Wall clock time and date at job start Tue Mar 31 2020 00:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47269 * 2 1 4 4 C 1.36935 * 119.99564 * 264.28495 * 3 2 1 5 5 H 1.08001 * 120.00038 * 188.63515 * 4 3 2 6 6 C 1.38807 * 120.00090 * 8.63937 * 4 3 2 7 7 N 1.31622 * 120.00519 * 24.59897 * 6 4 3 8 8 Si 1.86802 * 119.99837 * 204.60373 * 6 4 3 9 9 H 1.48501 * 109.47448 * 85.02319 * 8 6 4 10 10 H 1.48508 * 109.47022 * 205.02355 * 8 6 4 11 11 H 1.48500 * 109.47061 * 325.02255 * 8 6 4 12 12 C 1.46499 * 120.00208 * 84.28094 * 3 2 1 13 13 C 1.52999 * 109.47499 * 270.00395 * 12 3 2 14 14 N 1.46496 * 109.47137 * 180.02562 * 13 12 3 15 15 C 1.34781 * 119.99628 * 179.97438 * 14 13 12 16 16 O 1.21773 * 120.00242 * 0.02562 * 15 14 13 17 17 C 1.41553 * 119.99757 * 179.97438 * 15 14 13 18 18 C 1.35620 * 120.00001 * 179.97438 * 17 15 14 19 19 C 1.41608 * 119.99995 * 179.97438 * 18 17 15 20 20 C 1.37956 * 126.10217 * 180.02562 * 19 18 17 21 21 C 1.40314 * 106.52460 * 179.97438 * 20 19 18 22 22 C 1.35149 * 107.20760 * 359.97438 * 21 20 19 23 23 O 1.34014 * 109.03686 * 359.77452 * 22 21 20 24 24 H 1.09001 * 109.47274 * 180.02562 * 1 2 3 25 25 H 1.08989 * 109.47479 * 300.00726 * 1 2 3 26 26 H 1.09006 * 109.46978 * 60.00656 * 1 2 3 27 27 H 1.08996 * 109.47841 * 239.99170 * 2 1 3 28 28 H 1.09006 * 109.46978 * 119.99344 * 2 1 3 29 29 H 0.96997 * 120.00028 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.46810 * 150.00247 * 12 3 2 31 31 H 1.09003 * 109.47016 * 30.00830 * 12 3 2 32 32 H 1.09004 * 109.47114 * 59.99644 * 13 12 3 33 33 H 1.09001 * 109.46828 * 300.00209 * 13 12 3 34 34 H 0.97002 * 120.00273 * 0.02562 * 14 13 12 35 35 H 1.08005 * 119.99681 * 0.02562 * 17 15 14 36 36 H 1.08003 * 120.00296 * 0.02562 * 18 17 15 37 37 H 1.07995 * 126.73644 * 359.97438 * 20 19 18 38 38 H 1.07999 * 126.39548 * 179.97438 * 21 20 19 39 39 H 1.08007 * 125.48251 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3579 1.9873 -1.1800 5 1 2.8471 2.9501 -1.1714 6 6 2.0733 1.3642 -2.3873 7 7 1.0960 0.4855 -2.4602 8 14 3.0773 1.7727 -3.9087 9 1 4.3049 0.9375 -3.9307 10 1 2.2692 1.4971 -5.1238 11 1 3.4559 3.2084 -3.8811 12 6 2.1434 2.1140 1.2624 13 6 0.8337 2.8475 1.5582 14 7 0.9590 3.5808 2.8203 15 6 -0.0783 4.3055 3.2844 16 8 -1.1198 4.3503 2.6549 17 6 0.0425 5.0135 4.5041 18 6 -1.0010 5.7432 4.9709 19 6 -0.8803 6.4511 6.1914 20 6 -1.8564 7.2278 6.7806 21 6 -1.3030 7.7320 7.9673 22 6 -0.0416 7.2546 8.0545 23 8 0.2078 6.4811 6.9889 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8898 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8898 28 1 1.8933 -0.5138 0.8901 29 1 0.8970 0.0504 -3.3040 30 1 2.9551 2.8372 1.1838 31 1 2.3578 1.4134 2.0695 32 1 0.0219 2.1243 1.6367 33 1 0.6193 3.5481 0.7511 34 1 1.7887 3.5453 3.3215 35 1 0.9661 4.9733 5.0626 36 1 -1.9245 5.7837 4.4122 37 1 -2.8512 7.4116 6.4026 38 1 -1.7934 8.3804 8.6782 39 1 0.6526 7.4605 8.8559 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714576208.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:58 Heat of formation + Delta-G solvation = 25.573530 kcal Electronic energy + Delta-G solvation = -20570.332554 eV Core-core repulsion = 17288.397253 eV Total energy + Delta-G solvation = -3281.935301 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.82686 -39.55227 -36.45790 -34.48942 -34.06015 -33.32655 -31.40875 -29.85963 -29.17516 -27.48716 -24.63879 -23.55473 -22.18970 -21.66467 -20.75540 -20.32518 -19.38834 -17.78474 -16.99207 -16.69220 -16.36845 -15.70247 -14.99369 -14.98299 -14.62458 -13.93884 -13.77759 -13.41083 -13.30660 -13.08728 -12.69302 -12.59387 -12.26217 -12.06772 -11.83335 -11.37816 -11.09933 -10.82051 -10.76310 -10.50785 -10.32085 -10.20573 -9.92278 -9.83275 -9.61616 -9.36669 -8.62566 -8.36332 -8.16035 -6.92627 -5.76114 -3.08947 0.28784 1.87647 2.48668 2.65702 3.40770 3.47479 3.48866 3.58630 3.61109 4.47228 4.53808 4.61631 4.69623 4.96556 5.23402 5.33893 5.36779 5.45797 5.57615 5.75270 5.81599 5.86937 5.92289 6.11461 6.18774 6.28065 6.56335 6.67951 6.73345 6.76632 6.93087 6.95505 7.13804 7.18901 7.67591 7.79081 7.83503 8.13827 8.35935 8.51593 9.23894 9.85506 10.29848 11.27530 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036606 B = 0.002750 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.714580 B =10177.930018 C =10359.215650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.166 3.834 3 N -0.592 5.592 4 C -0.254 4.254 5 H 0.075 0.925 6 C -0.002 4.002 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.289 1.289 10 H -0.293 1.293 11 H -0.282 1.282 12 C 0.143 3.857 13 C 0.088 3.912 14 N -0.718 5.718 15 C 0.537 3.463 16 O -0.549 6.549 17 C -0.191 4.191 18 C -0.006 4.006 19 C -0.001 4.001 20 C -0.171 4.171 21 C -0.218 4.218 22 C -0.026 4.026 23 O -0.166 6.166 24 H 0.019 0.981 25 H 0.014 0.986 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.003 0.997 29 H 0.252 0.748 30 H 0.049 0.951 31 H 0.043 0.957 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.396 0.604 35 H 0.129 0.871 36 H 0.161 0.839 37 H 0.156 0.844 38 H 0.152 0.848 39 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.491 10.623 20.442 23.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.041 3.959 3 N -0.313 5.313 4 C -0.383 4.383 5 H 0.092 0.908 6 C -0.199 4.199 7 N -0.540 5.540 8 Si 0.730 3.270 9 H -0.216 1.216 10 H -0.219 1.219 11 H -0.207 1.207 12 C 0.015 3.985 13 C -0.037 4.037 14 N -0.369 5.369 15 C 0.326 3.674 16 O -0.430 6.430 17 C -0.212 4.212 18 C -0.026 4.026 19 C -0.050 4.050 20 C -0.190 4.190 21 C -0.237 4.237 22 C -0.095 4.095 23 O -0.061 6.061 24 H 0.039 0.961 25 H 0.033 0.967 26 H 0.109 0.891 27 H 0.107 0.893 28 H 0.022 0.978 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.229 0.771 35 H 0.147 0.853 36 H 0.178 0.822 37 H 0.174 0.826 38 H 0.170 0.830 39 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -1.974 10.348 19.709 22.348 hybrid contribution 0.593 0.387 -0.388 0.807 sum -1.381 10.735 19.321 22.146 Atomic orbital electron populations 1.22438 0.99159 0.98305 1.01293 1.20853 0.92559 0.84206 0.98295 1.44241 1.75579 1.10108 1.01355 1.19286 1.31648 1.03859 0.83465 0.90754 1.24751 0.97806 0.99954 0.97401 1.70164 1.27083 1.31756 1.24985 0.86334 0.80197 0.77855 0.82649 1.21579 1.21940 1.20742 1.20952 0.93694 0.94431 0.89457 1.22729 1.02104 0.95514 0.83364 1.46156 1.15638 1.49547 1.25516 1.17023 0.84266 0.80208 0.85866 1.90846 1.28403 1.63772 1.59953 1.22237 1.00373 1.00690 0.97898 1.20667 1.00018 0.92040 0.89856 1.19959 0.86172 1.04333 0.94579 1.22370 1.00457 0.99969 0.96187 1.21784 0.95700 1.05992 1.00226 1.24297 0.98456 0.95673 0.91041 1.84107 1.37723 1.55310 1.29004 0.96143 0.96702 0.89062 0.89294 0.97847 0.93720 0.93225 0.93904 0.91499 0.91438 0.77068 0.85339 0.82188 0.82621 0.83006 0.77790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.58 37.16 0.36 -3.25 16 2 C 0.17 4.00 5.64 -4.04 -0.02 3.97 16 3 N -0.59 -14.43 2.54 -173.24 -0.44 -14.87 16 4 C -0.25 -6.80 9.70 -15.06 -0.15 -6.95 16 5 H 0.07 1.96 7.93 -52.49 -0.42 1.55 16 6 C 0.00 -0.04 4.91 -17.43 -0.09 -0.13 16 7 N -0.89 -25.04 8.54 55.49 0.47 -24.57 16 8 Si 0.90 21.57 29.62 -169.99 -5.03 16.53 16 9 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.14 2.82 5.82 -4.04 -0.02 2.79 16 13 C 0.09 1.73 5.88 -4.04 -0.02 1.70 16 14 N -0.72 -11.13 5.55 -63.24 -0.35 -11.48 16 15 C 0.54 8.74 7.56 -14.99 -0.11 8.63 16 16 O -0.55 -11.22 16.11 5.12 0.08 -11.14 16 17 C -0.19 -2.38 9.41 -39.25 -0.37 -2.75 16 18 C -0.01 -0.07 9.39 -39.23 -0.37 -0.44 16 19 C 0.00 -0.01 6.84 -38.40 -0.26 -0.27 16 20 C -0.17 -1.53 10.90 -38.90 -0.42 -1.95 16 21 C -0.22 -1.62 10.87 -39.90 -0.43 -2.06 16 22 C -0.03 -0.18 12.06 29.63 0.36 0.17 16 23 O -0.17 -1.67 10.18 4.70 0.05 -1.63 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.01 0.32 5.98 -51.94 -0.31 0.01 16 26 H 0.09 2.46 6.28 -51.93 -0.33 2.13 16 27 H 0.09 2.37 5.87 -51.93 -0.31 2.07 16 28 H 0.00 0.07 7.97 -51.93 -0.41 -0.34 16 29 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.05 0.93 8.03 -51.93 -0.42 0.51 16 31 H 0.04 0.76 7.95 -51.93 -0.41 0.34 16 32 H 0.07 1.45 5.93 -51.93 -0.31 1.14 16 33 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.40 4.73 8.43 -40.82 -0.34 4.39 16 35 H 0.13 1.31 7.72 -52.48 -0.41 0.90 16 36 H 0.16 1.85 7.46 -52.48 -0.39 1.46 16 37 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.15 0.76 8.06 -52.49 -0.42 0.33 16 39 H 0.21 0.65 8.06 -52.48 -0.42 0.23 16 LS Contribution 330.73 15.07 4.98 4.98 Total: -1.00 -32.04 330.73 -7.10 -39.13 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -5.30 Total: 3.56 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -1.56 Total: -0.52 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: -0.32 Total: -50.92 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.13 Total: -12.76 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.04 -7.10 -39.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714576208.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.706 kcal (2) G-P(sol) polarization free energy of solvation -32.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds