Wall clock time and date at job start Tue Mar 31 2020 01:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00370 * 2 1 4 4 C 1.52997 * 109.47007 * 270.20358 * 3 2 1 5 5 H 1.09004 * 112.73914 * 43.11669 * 4 3 2 6 6 C 1.53500 * 113.52094 * 272.32092 * 4 3 2 7 7 C 1.53754 * 83.25653 * 218.97392 * 6 4 3 8 8 N 1.47068 * 87.89088 * 26.23851 * 7 6 4 9 9 C 1.36939 * 136.05649 * 152.95877 * 8 7 6 10 10 H 1.08002 * 119.99476 * 176.85320 * 9 8 7 11 11 C 1.38810 * 119.99997 * 357.13020 * 9 8 7 12 12 N 1.31620 * 120.00154 * 359.72516 * 11 9 8 13 13 Si 1.86803 * 119.99732 * 179.72187 * 11 9 8 14 14 H 1.48497 * 109.47282 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46826 * 120.00121 * 13 11 9 16 16 H 1.48501 * 109.46999 * 240.00141 * 13 11 9 17 17 C 1.34778 * 119.99972 * 179.97438 * 2 1 3 18 18 O 1.21277 * 120.00128 * 180.02562 * 17 2 1 19 19 C 1.50703 * 119.99858 * 0.02562 * 17 2 1 20 20 C 1.50695 * 109.47251 * 179.97438 * 19 17 2 21 21 C 1.34515 * 125.79110 * 89.71852 * 20 19 17 22 22 C 1.41386 * 106.84109 * 179.89351 * 21 20 19 23 23 C 1.34506 * 106.84094 * 0.36692 * 22 21 20 24 24 O 1.34306 * 125.78872 * 270.02820 * 20 19 17 25 25 H 1.09009 * 109.46669 * 93.43145 * 1 2 3 26 26 H 1.08992 * 109.47660 * 213.43423 * 1 2 3 27 27 H 1.08997 * 109.47265 * 333.43897 * 1 2 3 28 28 H 1.09002 * 109.47648 * 150.20166 * 3 2 1 29 29 H 1.09004 * 109.47086 * 30.20604 * 3 2 1 30 30 H 1.09001 * 114.20356 * 332.73077 * 6 4 3 31 31 H 1.08995 * 114.20258 * 105.35794 * 6 4 3 32 32 H 1.09004 * 113.46944 * 271.50063 * 7 6 4 33 33 H 1.09008 * 113.55100 * 140.98947 * 7 6 4 34 34 H 0.96993 * 119.99806 * 179.97438 * 12 11 9 35 35 H 1.08996 * 109.47134 * 300.00346 * 19 17 2 36 36 H 1.09002 * 109.46992 * 60.00262 * 19 17 2 37 37 H 1.07998 * 126.57975 * 0.02562 * 21 20 19 38 38 H 1.08003 * 126.57968 * 180.16717 * 22 21 20 39 39 H 1.08002 * 125.78856 * 179.79435 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4481 1.7128 -1.4425 5 1 1.5753 1.5800 -2.0819 6 6 3.7393 1.1410 -2.0440 7 6 3.8519 2.5400 -2.6717 8 7 3.0528 3.0494 -1.5471 9 6 2.9240 4.2441 -0.8903 10 1 2.1959 4.3498 -0.0996 11 6 3.7252 5.3208 -1.2446 12 7 4.6125 5.1919 -2.2082 13 14 3.5441 6.9527 -0.3538 14 1 2.4851 6.8372 0.6807 15 1 4.8320 7.3084 0.2944 16 1 3.1718 8.0098 -1.3281 17 6 2.1388 -1.1672 0.0005 18 8 3.3516 -1.1673 0.0010 19 6 1.3853 -2.4723 0.0005 20 6 2.3645 -3.6178 0.0005 21 6 2.8798 -4.2123 1.0916 22 6 3.7450 -5.2318 0.6325 23 6 3.7131 -5.1940 -0.7116 24 8 2.8753 -4.2144 -1.0889 25 1 -0.3633 -0.0615 -1.0259 26 1 -0.3634 -0.8575 0.5662 27 1 -0.3634 0.9192 0.4595 28 1 3.1515 1.1375 0.5107 29 1 1.6101 2.0274 0.5170 30 1 4.5120 0.9135 -1.3096 31 1 3.5797 0.3385 -2.7641 32 1 3.3493 2.6253 -3.6352 33 1 4.8705 2.9279 -2.6913 34 1 5.1720 5.9444 -2.4560 35 1 0.7583 -2.5298 0.8902 36 1 0.7590 -2.5302 -0.8897 37 1 2.6708 -3.9606 2.1209 38 1 4.3235 -5.9087 1.2438 39 1 4.2670 -5.8418 -1.3750 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691666282.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:32 Heat of formation + Delta-G solvation = 25.442803 kcal Electronic energy + Delta-G solvation = -21635.591399 eV Core-core repulsion = 18353.650429 eV Total energy + Delta-G solvation = -3281.940970 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.43233 -41.01769 -39.59538 -36.44429 -34.31599 -34.05946 -33.07463 -30.12380 -29.89526 -28.03062 -26.96508 -25.40675 -23.97729 -22.63772 -21.64375 -21.04549 -20.15895 -18.76843 -18.28056 -18.04409 -17.28324 -16.94878 -16.55023 -16.45323 -15.86195 -15.57264 -15.12244 -14.74899 -14.08142 -13.96998 -13.84730 -13.69203 -13.60805 -13.50006 -13.44252 -13.04195 -12.98224 -12.67711 -12.64545 -12.48003 -12.21292 -11.79812 -11.66261 -11.20075 -10.92063 -10.83203 -10.75824 -9.58535 -9.33701 -8.91738 -7.88664 -5.23985 0.80480 1.45391 1.47710 1.57440 1.66428 1.71529 2.03742 2.28175 2.49740 3.30993 3.42029 3.62399 3.82389 3.89405 4.17695 4.19246 4.23748 4.33610 4.37025 4.41436 4.42973 4.51953 4.68568 4.81735 4.84359 4.95687 5.00094 5.02570 5.05592 5.07272 5.21923 5.26326 5.47681 5.52080 5.66417 5.73033 5.93207 6.25560 6.47592 6.89440 7.23774 7.60655 8.61791 9.29135 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031559 B = 0.003785 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.014625 B = 7396.127196 C = 7755.557723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.609 5.609 3 C 0.131 3.869 4 C 0.139 3.861 5 H 0.056 0.944 6 C -0.130 4.130 7 C 0.144 3.856 8 N -0.628 5.628 9 C -0.222 4.222 10 H 0.093 0.907 11 C -0.073 4.073 12 N -0.957 5.957 13 Si 0.982 3.018 14 H -0.258 1.258 15 H -0.295 1.295 16 H -0.293 1.293 17 C 0.504 3.496 18 O -0.575 6.575 19 C -0.049 4.049 20 C -0.015 4.015 21 C -0.212 4.212 22 C -0.230 4.230 23 C -0.046 4.046 24 O -0.194 6.194 25 H 0.068 0.932 26 H 0.107 0.893 27 H 0.078 0.922 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.020 0.980 33 H 0.038 0.962 34 H 0.247 0.753 35 H 0.160 0.840 36 H 0.135 0.865 37 H 0.157 0.843 38 H 0.167 0.833 39 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.240 -20.665 5.864 24.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.342 5.342 3 C 0.006 3.994 4 C 0.032 3.968 5 H 0.073 0.927 6 C -0.169 4.169 7 C 0.018 3.982 8 N -0.355 5.355 9 C -0.350 4.350 10 H 0.110 0.890 11 C -0.265 4.265 12 N -0.606 5.606 13 Si 0.810 3.190 14 H -0.182 1.182 15 H -0.223 1.223 16 H -0.220 1.220 17 C 0.293 3.707 18 O -0.453 6.453 19 C -0.088 4.088 20 C -0.065 4.065 21 C -0.232 4.232 22 C -0.249 4.249 23 C -0.113 4.113 24 O -0.091 6.091 25 H 0.087 0.913 26 H 0.125 0.875 27 H 0.097 0.903 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.038 0.962 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.177 0.823 36 H 0.153 0.847 37 H 0.175 0.825 38 H 0.184 0.816 39 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -10.655 -20.225 5.676 23.554 hybrid contribution 0.594 1.234 0.127 1.375 sum -10.061 -18.991 5.803 22.261 Atomic orbital electron populations 1.22190 0.76517 1.05188 1.03503 1.47913 1.08683 1.04732 1.72852 1.21435 0.96782 0.84477 0.96671 1.22505 0.94843 0.84131 0.95343 0.92710 1.23366 0.98257 0.95633 0.99625 1.22113 0.95988 0.90029 0.90107 1.45945 1.47044 1.07249 1.35223 1.19396 1.16031 0.87019 1.12564 0.88965 1.25710 0.98792 1.01907 1.00116 1.70062 1.26082 1.31149 1.33346 0.84959 0.77368 0.79001 0.77703 1.18235 1.22260 1.22045 1.21097 0.87827 0.86095 0.75722 1.90739 1.16191 1.87751 1.50663 1.20262 0.95072 0.84437 1.09046 1.22013 1.01639 0.98363 0.84491 1.21858 1.01678 0.99709 0.99911 1.22163 1.04420 1.02922 0.95363 1.24720 0.96478 0.93151 0.96973 1.83983 1.48846 1.40529 1.35726 0.91299 0.87492 0.90286 0.92676 0.90210 0.91888 0.91322 0.96240 0.94386 0.94437 0.82290 0.84730 0.82494 0.81568 0.75079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.00 10.22 127.77 1.31 2.31 16 2 N -0.61 -15.93 2.87 -846.78 -2.43 -18.36 16 3 C 0.13 4.70 5.40 86.38 0.47 5.17 16 4 C 0.14 5.81 4.31 41.79 0.18 5.99 16 5 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 6 C -0.13 -5.74 7.47 31.02 0.23 -5.51 16 7 C 0.14 7.47 7.48 83.26 0.62 8.09 16 8 N -0.63 -33.39 3.65 -713.36 -2.60 -35.99 16 9 C -0.22 -12.54 10.55 84.03 0.89 -11.65 16 10 H 0.09 4.82 7.83 -2.91 -0.02 4.80 16 11 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 12 N -0.96 -60.07 11.45 21.65 0.25 -59.83 16 13 Si 0.98 46.30 29.55 68.60 2.03 48.32 16 14 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 15 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 16 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 17 C 0.50 14.16 7.67 87.66 0.67 14.83 16 18 O -0.57 -22.47 15.04 -3.02 -0.05 -22.51 16 19 C -0.05 -0.88 4.83 29.10 0.14 -0.73 16 20 C -0.01 -0.36 5.81 24.83 0.14 -0.21 16 21 C -0.21 -4.83 10.81 22.19 0.24 -4.59 16 22 C -0.23 -4.76 10.91 22.19 0.24 -4.52 16 23 C -0.05 -0.95 12.09 66.97 0.81 -0.14 16 24 O -0.19 -5.04 10.65 -2.57 -0.03 -5.07 16 25 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 26 H 0.11 0.75 6.58 -2.39 -0.02 0.74 16 27 H 0.08 1.16 7.85 -2.39 -0.02 1.14 16 28 H 0.05 2.33 7.13 -2.39 -0.02 2.31 16 29 H 0.08 2.76 7.87 -2.39 -0.02 2.74 16 30 H 0.06 3.02 7.93 -2.39 -0.02 3.00 16 31 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.04 2.23 7.00 -2.38 -0.02 2.21 16 34 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 35 H 0.16 1.49 7.40 -2.39 -0.02 1.48 16 36 H 0.13 1.72 8.11 -2.39 -0.02 1.70 16 37 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 38 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 39 H 0.23 2.75 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -80.39 330.34 4.61 -75.78 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 1.04 Total: 12.38 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 6.41 Total: 5.27 kcal Atomic # 7 Polarization: -109.39 SS G_CDS: -4.79 Total: -114.18 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.07 Total: -27.58 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.32 kcal Total: -80.39 4.61 -75.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691666282.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.222 kcal (2) G-P(sol) polarization free energy of solvation -80.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds