Wall clock time and date at job start Tue Mar 31 2020 01:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00370 * 2 1 4 4 C 1.52997 * 109.47007 * 270.20358 * 3 2 1 5 5 H 1.09004 * 112.73914 * 43.11669 * 4 3 2 6 6 C 1.53500 * 113.52094 * 272.32092 * 4 3 2 7 7 C 1.53754 * 83.25653 * 218.97392 * 6 4 3 8 8 N 1.47068 * 87.89088 * 26.23851 * 7 6 4 9 9 C 1.36939 * 136.05649 * 152.95877 * 8 7 6 10 10 H 1.08002 * 119.99476 * 176.85320 * 9 8 7 11 11 C 1.38810 * 119.99997 * 357.13020 * 9 8 7 12 12 N 1.31620 * 120.00154 * 359.72516 * 11 9 8 13 13 Si 1.86803 * 119.99732 * 179.72187 * 11 9 8 14 14 H 1.48497 * 109.47282 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46826 * 120.00121 * 13 11 9 16 16 H 1.48501 * 109.46999 * 240.00141 * 13 11 9 17 17 C 1.34778 * 119.99972 * 179.97438 * 2 1 3 18 18 O 1.21277 * 120.00128 * 180.02562 * 17 2 1 19 19 C 1.50703 * 119.99858 * 0.02562 * 17 2 1 20 20 C 1.50695 * 109.47251 * 179.97438 * 19 17 2 21 21 C 1.34515 * 125.79110 * 89.71852 * 20 19 17 22 22 C 1.41386 * 106.84109 * 179.89351 * 21 20 19 23 23 C 1.34506 * 106.84094 * 0.36692 * 22 21 20 24 24 O 1.34306 * 125.78872 * 270.02820 * 20 19 17 25 25 H 1.09009 * 109.46669 * 93.43145 * 1 2 3 26 26 H 1.08992 * 109.47660 * 213.43423 * 1 2 3 27 27 H 1.08997 * 109.47265 * 333.43897 * 1 2 3 28 28 H 1.09002 * 109.47648 * 150.20166 * 3 2 1 29 29 H 1.09004 * 109.47086 * 30.20604 * 3 2 1 30 30 H 1.09001 * 114.20356 * 332.73077 * 6 4 3 31 31 H 1.08995 * 114.20258 * 105.35794 * 6 4 3 32 32 H 1.09004 * 113.46944 * 271.50063 * 7 6 4 33 33 H 1.09008 * 113.55100 * 140.98947 * 7 6 4 34 34 H 0.96993 * 119.99806 * 179.97438 * 12 11 9 35 35 H 1.08996 * 109.47134 * 300.00346 * 19 17 2 36 36 H 1.09002 * 109.46992 * 60.00262 * 19 17 2 37 37 H 1.07998 * 126.57975 * 0.02562 * 21 20 19 38 38 H 1.08003 * 126.57968 * 180.16717 * 22 21 20 39 39 H 1.08002 * 125.78856 * 179.79435 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4481 1.7128 -1.4425 5 1 1.5753 1.5800 -2.0819 6 6 3.7393 1.1410 -2.0440 7 6 3.8519 2.5400 -2.6717 8 7 3.0528 3.0494 -1.5471 9 6 2.9240 4.2441 -0.8903 10 1 2.1959 4.3498 -0.0996 11 6 3.7252 5.3208 -1.2446 12 7 4.6125 5.1919 -2.2082 13 14 3.5441 6.9527 -0.3538 14 1 2.4851 6.8372 0.6807 15 1 4.8320 7.3084 0.2944 16 1 3.1718 8.0098 -1.3281 17 6 2.1388 -1.1672 0.0005 18 8 3.3516 -1.1673 0.0010 19 6 1.3853 -2.4723 0.0005 20 6 2.3645 -3.6178 0.0005 21 6 2.8798 -4.2123 1.0916 22 6 3.7450 -5.2318 0.6325 23 6 3.7131 -5.1940 -0.7116 24 8 2.8753 -4.2144 -1.0889 25 1 -0.3633 -0.0615 -1.0259 26 1 -0.3634 -0.8575 0.5662 27 1 -0.3634 0.9192 0.4595 28 1 3.1515 1.1375 0.5107 29 1 1.6101 2.0274 0.5170 30 1 4.5120 0.9135 -1.3096 31 1 3.5797 0.3385 -2.7641 32 1 3.3493 2.6253 -3.6352 33 1 4.8705 2.9279 -2.6913 34 1 5.1720 5.9444 -2.4560 35 1 0.7583 -2.5298 0.8902 36 1 0.7590 -2.5302 -0.8897 37 1 2.6708 -3.9606 2.1209 38 1 4.3235 -5.9087 1.2438 39 1 4.2670 -5.8418 -1.3750 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691666282.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:33 Heat of formation + Delta-G solvation = 48.828219 kcal Electronic energy + Delta-G solvation = -21634.577331 eV Core-core repulsion = 18353.650429 eV Total energy + Delta-G solvation = -3280.926902 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.57279 -39.73944 -37.83623 -35.21769 -33.20569 -32.32146 -32.01707 -28.78257 -27.83341 -27.14557 -25.87980 -23.33791 -22.36411 -21.78022 -20.66434 -19.18170 -19.01400 -17.39791 -17.13773 -16.65154 -15.95621 -15.69449 -15.50868 -14.73282 -14.53085 -13.86535 -13.71085 -13.35583 -13.11145 -12.85146 -12.77011 -12.68914 -12.67451 -12.12479 -11.93476 -11.81189 -11.43572 -11.03235 -10.83196 -10.69866 -10.34898 -9.92668 -9.81085 -9.70595 -9.68090 -9.39594 -8.74815 -8.47925 -8.26897 -6.82027 -5.71590 -3.05006 1.68215 2.57146 2.76873 2.90466 3.29714 3.40600 3.44906 3.48113 4.47121 4.48523 4.66203 4.87853 4.98086 5.05233 5.14987 5.21156 5.31380 5.40480 5.51157 5.66015 5.67120 5.76179 5.86992 5.93689 6.04504 6.06716 6.12292 6.46366 6.47411 6.58899 6.70406 6.85857 6.87444 7.10921 7.31729 7.50917 7.59914 7.66683 8.04168 8.35541 9.07184 9.74751 10.70725 11.45279 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031559 B = 0.003785 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.014625 B = 7396.127196 C = 7755.557723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.611 5.611 3 C 0.116 3.884 4 C 0.131 3.869 5 H 0.040 0.960 6 C -0.153 4.153 7 C 0.148 3.852 8 N -0.601 5.601 9 C -0.218 4.218 10 H 0.079 0.921 11 C -0.008 4.008 12 N -0.917 5.917 13 Si 0.911 3.089 14 H -0.280 1.280 15 H -0.290 1.290 16 H -0.291 1.291 17 C 0.510 3.490 18 O -0.519 6.519 19 C -0.061 4.061 20 C 0.010 3.990 21 C -0.199 4.199 22 C -0.215 4.215 23 C -0.040 4.040 24 O -0.171 6.171 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.047 0.953 32 H 0.020 0.980 33 H 0.073 0.927 34 H 0.252 0.748 35 H 0.120 0.880 36 H 0.109 0.891 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.759 -19.337 4.765 21.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.346 5.346 3 C -0.006 4.006 4 C 0.022 3.978 5 H 0.057 0.943 6 C -0.192 4.192 7 C 0.022 3.978 8 N -0.327 5.327 9 C -0.345 4.345 10 H 0.097 0.903 11 C -0.204 4.204 12 N -0.564 5.564 13 Si 0.741 3.259 14 H -0.205 1.205 15 H -0.217 1.217 16 H -0.218 1.218 17 C 0.296 3.704 18 O -0.394 6.394 19 C -0.101 4.101 20 C -0.040 4.040 21 C -0.219 4.219 22 C -0.234 4.234 23 C -0.107 4.107 24 O -0.067 6.067 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.038 0.962 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.138 0.862 36 H 0.127 0.873 37 H 0.163 0.837 38 H 0.164 0.836 39 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -8.097 -18.857 4.556 21.022 hybrid contribution -0.184 0.926 0.480 1.060 sum -8.282 -17.931 5.036 20.383 Atomic orbital electron populations 1.21827 0.79938 1.03042 1.01882 1.47880 1.06764 1.06487 1.73432 1.21943 0.97276 0.82140 0.99283 1.22435 0.95078 0.87014 0.93226 0.94317 1.23650 0.98287 0.97056 1.00178 1.22155 0.97882 0.87981 0.89758 1.45636 1.46107 1.05989 1.35003 1.18922 1.16531 0.86371 1.12671 0.90281 1.24789 0.98656 0.98107 0.98881 1.69852 1.24771 1.30477 1.31310 0.86065 0.77329 0.83792 0.78666 1.20496 1.21687 1.21810 1.20251 0.88188 0.84730 0.77249 1.90758 1.13539 1.86894 1.48179 1.20159 0.95716 0.88205 1.05981 1.21540 1.00606 0.97434 0.84459 1.21491 1.01672 0.99469 0.99232 1.21777 1.04181 1.02580 0.94837 1.23971 0.97112 0.93548 0.96119 1.83998 1.48116 1.39696 1.34881 0.92461 0.91535 0.90630 0.89589 0.90805 0.90022 0.93441 0.96202 0.90825 0.93744 0.86235 0.87264 0.83729 0.83603 0.78230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 10.22 59.84 0.61 1.34 16 2 N -0.61 -8.73 2.87 -181.58 -0.52 -9.25 16 3 C 0.12 2.14 5.40 -4.05 -0.02 2.12 16 4 C 0.13 2.78 4.31 -72.40 -0.31 2.47 16 5 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 6 C -0.15 -3.34 7.47 -26.08 -0.19 -3.53 16 7 C 0.15 3.74 7.48 -8.38 -0.06 3.67 16 8 N -0.60 -15.82 3.65 -176.83 -0.64 -16.46 16 9 C -0.22 -6.12 10.55 -15.06 -0.16 -6.28 16 10 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 11 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 12 N -0.92 -27.90 11.45 55.49 0.64 -27.27 16 13 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 16 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 17 C 0.51 7.64 7.67 -10.98 -0.08 7.55 16 18 O -0.52 -10.15 15.04 5.56 0.08 -10.06 16 19 C -0.06 -0.64 4.83 -29.04 -0.14 -0.78 16 20 C 0.01 0.13 5.81 -35.63 -0.21 -0.08 16 21 C -0.20 -2.42 10.81 -39.70 -0.43 -2.85 16 22 C -0.21 -2.38 10.91 -39.70 -0.43 -2.81 16 23 C -0.04 -0.44 12.09 29.41 0.36 -0.08 16 24 O -0.17 -2.33 10.65 5.69 0.06 -2.27 16 25 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 26 H 0.07 0.42 6.58 -51.93 -0.34 0.08 16 27 H 0.07 0.70 7.85 -51.93 -0.41 0.29 16 28 H 0.09 1.79 7.13 -51.93 -0.37 1.42 16 29 H 0.07 1.33 7.87 -51.93 -0.41 0.92 16 30 H 0.08 1.89 7.93 -51.93 -0.41 1.48 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 2.05 7.00 -51.92 -0.36 1.69 16 34 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.12 0.85 7.40 -51.93 -0.38 0.47 16 36 H 0.11 0.93 8.11 -51.93 -0.42 0.51 16 37 H 0.14 1.50 8.06 -52.49 -0.42 1.07 16 38 H 0.15 1.25 8.06 -52.48 -0.42 0.83 16 39 H 0.20 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 330.34 15.07 4.98 4.98 Total: -1.00 -35.50 330.34 -7.22 -42.72 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -5.61 Total: -0.11 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -1.17 Total: 0.43 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: -0.53 Total: -52.98 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.14 Total: -12.33 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.50 -7.22 -42.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691666282.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.547 kcal (2) G-P(sol) polarization free energy of solvation -35.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds