Wall clock time and date at job start Tue Mar 31 2020 01:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 120.00073 * 2 1 4 4 C 1.52998 * 109.47177 * 269.99757 * 3 2 1 5 5 C 1.52997 * 109.47058 * 180.02562 * 4 3 2 6 6 O 1.42902 * 109.47221 * 180.02562 * 5 4 3 7 7 C 1.34780 * 120.00053 * 180.02562 * 2 1 3 8 8 O 1.21589 * 120.00215 * 180.02562 * 7 2 1 9 9 N 1.34776 * 119.99764 * 359.97438 * 7 2 1 10 10 C 1.39956 * 120.00073 * 184.30128 * 9 7 2 11 11 C 1.39289 * 119.95018 * 144.80286 * 10 9 7 12 12 C 1.38492 * 120.43132 * 179.97438 * 11 10 9 13 13 C 1.37674 * 120.32130 * 0.29604 * 12 11 10 14 14 C 1.40748 * 119.88496 * 359.47607 * 13 12 11 15 15 C 1.41406 * 120.21662 * 180.27066 * 14 13 12 16 16 H 1.07993 * 120.00169 * 214.97285 * 15 14 13 17 17 C 1.39932 * 119.99625 * 34.96317 * 15 14 13 18 18 N 1.30832 * 120.00069 * 355.51582 * 17 15 14 19 19 Si 1.86803 * 120.00031 * 175.51672 * 17 15 14 20 20 H 1.48497 * 109.46914 * 59.99897 * 19 17 15 21 21 H 1.48497 * 109.47132 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.46815 * 300.00185 * 19 17 15 23 23 C 1.38238 * 119.94638 * 324.82677 * 10 9 7 24 24 H 1.09001 * 109.46968 * 269.99623 * 1 2 3 25 25 H 1.08997 * 109.46991 * 30.00213 * 1 2 3 26 26 H 1.09001 * 109.47238 * 150.00103 * 1 2 3 27 27 H 1.08994 * 109.46725 * 30.00128 * 3 2 1 28 28 H 1.09001 * 109.46636 * 150.00187 * 3 2 1 29 29 H 1.09000 * 109.47260 * 300.00083 * 4 3 2 30 30 H 1.08999 * 109.46795 * 60.00132 * 4 3 2 31 31 H 1.09000 * 109.47016 * 300.00065 * 5 4 3 32 32 H 1.08999 * 109.47347 * 60.00302 * 5 4 3 33 33 H 0.96700 * 114.00096 * 180.02562 * 6 5 4 34 34 H 0.97003 * 120.00076 * 4.30777 * 9 7 2 35 35 H 1.08004 * 119.78152 * 359.97438 * 11 10 9 36 36 H 1.07998 * 119.83613 * 180.02562 * 12 11 10 37 37 H 1.07994 * 120.06371 * 179.72755 * 13 12 11 38 38 H 0.97002 * 119.99727 * 179.97438 * 18 17 15 39 39 H 1.08004 * 120.15973 * 359.97110 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2181 3.0350 -1.4424 6 8 3.4558 3.4479 -2.7897 7 6 2.1389 -1.1672 -0.0005 8 8 3.3548 -1.1673 -0.0001 9 7 1.4649 -2.3344 -0.0005 10 6 2.1618 -3.5448 0.0898 11 6 1.6101 -4.6140 0.7917 12 6 2.2907 -5.8164 0.8870 13 6 3.5240 -5.9659 0.2935 14 6 4.0918 -4.8959 -0.4231 15 6 5.3554 -5.0436 -1.0402 16 1 6.0358 -4.2061 -1.0850 17 6 5.7244 -6.2752 -1.5928 18 7 4.9384 -7.3128 -1.4617 19 14 7.3393 -6.4377 -2.5175 20 1 8.4653 -6.0997 -1.6103 21 1 7.4944 -7.8331 -3.0013 22 1 7.3416 -5.5093 -3.6765 23 6 3.3967 -3.6771 -0.5172 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3634 -0.8900 -0.5138 27 1 1.6084 2.0283 0.5138 28 1 3.1499 1.1383 0.5138 29 1 3.0416 0.9507 -1.9563 30 1 1.5001 1.8407 -1.9563 31 1 2.6294 3.7949 -0.9285 32 1 4.1705 2.9043 -0.9288 33 1 3.9385 4.2823 -2.8660 34 1 0.4970 -2.3355 -0.0632 35 1 0.6453 -4.5047 1.2646 36 1 1.8539 -6.6393 1.4332 37 1 4.0530 -6.9040 0.3742 38 1 5.1940 -8.1664 -1.8450 39 1 3.8252 -2.8486 -1.0617 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677654081.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:14 Heat of formation + Delta-G solvation = -52.349110 kcal Electronic energy + Delta-G solvation = -21223.974148 eV Core-core repulsion = 17938.659867 eV Total energy + Delta-G solvation = -3285.314280 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.15803 -37.69049 -37.08141 -35.52459 -34.44313 -33.07267 -31.86973 -29.71774 -28.05213 -27.12601 -25.27925 -24.99111 -22.04465 -21.09014 -20.71289 -19.30619 -18.16124 -17.47100 -17.30386 -16.00791 -15.64739 -15.42396 -15.26207 -14.60973 -14.38735 -13.99714 -13.59863 -13.40658 -13.04644 -12.90434 -12.76228 -12.47813 -12.28091 -12.03915 -11.58188 -11.27770 -11.11416 -11.09225 -11.01851 -10.86035 -10.38048 -10.15785 -10.13033 -9.64906 -9.35263 -9.14334 -8.82675 -8.61180 -7.29382 -6.81682 -6.48882 -4.29382 2.72600 2.87574 3.02937 3.15625 3.19532 3.28194 3.67583 4.06616 4.09343 4.27901 4.79342 4.80372 4.94482 5.05205 5.14570 5.16281 5.30217 5.49278 5.50386 5.57701 5.73113 5.97334 6.15633 6.28294 6.42806 6.50071 6.84906 6.85149 7.11558 7.20366 7.30315 7.41893 7.43776 7.75319 7.85256 8.05820 8.22127 8.33879 8.44348 8.77828 8.97173 9.07010 9.09666 10.40209 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016420 B = 0.004486 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.827856 B = 6239.802625 C = 7745.953034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.638 5.638 3 C 0.140 3.860 4 C -0.139 4.139 5 C 0.080 3.920 6 O -0.574 6.574 7 C 0.699 3.301 8 O -0.562 6.562 9 N -0.680 5.680 10 C 0.156 3.844 11 C -0.251 4.251 12 C -0.100 4.100 13 C -0.161 4.161 14 C 0.114 3.886 15 C -0.461 4.461 16 H 0.075 0.925 17 C 0.071 3.929 18 N -0.815 5.815 19 Si 0.914 3.086 20 H -0.266 1.266 21 H -0.280 1.280 22 H -0.267 1.267 23 C -0.198 4.198 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.044 0.956 32 H 0.049 0.951 33 H 0.378 0.622 34 H 0.394 0.606 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.129 0.871 38 H 0.276 0.724 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.116 15.369 1.720 17.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.377 5.377 3 C 0.016 3.984 4 C -0.178 4.178 5 C 0.002 3.998 6 O -0.380 6.380 7 C 0.401 3.599 8 O -0.437 6.437 9 N -0.328 5.328 10 C 0.064 3.936 11 C -0.272 4.272 12 C -0.119 4.119 13 C -0.181 4.181 14 C 0.111 3.889 15 C -0.492 4.492 16 H 0.093 0.907 17 C -0.143 4.143 18 N -0.443 5.443 19 Si 0.739 3.261 20 H -0.191 1.191 21 H -0.205 1.205 22 H -0.192 1.192 23 C -0.219 4.219 24 H 0.073 0.927 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.105 0.895 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.225 0.775 34 H 0.229 0.771 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.146 0.854 38 H 0.087 0.913 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.556 14.582 1.550 16.496 hybrid contribution 0.224 0.406 -0.400 0.613 sum -7.332 14.988 1.149 16.725 Atomic orbital electron populations 1.21695 0.80215 1.02847 1.01563 1.47017 1.06098 1.04956 1.79609 1.21089 0.97983 0.83682 0.95661 1.21932 1.01035 0.96645 0.98199 1.22067 0.98818 0.95730 0.83220 1.86503 1.79841 1.44483 1.27133 1.15930 0.85523 0.80220 0.78212 1.90962 1.11184 1.85507 1.56093 1.42705 1.09368 1.04064 1.76616 1.17284 0.94092 0.83147 0.99120 1.20097 1.01980 0.95095 1.10058 1.20519 0.95936 0.95225 1.00195 1.21621 0.95837 1.01177 0.99438 1.17564 0.92657 0.90066 0.88632 1.19489 1.00623 0.96420 1.32682 0.90662 1.25840 0.97904 0.95051 0.95541 1.69760 1.35889 1.01157 1.37464 0.86272 0.81842 0.77708 0.80231 1.19071 1.20498 1.19165 1.21313 0.95183 0.99743 1.05661 0.92696 0.90994 0.91546 0.90729 0.89452 0.90333 0.91436 0.93797 0.93227 0.77542 0.77104 0.89373 0.88991 0.85371 0.91264 0.86828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.74 10.24 59.84 0.61 1.35 16 2 N -0.64 -8.71 2.87 -187.36 -0.54 -9.25 16 3 C 0.14 1.63 5.41 -4.04 -0.02 1.61 16 4 C -0.14 -1.66 5.91 -26.73 -0.16 -1.82 16 5 C 0.08 0.78 7.05 37.16 0.26 1.04 16 6 O -0.57 -6.20 13.66 -35.23 -0.48 -6.68 16 7 C 0.70 13.28 8.12 -86.92 -0.71 12.57 16 8 O -0.56 -13.19 13.36 5.29 0.07 -13.12 16 9 N -0.68 -12.76 5.21 -14.27 -0.07 -12.83 16 10 C 0.16 3.64 6.29 -83.76 -0.53 3.11 16 11 C -0.25 -5.62 9.97 -39.10 -0.39 -6.01 16 12 C -0.10 -2.37 10.02 -39.69 -0.40 -2.77 16 13 C -0.16 -4.32 8.67 -38.84 -0.34 -4.66 16 14 C 0.11 3.21 5.55 -106.85 -0.59 2.62 16 15 C -0.46 -13.08 9.04 -37.74 -0.34 -13.43 16 16 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 17 C 0.07 1.88 5.42 -17.34 -0.09 1.79 16 18 N -0.82 -21.92 10.61 55.55 0.59 -21.33 16 19 Si 0.91 19.98 29.56 -169.99 -5.03 14.95 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 22 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 23 C -0.20 -5.30 8.43 -38.68 -0.33 -5.63 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.51 8.07 -51.93 -0.42 0.09 16 26 H 0.07 0.59 6.30 -51.93 -0.33 0.26 16 27 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 28 H 0.09 1.18 7.42 -51.93 -0.39 0.79 16 29 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.38 2.16 9.12 45.56 0.42 2.58 16 34 H 0.39 5.82 6.52 -40.82 -0.27 5.55 16 35 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 36 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 37 H 0.13 3.55 6.15 -52.49 -0.32 3.23 16 38 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 39 H 0.11 3.18 6.23 -52.48 -0.33 2.86 16 LS Contribution 327.56 15.07 4.94 4.94 Total: -1.00 -34.08 327.56 -8.10 -42.18 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -4.56 Total: 11.37 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -3.02 Total: -10.22 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: -0.02 Total: -43.42 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.41 Total: -19.80 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.03 Total: 14.95 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.08 -8.10 -42.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677654081.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.172 kcal (2) G-P(sol) polarization free energy of solvation -34.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds