Wall clock time and date at job start Tue Mar 31 2020 00:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47269 * 2 1 4 4 C 1.36935 * 119.99564 * 264.28495 * 3 2 1 5 5 H 1.08001 * 120.00038 * 188.63515 * 4 3 2 6 6 C 1.38807 * 120.00090 * 8.63937 * 4 3 2 7 7 N 1.31622 * 120.00519 * 24.59897 * 6 4 3 8 8 Si 1.86802 * 119.99837 * 204.60373 * 6 4 3 9 9 H 1.48501 * 109.47448 * 85.02319 * 8 6 4 10 10 H 1.48508 * 109.47022 * 205.02355 * 8 6 4 11 11 H 1.48500 * 109.47061 * 325.02255 * 8 6 4 12 12 C 1.46499 * 120.00208 * 84.28094 * 3 2 1 13 13 C 1.52999 * 109.47499 * 270.00395 * 12 3 2 14 14 N 1.46496 * 109.47137 * 180.02562 * 13 12 3 15 15 C 1.34781 * 119.99628 * 179.97438 * 14 13 12 16 16 O 1.21773 * 120.00242 * 0.02562 * 15 14 13 17 17 C 1.41553 * 119.99757 * 179.97438 * 15 14 13 18 18 C 1.35620 * 120.00001 * 179.97438 * 17 15 14 19 19 C 1.41608 * 119.99995 * 179.97438 * 18 17 15 20 20 C 1.37956 * 126.10217 * 180.02562 * 19 18 17 21 21 C 1.40314 * 106.52460 * 179.97438 * 20 19 18 22 22 C 1.35149 * 107.20760 * 359.97438 * 21 20 19 23 23 O 1.34014 * 109.03686 * 359.77452 * 22 21 20 24 24 H 1.09001 * 109.47274 * 180.02562 * 1 2 3 25 25 H 1.08989 * 109.47479 * 300.00726 * 1 2 3 26 26 H 1.09006 * 109.46978 * 60.00656 * 1 2 3 27 27 H 1.08996 * 109.47841 * 239.99170 * 2 1 3 28 28 H 1.09006 * 109.46978 * 119.99344 * 2 1 3 29 29 H 0.96997 * 120.00028 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.46810 * 150.00247 * 12 3 2 31 31 H 1.09003 * 109.47016 * 30.00830 * 12 3 2 32 32 H 1.09004 * 109.47114 * 59.99644 * 13 12 3 33 33 H 1.09001 * 109.46828 * 300.00209 * 13 12 3 34 34 H 0.97002 * 120.00273 * 0.02562 * 14 13 12 35 35 H 1.08005 * 119.99681 * 0.02562 * 17 15 14 36 36 H 1.08003 * 120.00296 * 0.02562 * 18 17 15 37 37 H 1.07995 * 126.73644 * 359.97438 * 20 19 18 38 38 H 1.07999 * 126.39548 * 179.97438 * 21 20 19 39 39 H 1.08007 * 125.48251 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3579 1.9873 -1.1800 5 1 2.8471 2.9501 -1.1714 6 6 2.0733 1.3642 -2.3873 7 7 1.0960 0.4855 -2.4602 8 14 3.0773 1.7727 -3.9087 9 1 4.3049 0.9375 -3.9307 10 1 2.2692 1.4971 -5.1238 11 1 3.4559 3.2084 -3.8811 12 6 2.1434 2.1140 1.2624 13 6 0.8337 2.8475 1.5582 14 7 0.9590 3.5808 2.8203 15 6 -0.0783 4.3055 3.2844 16 8 -1.1198 4.3503 2.6549 17 6 0.0425 5.0135 4.5041 18 6 -1.0010 5.7432 4.9709 19 6 -0.8803 6.4511 6.1914 20 6 -1.8564 7.2278 6.7806 21 6 -1.3030 7.7320 7.9673 22 6 -0.0416 7.2546 8.0545 23 8 0.2078 6.4811 6.9889 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8898 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8898 28 1 1.8933 -0.5138 0.8901 29 1 0.8970 0.0504 -3.3040 30 1 2.9551 2.8372 1.1838 31 1 2.3578 1.4134 2.0695 32 1 0.0219 2.1243 1.6367 33 1 0.6193 3.5481 0.7511 34 1 1.7887 3.5453 3.3215 35 1 0.9661 4.9733 5.0626 36 1 -1.9245 5.7837 4.4122 37 1 -2.8512 7.4116 6.4026 38 1 -1.7934 8.3804 8.6782 39 1 0.6526 7.4605 8.8559 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714576208.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:56 Heat of formation + Delta-G solvation = 4.992100 kcal Electronic energy + Delta-G solvation = -20571.225032 eV Core-core repulsion = 17288.397253 eV Total energy + Delta-G solvation = -3282.827779 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -43.48937 -40.87188 -38.24419 -35.88681 -35.15939 -33.98893 -33.30391 -31.55567 -30.35539 -28.97409 -26.19016 -24.97150 -23.28116 -22.80686 -22.21306 -21.67354 -20.47039 -18.80956 -18.54156 -17.92059 -17.06281 -17.01111 -16.72048 -16.47622 -15.68735 -15.56873 -15.32926 -15.05299 -14.37511 -13.91782 -13.88850 -13.74793 -13.68056 -13.52245 -13.27565 -13.08251 -12.88540 -12.67481 -12.28691 -12.19740 -11.82439 -11.71045 -11.56351 -11.34887 -11.10849 -10.84334 -10.38169 -10.05960 -8.94450 -8.88970 -7.80787 -5.14618 -0.58370 1.17298 1.49754 1.52028 1.58927 1.72187 2.02552 2.29537 2.44216 2.58599 3.28080 3.67517 3.83453 3.98633 4.07430 4.16004 4.23229 4.25964 4.37663 4.66181 4.68499 4.72098 4.89650 4.94962 5.02616 5.09351 5.10613 5.13842 5.20900 5.24267 5.32646 5.50137 5.54743 5.63050 5.80138 6.09410 6.13908 6.35768 6.61617 7.20664 7.28033 7.91025 8.30343 9.21028 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036606 B = 0.002750 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.714580 B =10177.930018 C =10359.215650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.167 3.833 3 N -0.607 5.607 4 C -0.262 4.262 5 H 0.074 0.926 6 C -0.052 4.052 7 N -0.917 5.917 8 Si 0.960 3.040 9 H -0.286 1.286 10 H -0.300 1.300 11 H -0.276 1.276 12 C 0.146 3.854 13 C 0.110 3.890 14 N -0.707 5.707 15 C 0.539 3.461 16 O -0.602 6.602 17 C -0.215 4.215 18 C 0.020 3.980 19 C -0.043 4.043 20 C -0.160 4.160 21 C -0.232 4.232 22 C -0.009 4.009 23 O -0.180 6.180 24 H 0.035 0.965 25 H 0.021 0.979 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.031 0.969 29 H 0.246 0.754 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.029 0.971 34 H 0.416 0.584 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.170 0.830 38 H 0.179 0.821 39 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.452 11.970 23.328 26.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.042 3.958 3 N -0.329 5.329 4 C -0.392 4.392 5 H 0.092 0.908 6 C -0.247 4.247 7 N -0.564 5.564 8 Si 0.789 3.211 9 H -0.213 1.213 10 H -0.227 1.227 11 H -0.201 1.201 12 C 0.018 3.982 13 C -0.017 4.017 14 N -0.358 5.358 15 C 0.330 3.670 16 O -0.486 6.486 17 C -0.236 4.236 18 C -0.001 4.001 19 C -0.091 4.091 20 C -0.179 4.179 21 C -0.250 4.250 22 C -0.078 4.078 23 O -0.076 6.076 24 H 0.054 0.946 25 H 0.039 0.961 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.253 0.747 35 H 0.171 0.829 36 H 0.171 0.829 37 H 0.187 0.813 38 H 0.196 0.804 39 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -0.891 11.709 22.640 25.504 hybrid contribution 0.191 0.130 -1.042 1.067 sum -0.700 11.839 21.598 24.640 Atomic orbital electron populations 1.22239 0.99143 0.98755 0.99710 1.20757 0.92519 0.84348 0.98139 1.44425 1.75687 1.10578 1.02215 1.19539 1.31177 1.03826 0.84620 0.90783 1.25433 0.98732 1.00651 0.99898 1.70333 1.28090 1.32891 1.25038 0.85390 0.78578 0.77777 0.79339 1.21282 1.22738 1.20117 1.21083 0.93662 0.95026 0.88389 1.22148 1.01232 0.94280 0.84051 1.45870 1.16680 1.49009 1.24269 1.17565 0.83283 0.79601 0.86510 1.90817 1.30376 1.65709 1.61721 1.21991 1.02107 1.02441 0.97037 1.20701 0.99221 0.90288 0.89843 1.19842 0.87391 1.06652 0.95223 1.22791 1.00663 0.98154 0.96276 1.22186 0.96019 1.06606 1.00204 1.25246 0.99084 0.93112 0.90322 1.84101 1.37695 1.56058 1.29723 0.94640 0.96054 0.92706 0.92106 0.95110 0.94404 0.91877 0.90995 0.93820 0.95254 0.74660 0.82922 0.82946 0.81278 0.80400 0.73820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.65 9.58 71.98 0.69 -5.96 16 2 C 0.17 8.05 5.64 86.38 0.49 8.54 16 3 N -0.61 -29.58 2.54 -702.01 -1.78 -31.36 16 4 C -0.26 -14.14 9.70 84.03 0.82 -13.33 16 5 H 0.07 3.91 7.93 -2.91 -0.02 3.89 16 6 C -0.05 -2.87 4.91 84.86 0.42 -2.46 16 7 N -0.92 -52.67 8.54 21.65 0.18 -52.48 16 8 Si 0.96 45.01 29.62 68.60 2.03 47.04 16 9 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 10 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 12 C 0.15 5.57 5.82 86.38 0.50 6.07 16 13 C 0.11 4.35 5.88 86.38 0.51 4.86 16 14 N -0.71 -21.64 5.55 -472.18 -2.62 -24.26 16 15 C 0.54 17.75 7.56 85.06 0.64 18.40 16 16 O -0.60 -25.62 16.11 -4.58 -0.07 -25.69 16 17 C -0.22 -5.25 9.41 22.48 0.21 -5.04 16 18 C 0.02 0.45 9.39 22.50 0.21 0.66 16 19 C -0.04 -0.83 6.84 23.03 0.16 -0.68 16 20 C -0.16 -2.50 10.90 22.71 0.25 -2.25 16 21 C -0.23 -2.64 10.87 22.06 0.24 -2.40 16 22 C -0.01 -0.10 12.06 67.11 0.81 0.71 16 23 O -0.18 -3.18 10.18 -6.11 -0.06 -3.24 16 24 H 0.03 1.52 8.14 -2.39 -0.02 1.51 16 25 H 0.02 0.95 5.98 -2.39 -0.01 0.94 16 26 H 0.05 3.04 6.28 -2.38 -0.01 3.02 16 27 H 0.06 3.28 5.87 -2.39 -0.01 3.27 16 28 H 0.03 1.30 7.97 -2.38 -0.02 1.28 16 29 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 30 H 0.06 2.25 8.03 -2.39 -0.02 2.23 16 31 H 0.07 2.36 7.95 -2.39 -0.02 2.34 16 32 H 0.04 1.93 5.93 -2.38 -0.01 1.92 16 33 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.42 9.25 8.43 -92.71 -0.78 8.47 16 35 H 0.15 2.87 7.72 -2.91 -0.02 2.85 16 36 H 0.15 3.63 7.46 -2.91 -0.02 3.61 16 37 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 38 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 39 H 0.25 0.33 8.06 -2.91 -0.02 0.31 16 Total: -1.00 -71.56 330.73 3.90 -67.66 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.28 Total: 15.20 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: 5.94 Total: 7.13 kcal Atomic # 7 Polarization: -103.88 SS G_CDS: -4.21 Total: -108.10 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.14 Total: -28.93 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -71.56 3.90 -67.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714576208.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.651 kcal (2) G-P(sol) polarization free energy of solvation -71.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds