Wall clock time and date at job start Tue Mar 31 2020 01:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 120.00073 * 2 1 4 4 C 1.52998 * 109.47177 * 269.99757 * 3 2 1 5 5 C 1.52997 * 109.47058 * 180.02562 * 4 3 2 6 6 O 1.42902 * 109.47221 * 180.02562 * 5 4 3 7 7 C 1.34780 * 120.00053 * 180.02562 * 2 1 3 8 8 O 1.21589 * 120.00215 * 180.02562 * 7 2 1 9 9 N 1.34776 * 119.99764 * 359.97438 * 7 2 1 10 10 C 1.39956 * 120.00073 * 184.30128 * 9 7 2 11 11 C 1.39289 * 119.95018 * 144.80286 * 10 9 7 12 12 C 1.38492 * 120.43132 * 179.97438 * 11 10 9 13 13 C 1.37674 * 120.32130 * 0.29604 * 12 11 10 14 14 C 1.40748 * 119.88496 * 359.47607 * 13 12 11 15 15 C 1.41406 * 120.21662 * 180.27066 * 14 13 12 16 16 H 1.07993 * 120.00169 * 214.97285 * 15 14 13 17 17 C 1.39932 * 119.99625 * 34.96317 * 15 14 13 18 18 N 1.30832 * 120.00069 * 355.51582 * 17 15 14 19 19 Si 1.86803 * 120.00031 * 175.51672 * 17 15 14 20 20 H 1.48497 * 109.46914 * 59.99897 * 19 17 15 21 21 H 1.48497 * 109.47132 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.46815 * 300.00185 * 19 17 15 23 23 C 1.38238 * 119.94638 * 324.82677 * 10 9 7 24 24 H 1.09001 * 109.46968 * 269.99623 * 1 2 3 25 25 H 1.08997 * 109.46991 * 30.00213 * 1 2 3 26 26 H 1.09001 * 109.47238 * 150.00103 * 1 2 3 27 27 H 1.08994 * 109.46725 * 30.00128 * 3 2 1 28 28 H 1.09001 * 109.46636 * 150.00187 * 3 2 1 29 29 H 1.09000 * 109.47260 * 300.00083 * 4 3 2 30 30 H 1.08999 * 109.46795 * 60.00132 * 4 3 2 31 31 H 1.09000 * 109.47016 * 300.00065 * 5 4 3 32 32 H 1.08999 * 109.47347 * 60.00302 * 5 4 3 33 33 H 0.96700 * 114.00096 * 180.02562 * 6 5 4 34 34 H 0.97003 * 120.00076 * 4.30777 * 9 7 2 35 35 H 1.08004 * 119.78152 * 359.97438 * 11 10 9 36 36 H 1.07998 * 119.83613 * 180.02562 * 12 11 10 37 37 H 1.07994 * 120.06371 * 179.72755 * 13 12 11 38 38 H 0.97002 * 119.99727 * 179.97438 * 18 17 15 39 39 H 1.08004 * 120.15973 * 359.97110 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2181 3.0350 -1.4424 6 8 3.4558 3.4479 -2.7897 7 6 2.1389 -1.1672 -0.0005 8 8 3.3548 -1.1673 -0.0001 9 7 1.4649 -2.3344 -0.0005 10 6 2.1618 -3.5448 0.0898 11 6 1.6101 -4.6140 0.7917 12 6 2.2907 -5.8164 0.8870 13 6 3.5240 -5.9659 0.2935 14 6 4.0918 -4.8959 -0.4231 15 6 5.3554 -5.0436 -1.0402 16 1 6.0358 -4.2061 -1.0850 17 6 5.7244 -6.2752 -1.5928 18 7 4.9384 -7.3128 -1.4617 19 14 7.3393 -6.4377 -2.5175 20 1 8.4653 -6.0997 -1.6103 21 1 7.4944 -7.8331 -3.0013 22 1 7.3416 -5.5093 -3.6765 23 6 3.3967 -3.6771 -0.5172 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3634 -0.8900 -0.5138 27 1 1.6084 2.0283 0.5138 28 1 3.1499 1.1383 0.5138 29 1 3.0416 0.9507 -1.9563 30 1 1.5001 1.8407 -1.9563 31 1 2.6294 3.7949 -0.9285 32 1 4.1705 2.9043 -0.9288 33 1 3.9385 4.2823 -2.8660 34 1 0.4970 -2.3355 -0.0632 35 1 0.6453 -4.5047 1.2646 36 1 1.8539 -6.6393 1.4332 37 1 4.0530 -6.9040 0.3742 38 1 5.1940 -8.1664 -1.8450 39 1 3.8252 -2.8486 -1.0617 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677654081.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:12 Heat of formation + Delta-G solvation = -77.344267 kcal Electronic energy + Delta-G solvation = -21225.058019 eV Core-core repulsion = 17938.659867 eV Total energy + Delta-G solvation = -3286.398152 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.62136 -39.32504 -38.11176 -36.77582 -36.20285 -34.87154 -32.96443 -31.70988 -29.82065 -27.98058 -27.24649 -26.18491 -23.34122 -22.78308 -22.32857 -20.81282 -19.73299 -18.90668 -18.31396 -17.53177 -17.10411 -16.81769 -16.52001 -16.40966 -15.93233 -15.30704 -15.03440 -14.72083 -14.38158 -14.29412 -13.97541 -13.88305 -13.56783 -13.29434 -13.15546 -12.93207 -12.86647 -12.79674 -12.15503 -12.14676 -12.03443 -11.95894 -11.55197 -11.21606 -10.99013 -10.89667 -10.67726 -9.75571 -9.29566 -8.69911 -8.45505 -6.40632 0.94059 1.02592 1.35468 1.46565 1.50175 1.62170 2.14529 2.23471 2.80024 2.96010 3.39865 3.69681 3.89662 4.14394 4.27623 4.35377 4.39207 4.48916 4.56496 4.62516 4.62884 4.72762 4.86192 4.99220 5.07576 5.13223 5.16011 5.18277 5.19631 5.37110 5.56015 5.73232 5.84989 6.01730 6.10502 6.18427 6.39904 6.72561 6.89918 6.95112 6.98255 7.03428 7.56640 8.42859 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016420 B = 0.004486 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.827856 B = 6239.802625 C = 7745.953034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.628 5.628 3 C 0.138 3.862 4 C -0.134 4.134 5 C 0.081 3.919 6 O -0.600 6.600 7 C 0.690 3.310 8 O -0.618 6.618 9 N -0.670 5.670 10 C 0.164 3.836 11 C -0.236 4.236 12 C -0.096 4.096 13 C -0.186 4.186 14 C 0.082 3.918 15 C -0.507 4.507 16 H 0.058 0.942 17 C 0.032 3.968 18 N -0.839 5.839 19 Si 0.985 3.015 20 H -0.261 1.261 21 H -0.260 1.260 22 H -0.268 1.268 23 C -0.226 4.226 24 H 0.077 0.923 25 H 0.102 0.898 26 H 0.070 0.930 27 H 0.125 0.875 28 H 0.062 0.938 29 H 0.027 0.973 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.045 0.955 33 H 0.399 0.601 34 H 0.416 0.584 35 H 0.135 0.865 36 H 0.127 0.873 37 H 0.113 0.887 38 H 0.285 0.715 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.590 16.623 2.389 19.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.365 5.365 3 C 0.015 3.985 4 C -0.173 4.173 5 C 0.003 3.997 6 O -0.409 6.409 7 C 0.392 3.608 8 O -0.497 6.497 9 N -0.320 5.320 10 C 0.070 3.930 11 C -0.257 4.257 12 C -0.115 4.115 13 C -0.206 4.206 14 C 0.080 3.920 15 C -0.538 4.538 16 H 0.076 0.924 17 C -0.179 4.179 18 N -0.466 5.466 19 Si 0.806 3.194 20 H -0.186 1.186 21 H -0.184 1.184 22 H -0.193 1.193 23 C -0.247 4.247 24 H 0.095 0.905 25 H 0.121 0.879 26 H 0.088 0.912 27 H 0.142 0.858 28 H 0.080 0.920 29 H 0.046 0.954 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.249 0.751 34 H 0.255 0.745 35 H 0.153 0.847 36 H 0.144 0.856 37 H 0.131 0.869 38 H 0.096 0.904 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.114 15.897 2.227 18.973 hybrid contribution 0.828 0.157 -0.556 1.009 sum -9.287 16.054 1.671 18.621 Atomic orbital electron populations 1.22070 0.76832 1.04633 1.03567 1.47108 1.08152 1.03613 1.77606 1.21293 0.97832 0.83753 0.95634 1.21859 1.00974 0.96562 0.97900 1.22079 0.98998 0.95416 0.83170 1.86441 1.80436 1.46208 1.27801 1.16253 0.85076 0.81524 0.77973 1.90936 1.13942 1.86479 1.58333 1.42473 1.10261 1.02752 1.76491 1.17355 0.93021 0.85122 0.97520 1.20532 1.03209 0.93719 1.08287 1.20900 0.94648 0.96864 0.99092 1.21558 0.97602 1.00314 1.01140 1.17878 0.93330 0.91252 0.89564 1.19648 1.01456 0.97242 1.35437 0.92395 1.26649 1.01495 0.94044 0.95758 1.69813 1.37390 1.01624 1.37806 0.85223 0.77166 0.78452 0.78581 1.18563 1.18357 1.19306 1.21229 0.97244 0.98724 1.07538 0.90468 0.87942 0.91165 0.85753 0.91966 0.95399 0.90380 0.90055 0.93630 0.75115 0.74463 0.84731 0.85557 0.86941 0.90415 0.89542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.02 10.24 127.77 1.31 2.33 16 2 N -0.63 -16.08 2.87 -864.93 -2.49 -18.56 16 3 C 0.14 3.00 5.41 86.38 0.47 3.46 16 4 C -0.13 -3.13 5.91 30.59 0.18 -2.95 16 5 C 0.08 1.47 7.05 71.98 0.51 1.98 16 6 O -0.60 -12.36 13.66 -148.98 -2.04 -14.39 16 7 C 0.69 26.34 8.12 179.05 1.45 27.79 16 8 O -0.62 -30.63 13.36 -4.00 -0.05 -30.68 16 9 N -0.67 -24.46 5.21 -317.32 -1.65 -26.11 16 10 C 0.16 7.65 6.29 38.10 0.24 7.89 16 11 C -0.24 -10.04 9.97 22.58 0.23 -9.82 16 12 C -0.10 -4.46 10.02 22.20 0.22 -4.24 16 13 C -0.19 -10.30 8.67 22.75 0.20 -10.10 16 14 C 0.08 4.92 5.55 -21.30 -0.12 4.80 16 15 C -0.51 -30.72 9.04 23.46 0.21 -30.51 16 16 H 0.06 3.54 7.85 -2.91 -0.02 3.52 16 17 C 0.03 1.79 5.42 85.25 0.46 2.25 16 18 N -0.84 -46.43 10.61 21.82 0.23 -46.20 16 19 Si 0.98 42.22 29.56 68.60 2.03 44.25 16 20 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 21 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 22 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 23 C -0.23 -12.77 8.43 22.85 0.19 -12.57 16 24 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.10 0.92 8.07 -2.39 -0.02 0.90 16 26 H 0.07 0.98 6.30 -2.39 -0.02 0.96 16 27 H 0.12 1.52 8.07 -2.39 -0.02 1.50 16 28 H 0.06 1.69 7.42 -2.39 -0.02 1.68 16 29 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.40 4.02 9.12 -74.06 -0.68 3.34 16 34 H 0.42 11.13 6.52 -92.71 -0.60 10.53 16 35 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 36 H 0.13 4.92 8.06 -2.91 -0.02 4.90 16 37 H 0.11 6.49 6.15 -2.91 -0.02 6.47 16 38 H 0.29 14.27 8.30 -92.71 -0.77 13.50 16 39 H 0.09 5.27 6.23 -2.91 -0.02 5.26 16 Total: -1.00 -81.14 327.56 1.38 -79.76 By element: Atomic # 1 Polarization: 31.83 SS G_CDS: -0.20 Total: 31.63 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: 5.55 Total: -19.70 kcal Atomic # 7 Polarization: -86.96 SS G_CDS: -3.91 Total: -90.87 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: -2.09 Total: -45.07 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -81.14 1.38 -79.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677654081.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.414 kcal (2) G-P(sol) polarization free energy of solvation -81.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds