Wall clock time and date at job start Tue Mar 31 2020 01:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35909 * 116.99937 * 2 1 4 4 C 1.38849 * 119.98280 * 0.02562 * 3 2 1 5 5 C 1.38247 * 120.23443 * 180.02562 * 4 3 2 6 6 C 1.38001 * 120.21186 * 359.95639 * 5 4 3 7 7 C 1.39566 * 119.96230 * 0.02562 * 6 5 4 8 8 C 1.47865 * 120.11657 * 180.02562 * 7 6 5 9 9 O 1.21550 * 120.00112 * 140.72984 * 8 7 6 10 10 N 1.34773 * 119.99892 * 320.72519 * 8 7 6 11 11 C 1.46501 * 119.99959 * 4.85692 * 10 8 7 12 12 C 1.46498 * 119.99966 * 184.84905 * 10 8 7 13 13 C 1.53001 * 109.46808 * 90.00643 * 12 10 8 14 14 N 1.46500 * 109.47231 * 180.02562 * 13 12 10 15 15 C 1.36943 * 120.00392 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99544 * 359.97438 * 15 14 13 17 17 C 1.38810 * 120.00169 * 179.97438 * 15 14 13 18 18 N 1.31618 * 119.99778 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00067 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47154 * 89.99910 * 19 17 15 21 21 H 1.48495 * 109.47229 * 210.00006 * 19 17 15 22 22 H 1.48502 * 109.47141 * 330.00115 * 19 17 15 23 23 C 1.38456 * 119.98279 * 179.97438 * 3 2 1 24 24 H 1.08995 * 109.47514 * 299.99799 * 1 2 3 25 25 H 1.09002 * 109.47169 * 60.00521 * 1 2 3 26 26 H 1.09003 * 109.46860 * 180.02562 * 1 2 3 27 27 H 1.07991 * 119.88352 * 359.97438 * 4 3 2 28 28 H 1.08004 * 119.89564 * 179.97438 * 5 4 3 29 29 H 1.07995 * 120.02078 * 180.02562 * 6 5 4 30 30 H 1.08997 * 109.47473 * 85.68161 * 11 10 8 31 31 H 1.09005 * 109.47216 * 205.67701 * 11 10 8 32 32 H 1.08998 * 109.47181 * 325.67872 * 11 10 8 33 33 H 1.09001 * 109.47174 * 210.00245 * 12 10 8 34 34 H 1.08997 * 109.47533 * 330.00941 * 12 10 8 35 35 H 1.09001 * 109.46928 * 299.99752 * 13 12 10 36 36 H 1.08998 * 109.47437 * 60.00322 * 13 12 10 37 37 H 0.97007 * 120.00001 * 359.97438 * 14 13 12 38 38 H 0.97003 * 119.99867 * 179.97438 * 18 17 15 39 39 H 1.07995 * 120.10723 * 359.72636 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2894 2.3752 0.0005 5 6 1.9116 3.6098 0.0000 6 6 3.2891 3.6931 -0.0002 7 6 4.0579 2.5283 -0.0003 8 6 5.5341 2.6137 0.0001 9 8 6.1877 1.8350 0.6663 10 7 6.1548 3.5549 -0.7383 11 6 5.3671 4.5596 -1.4568 12 6 7.6173 3.5732 -0.8224 13 6 8.0710 2.7127 -2.0034 14 7 9.5335 2.7306 -2.0872 15 6 10.1715 2.0268 -3.0736 16 1 9.5964 1.4582 -3.7895 17 6 11.5572 2.0441 -3.1533 18 7 12.1703 1.3673 -4.1010 19 14 12.5517 3.0280 -1.9154 20 1 12.8775 2.1699 -0.7481 21 1 13.8090 3.4969 -2.5513 22 1 11.7591 4.1995 -1.4628 23 6 3.4286 1.2830 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.2111 2.3162 0.0005 28 1 1.3177 4.5119 0.0000 29 1 3.7719 4.6591 -0.0002 30 1 5.1459 5.3929 -0.7899 31 1 5.9347 4.9214 -2.3142 32 1 4.4346 4.1123 -1.8009 33 1 7.9601 4.5978 -0.9666 34 1 8.0393 3.1753 0.1003 35 1 7.7281 1.6881 -1.8592 36 1 7.6490 3.1107 -2.9262 37 1 10.0499 3.2415 -1.4444 38 1 13.1387 1.3797 -4.1570 39 1 4.0183 0.3783 0.0054 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664328052.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:45 Heat of formation + Delta-G solvation = -40.257984 kcal Electronic energy + Delta-G solvation = -20965.414971 eV Core-core repulsion = 17680.625001 eV Total energy + Delta-G solvation = -3284.789970 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.67701 -40.56085 -38.18700 -37.55103 -36.22782 -33.74840 -32.35129 -31.64378 -29.91631 -28.31237 -27.63412 -25.95575 -24.10212 -23.40149 -22.99819 -20.91213 -19.75964 -19.08577 -17.84654 -17.41245 -17.16575 -16.90733 -16.67005 -16.57168 -16.26673 -15.53890 -15.40517 -14.98802 -14.75826 -14.55530 -14.48657 -14.04148 -13.68620 -13.45887 -13.38021 -13.17973 -12.99690 -12.83096 -12.45128 -12.38472 -12.11893 -12.01140 -11.92697 -11.84676 -11.07441 -11.03657 -10.10523 -9.76821 -9.39998 -9.26089 -8.07371 -5.43836 -0.15045 0.37668 1.36160 1.42342 1.48433 1.53356 1.87622 2.38338 2.46028 2.72343 3.23497 3.38386 3.69699 3.79212 4.01831 4.04054 4.11440 4.15643 4.22970 4.34029 4.41868 4.44701 4.49199 4.51163 4.68627 4.74102 4.85334 4.91304 4.94651 5.01411 5.19058 5.29507 5.34778 5.42183 5.65900 5.68664 6.15318 6.25844 6.39534 6.97954 7.01901 7.73311 7.95667 9.14026 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030781 B = 0.003292 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.439344 B = 8504.384660 C = 8934.895163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.343 6.343 3 C 0.112 3.888 4 C -0.179 4.179 5 C -0.075 4.075 6 C -0.125 4.125 7 C -0.102 4.102 8 C 0.548 3.452 9 O -0.582 6.582 10 N -0.601 5.601 11 C 0.062 3.938 12 C 0.115 3.885 13 C 0.149 3.851 14 N -0.754 5.754 15 C -0.244 4.244 16 H 0.050 0.950 17 C -0.063 4.063 18 N -0.983 5.983 19 Si 0.961 3.039 20 H -0.281 1.281 21 H -0.289 1.289 22 H -0.242 1.242 23 C -0.132 4.132 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.113 0.887 27 H 0.164 0.836 28 H 0.175 0.825 29 H 0.164 0.836 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.113 0.887 34 H 0.069 0.931 35 H -0.002 1.002 36 H 0.036 0.964 37 H 0.370 0.630 38 H 0.261 0.739 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.996 10.611 10.077 33.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.257 6.257 3 C 0.066 3.934 4 C -0.198 4.198 5 C -0.092 4.092 6 C -0.143 4.143 7 C -0.105 4.105 8 C 0.338 3.662 9 O -0.463 6.463 10 N -0.332 5.332 11 C -0.079 4.079 12 C -0.008 4.008 13 C 0.021 3.979 14 N -0.400 5.400 15 C -0.375 4.375 16 H 0.069 0.931 17 C -0.254 4.254 18 N -0.633 5.633 19 Si 0.787 3.213 20 H -0.208 1.208 21 H -0.216 1.216 22 H -0.166 1.166 23 C -0.152 4.152 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.132 0.868 27 H 0.182 0.818 28 H 0.193 0.807 29 H 0.181 0.819 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.131 0.869 34 H 0.087 0.913 35 H 0.017 0.983 36 H 0.054 0.946 37 H 0.203 0.797 38 H 0.069 0.931 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -29.584 9.907 10.217 32.829 hybrid contribution 1.131 -0.403 0.245 1.226 sum -28.452 9.504 10.462 31.770 Atomic orbital electron populations 1.23405 0.75853 1.05677 1.02776 1.86085 1.24020 1.26897 1.88735 1.18922 0.91269 0.85763 0.97411 1.21816 1.01746 0.91475 1.04756 1.21384 0.93680 0.98410 0.95740 1.21845 0.94669 0.97616 1.00157 1.19498 0.91298 0.94828 1.04913 1.18915 0.88440 0.79889 0.78946 1.90782 1.68106 1.43218 1.44160 1.47724 1.06627 1.30701 1.48132 1.22549 0.96823 0.90918 0.97602 1.21512 0.79493 1.01693 0.98092 1.20959 0.83165 0.96707 0.97053 1.42482 1.02466 1.59720 1.35362 1.18976 0.90497 1.22206 1.05840 0.93145 1.25604 0.97395 1.01612 1.00802 1.69897 1.08814 1.47655 1.36890 0.85323 0.78156 0.79500 0.78308 1.20777 1.21556 1.16639 1.20345 0.92807 0.97334 1.04701 0.91014 0.90977 0.86828 0.81833 0.80745 0.81906 0.88686 0.89687 0.89338 0.86915 0.91267 0.98346 0.94614 0.79663 0.93056 0.87469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -7.15 10.49 -92.53 -0.97 -8.12 16 3 C 0.11 2.38 6.68 22.47 0.15 2.53 16 4 C -0.18 -2.36 9.03 22.42 0.20 -2.16 16 5 C -0.07 -0.80 10.02 22.22 0.22 -0.57 16 6 C -0.12 -1.92 7.56 22.53 0.17 -1.75 16 7 C -0.10 -2.60 5.23 -20.10 -0.11 -2.71 16 8 C 0.55 17.83 7.35 86.79 0.64 18.47 16 9 O -0.58 -24.90 16.47 -3.87 -0.06 -24.96 16 10 N -0.60 -16.35 2.87 -850.18 -2.44 -18.79 16 11 C 0.06 0.98 8.88 127.77 1.13 2.11 16 12 C 0.12 3.72 5.54 86.38 0.48 4.20 16 13 C 0.15 6.26 6.58 86.38 0.57 6.83 16 14 N -0.75 -37.64 5.41 -343.45 -1.86 -39.50 16 15 C -0.24 -14.82 10.47 84.03 0.88 -13.94 16 16 H 0.05 3.37 8.06 -2.91 -0.02 3.35 16 17 C -0.06 -3.83 5.50 84.86 0.47 -3.36 16 18 N -0.98 -64.97 13.97 21.65 0.30 -64.67 16 19 Si 0.96 46.49 27.74 68.60 1.90 48.39 16 20 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 21 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 22 H -0.24 -10.26 6.52 99.48 0.65 -9.61 16 23 C -0.13 -3.66 9.57 22.63 0.22 -3.44 16 24 H 0.07 0.45 7.66 -2.39 -0.02 0.43 16 25 H 0.07 0.45 7.66 -2.39 -0.02 0.43 16 26 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.16 1.03 6.28 -2.92 -0.02 1.01 16 28 H 0.18 0.43 8.06 -2.91 -0.02 0.41 16 29 H 0.16 1.62 5.31 -2.91 -0.02 1.60 16 30 H 0.09 0.87 6.90 -2.39 -0.02 0.85 16 31 H 0.08 1.28 8.04 -2.38 -0.02 1.26 16 32 H 0.09 1.24 5.81 -2.39 -0.01 1.23 16 33 H 0.11 2.90 8.07 -2.39 -0.02 2.88 16 34 H 0.07 2.51 7.36 -2.39 -0.02 2.49 16 35 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 36 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.37 17.10 5.53 -92.70 -0.51 16.59 16 38 H 0.26 16.25 8.31 -92.71 -0.77 15.48 16 39 H 0.11 3.52 8.05 -2.91 -0.02 3.50 16 Total: -1.00 -85.71 325.43 3.50 -82.21 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.49 Total: 17.96 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 6.14 Total: 7.48 kcal Atomic # 7 Polarization: -118.96 SS G_CDS: -4.00 Total: -122.96 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -1.03 Total: -33.08 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.90 Total: 48.39 kcal Total: -85.71 3.50 -82.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664328052.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.949 kcal (2) G-P(sol) polarization free energy of solvation -85.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds