 1.38849 * 119.98280 * 0.02562 * 3 2 1 5 5 C 1.38247 * 120.23443 * 180.02562 * 4 3 2 6 6 C 1.38001 * 120.21186 * 359.95639 * 5 4 3 7 7 C 1.39566 * 119.96230 * 0.02562 * 6 5 4 8 8 C 1.47865 * 120.11657 * 180.02562 * 7 6 5 9 9 O 1.21550 * 120.00112 * 140.72984 * 8 7 6 10 10 N 1.34773 * 119.99892 * 320.72519 * 8 7 6 11 11 C 1.46501 * 119.99959 * 4.85692 * 10 8 7 12 12 C 1.46498 * 119.99966 * 184.84905 * 10 8 7 13 13 C 1.53001 * 109.46808 * 90.00643 * 12 10 8 14 14 N 1.46500 * 109.47231 * 180.02562 * 13 12 10 15 15 C 1.36943 * 120.00392 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99544 * 359.97438 * 15 14 13 17 17 C 1.38810 * 120.00169 * 179.97438 * 15 14 13 18 18 N 1.31618 * 119.99778 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00067 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47154 * 89.99910 * 19 17 15 21 21 H 1.48495 * 109.47229 * 210.00006 * 19 17 15 22 22 H 1.48502 * 109.47141 * 330.00115 * 19 17 15 23 23 C 1.38456 * 119.98279 * 179.97438 * 3 2 1 24 24 H 1.08995 * 109.47514 * 299.99799 * 1 2 3 25 25 H 1.09002 * 109.47169 * 60.00521 * 1 2 3 26 26 H 1.09003 * 109.46860 * 180.02562 * 1 2 3 27 27 H 1.07991 * 119.88352 * 359.97438 * 4 3 2 28 28 H 1.08004 * 119.89564 * 179.97438 * 5 4 3 29 29 H 1.07995 * 120.02078 * 180.02562 * 6 5 4 30 30 H 1.08997 * 109.47473 * 85.68161 * 11 10 8 31 31 H 1.09005 * 109.47216 * 205.67701 * 11 10 8 32 32 H 1.08998 * 109.47181 * 325.67872 * 11 10 8 33 33 H 1.09001 * 109.47174 * 210.00245 * 12 10 8 34 34 H 1.08997 * 109.47533 * 330.00941 * 12 10 8 35 35 H 1.09001 * 109.46928 * 299.99752 * 13 12 10 36 36 H 1.08998 * 109.47437 * 60.00322 * 13 12 10 37 37 H 0.97007 * 120.00001 * 359.97438 * 14 13 12 38 38 H 0.97003 * 119.99867 * 179.97438 * 18 17 15 39 39 H 1.07995 * 120.10723 * 359.72636 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2894 2.3752 0.0005 5 6 1.9116 3.6098 0.0000 6 6 3.2891 3.6931 -0.0002 7 6 4.0579 2.5283 -0.0003 8 6 5.5341 2.6137 0.0001 9 8 6.1877 1.8350 0.6663 10 7 6.1548 3.5549 -0.7383 11 6 5.3671 4.5596 -1.4568 12 6 7.6173 3.5732 -0.8224 13 6 8.0710 2.7127 -2.0034 14 7 9.5335 2.7306 -2.0872 15 6 10.1715 2.0268 -3.0736 16 1 9.5964 1.4582 -3.7895 17 6 11.5572 2.0441 -3.1533 18 7 12.1703 1.3673 -4.1010 19 14 12.5517 3.0280 -1.9154 20 1 12.8775 2.1699 -0.7481 21 1 13.8090 3.4969 -2.5513 22 1 11.7591 4.1995 -1.4628 23 6 3.4286 1.2830 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.2111 2.3162 0.0005 28 1 1.3177 4.5119 0.0000 29 1 3.7719 4.6591 -0.0002 30 1 5.1459 5.3929 -0.7899 31 1 5.9347 4.9214 -2.3142 32 1 4.4346 4.1123 -1.8009 33 1 7.9601 4.5978 -0.9666 34 1 8.0393 3.1753 0.1003 35 1 7.7281 1.6881 -1.8592 36 1 7.6490 3.1107 -2.9262 37 1 10.0499 3.2415 -1.4444 38 1 13.1387 1.3797 -4.1570 39 1 4.0183 0.3783 0.0054 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664328052.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:47 Heat of formation + Delta-G solvation = -13.451679 kcal Electronic energy + Delta-G solvation = -20964.252562 eV Core-core repulsion = 17680.625001 eV Total energy + Delta-G solvation = -3283.627561 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.75955 -39.62323 -37.36721 -36.07340 -34.51771 -31.85093 -31.37952 -30.62649 -28.48112 -27.71603 -26.69217 -24.40590 -22.75730 -22.58638 -21.34720 -19.86473 -18.24797 -17.58107 -16.86460 -16.60133 -16.21885 -16.06843 -15.76788 -15.27465 -14.53352 -14.11842 -14.02867 -13.78980 -13.56075 -13.42101 -13.22108 -12.88230 -12.63528 -12.60876 -12.49678 -11.76399 -11.57575 -11.37743 -11.27078 -11.13484 -11.05713 -10.72276 -10.14950 -9.88586 -9.57313 -9.28033 -8.87147 -8.60832 -8.52351 -7.22125 -5.73760 -3.10084 0.67830 1.11297 2.61039 2.85357 3.12304 3.40158 3.44221 3.48420 3.53960 4.30812 4.42860 4.62301 4.65423 4.74142 4.77885 4.81814 5.05651 5.08412 5.12279 5.18419 5.26498 5.42523 5.53610 5.59737 5.62885 5.65721 5.75841 5.89740 5.96125 6.03083 6.09102 6.28036 6.45051 6.64995 6.81367 7.04729 7.36876 8.01250 8.15990 8.44513 9.22986 9.95075 10.14342 11.44597 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030781 B = 0.003292 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.439344 B = 8504.384660 C = 8934.895163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.121 3.879 4 C -0.191 4.191 5 C -0.088 4.088 6 C -0.133 4.133 7 C -0.083 4.083 8 C 0.556 3.444 9 O -0.523 6.523 10 N -0.604 5.604 11 C 0.071 3.929 12 C 0.103 3.897 13 C 0.146 3.854 14 N -0.753 5.753 15 C -0.243 4.243 16 H 0.090 0.910 17 C 0.004 3.996 18 N -0.934 5.934 19 Si 0.886 3.114 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.277 1.277 23 C -0.097 4.097 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.101 0.899 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.138 0.862 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.031 0.969 36 H 0.027 0.973 37 H 0.361 0.639 38 H 0.260 0.740 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.355 6.887 8.925 29.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.076 3.924 4 C -0.210 4.210 5 C -0.106 4.106 6 C -0.152 4.152 7 C -0.086 4.086 8 C 0.343 3.657 9 O -0.399 6.399 10 N -0.337 5.337 11 C -0.072 4.072 12 C -0.019 4.019 13 C 0.018 3.982 14 N -0.400 5.400 15 C -0.373 4.373 16 H 0.108 0.892 17 C -0.192 4.192 18 N -0.582 5.582 19 Si 0.717 3.283 20 H -0.209 1.209 21 H -0.217 1.217 22 H -0.203 1.203 23 C -0.117 4.117 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.119 0.881 27 H 0.148 0.852 28 H 0.149 0.851 29 H 0.156 0.844 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.049 0.951 36 H 0.045 0.955 37 H 0.194 0.806 38 H 0.070 0.930 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -26.868 6.135 9.073 29.014 hybrid contribution 0.487 0.845 0.685 1.192 sum -26.380 6.980 9.758 28.980 Atomic orbital electron populations 1.23079 0.78260 1.04156 1.01297 1.86118 1.21433 1.26549 1.88684 1.18841 0.91947 0.84464 0.97131 1.21393 1.00196 0.92369 1.07034 1.20872 0.94247 0.97139 0.98335 1.21566 0.93918 0.98173 1.01509 1.19687 0.93154 0.93555 1.02253 1.18283 0.86994 0.80661 0.79728 1.90829 1.66600 1.41000 1.41513 1.47632 1.07399 1.30202 1.48470 1.22180 0.96955 0.91141 0.96914 1.21783 0.77682 1.01223 1.01224 1.20899 0.85361 0.97373 0.94597 1.42557 1.00783 1.60253 1.36369 1.19035 0.90197 1.22397 1.05664 0.89231 1.24673 0.96183 1.00006 0.98308 1.69707 1.08428 1.45646 1.34452 0.86515 0.80025 0.80239 0.81554 1.20947 1.21706 1.20326 1.20435 0.91437 0.98055 1.01737 0.92623 0.92555 0.88084 0.85171 0.85134 0.84399 0.92337 0.90341 0.90429 0.90263 0.89474 0.95094 0.95465 0.80635 0.93036 0.84093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.28 10.49 -19.46 -0.20 -3.48 16 3 C 0.12 1.32 6.68 -39.28 -0.26 1.06 16 4 C -0.19 -1.59 9.03 -39.35 -0.36 -1.95 16 5 C -0.09 -0.68 10.02 -39.67 -0.40 -1.08 16 6 C -0.13 -1.24 7.56 -39.17 -0.30 -1.54 16 7 C -0.08 -1.06 5.23 -104.98 -0.55 -1.61 16 8 C 0.56 8.77 7.35 -12.32 -0.09 8.68 16 9 O -0.52 -10.42 16.47 5.32 0.09 -10.33 16 10 N -0.60 -8.51 2.87 -182.69 -0.52 -9.04 16 11 C 0.07 0.68 8.88 59.85 0.53 1.21 16 12 C 0.10 1.71 5.54 -4.04 -0.02 1.68 16 13 C 0.15 3.02 6.58 -4.04 -0.03 2.99 16 14 N -0.75 -18.78 5.41 -59.91 -0.32 -19.10 16 15 C -0.24 -7.17 10.47 -15.06 -0.16 -7.33 16 16 H 0.09 2.83 8.06 -52.49 -0.42 2.40 16 17 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 18 N -0.93 -30.06 13.97 55.49 0.78 -29.28 16 19 Si 0.89 22.60 27.74 -169.99 -4.71 17.89 16 20 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 22 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 23 C -0.10 -1.26 9.57 -39.02 -0.37 -1.63 16 24 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 25 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 26 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.13 0.74 6.28 -52.49 -0.33 0.41 16 28 H 0.13 0.63 8.06 -52.48 -0.42 0.20 16 29 H 0.14 1.02 5.31 -52.49 -0.28 0.74 16 30 H 0.06 0.42 6.90 -51.93 -0.36 0.06 16 31 H 0.08 0.73 8.04 -51.93 -0.42 0.31 16 32 H 0.08 0.67 5.81 -51.93 -0.30 0.37 16 33 H 0.08 1.14 8.07 -51.93 -0.42 0.72 16 34 H 0.09 1.57 7.36 -51.93 -0.38 1.19 16 35 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.36 8.64 5.53 -40.82 -0.23 8.41 16 38 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 39 H 0.14 1.97 8.05 -52.49 -0.42 1.55 16 LS Contribution 325.43 15.07 4.90 4.90 Total: -1.00 -36.43 325.43 -6.32 -42.75 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.21 Total: 4.03 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -1.11 Total: 1.66 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: -0.07 Total: -57.42 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.12 Total: -13.81 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.71 Total: 17.89 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -36.43 -6.32 -42.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664328052.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.298 kcal (2) G-P(sol) polarization free energy of solvation -36.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds