Wall clock time and date at job start Tue Mar 31 2020 01:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 119.99601 * 2 1 4 4 C 1.52996 * 109.47323 * 270.00021 * 3 2 1 5 5 N 1.46506 * 109.46938 * 180.02562 * 4 3 2 6 6 C 1.36940 * 119.99544 * 180.02562 * 5 4 3 7 7 H 1.07997 * 120.00290 * 359.97438 * 6 5 4 8 8 C 1.38810 * 119.99786 * 179.97438 * 6 5 4 9 9 N 1.31622 * 120.00074 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00166 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46756 * 90.00224 * 10 8 6 12 12 H 1.48500 * 109.47165 * 209.99718 * 10 8 6 13 13 H 1.48497 * 109.46783 * 330.00277 * 10 8 6 14 14 C 1.34770 * 120.00277 * 180.02562 * 2 1 3 15 15 O 1.21282 * 120.00256 * 180.02562 * 14 2 1 16 16 C 1.50703 * 120.00010 * 359.97438 * 14 2 1 17 17 O 1.42902 * 109.47357 * 180.02562 * 16 14 2 18 18 C 1.35898 * 116.99694 * 180.02562 * 17 16 14 19 19 C 1.38735 * 120.05254 * 179.97438 * 18 17 16 20 20 C 1.38144 * 119.94607 * 179.97438 * 19 18 17 21 21 C 1.38266 * 120.05233 * 0.02562 * 20 19 18 22 22 C 1.38269 * 120.11595 * 359.95530 * 21 20 19 23 23 C 1.38142 * 120.04935 * 0.04230 * 22 21 20 24 24 H 1.09005 * 109.46757 * 269.99648 * 1 2 3 25 25 H 1.09003 * 109.47320 * 29.99539 * 1 2 3 26 26 H 1.09000 * 109.46980 * 149.99823 * 1 2 3 27 27 H 1.08997 * 109.47683 * 30.00837 * 3 2 1 28 28 H 1.09011 * 109.46732 * 150.00140 * 3 2 1 29 29 H 1.09001 * 109.46906 * 300.00217 * 4 3 2 30 30 H 1.08994 * 109.47020 * 60.00387 * 4 3 2 31 31 H 0.96989 * 120.00110 * 359.97438 * 5 4 3 32 32 H 0.96995 * 120.00201 * 179.97438 * 9 8 6 33 33 H 1.08999 * 109.46805 * 59.99992 * 16 14 2 34 34 H 1.08998 * 109.47364 * 300.00344 * 16 14 2 35 35 H 1.08002 * 120.02704 * 359.70561 * 19 18 17 36 36 H 1.08001 * 119.97447 * 179.97438 * 20 19 18 37 37 H 1.08000 * 119.94089 * 179.97438 * 21 20 19 38 38 H 1.07992 * 119.97577 * 180.02562 * 22 21 20 39 39 H 1.08005 * 120.02748 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 -1.4424 5 7 3.1854 2.9790 -1.4423 6 6 3.5273 3.5722 -2.6283 7 1 3.2571 3.1048 -3.5636 8 6 4.2213 4.7744 -2.6283 9 7 4.5503 5.3444 -1.4884 10 14 4.6885 5.5833 -4.2460 11 1 3.5997 6.4977 -4.6746 12 1 5.9434 6.3571 -4.0683 13 1 4.8935 4.5382 -5.2808 14 6 2.1389 -1.1671 -0.0005 15 8 3.3517 -1.1671 -0.0001 16 6 1.3855 -2.4723 -0.0005 17 8 2.3141 -3.5584 -0.0005 18 6 1.7946 -4.8142 -0.0011 19 6 2.6387 -5.9153 -0.0016 20 6 2.1082 -7.1908 -0.0016 21 6 0.7373 -7.3706 -0.0016 22 6 -0.1061 -6.2749 -0.0007 23 6 0.4195 -4.9974 -0.0006 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6085 2.0284 0.5139 28 1 3.1500 1.1384 0.5139 29 1 3.0415 0.9509 -1.9563 30 1 1.5000 1.8409 -1.9562 31 1 3.4278 3.3990 -0.6024 32 1 5.0356 6.1842 -1.4883 33 1 0.7585 -2.5298 -0.8903 34 1 0.7591 -2.5303 0.8896 35 1 3.7096 -5.7753 -0.0065 36 1 2.7649 -8.0482 -0.0025 37 1 0.3246 -8.3686 -0.0021 38 1 -1.1765 -6.4180 -0.0002 39 1 -0.2396 -4.1418 -0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714783020.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:04 Heat of formation + Delta-G solvation = -23.462454 kcal Electronic energy + Delta-G solvation = -20566.247561 eV Core-core repulsion = 17282.185900 eV Total energy + Delta-G solvation = -3284.061661 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.62526 -39.53145 -37.50315 -35.91166 -34.39510 -31.67897 -31.30729 -30.44076 -29.09852 -27.67311 -26.28756 -23.78505 -22.92092 -22.37119 -21.44608 -19.31504 -18.70708 -17.17298 -17.01329 -16.67166 -16.48758 -15.95640 -15.45210 -14.97295 -14.62267 -14.44516 -13.84054 -13.67691 -13.54345 -13.38477 -13.09516 -12.90181 -12.84736 -12.69290 -12.34769 -11.89516 -11.44229 -11.24218 -11.17459 -11.01130 -10.88704 -10.68845 -10.10545 -9.81736 -9.67160 -9.30977 -8.86816 -8.61445 -8.49205 -6.93034 -5.75374 -3.04844 1.03428 1.15587 2.39162 2.56432 3.38575 3.45166 3.49987 3.50415 3.52725 4.26194 4.50035 4.60250 4.62234 4.66608 4.74686 4.84012 4.97223 5.07713 5.18016 5.23581 5.32878 5.46592 5.53004 5.63001 5.70600 5.79219 5.98994 6.01066 6.08636 6.09633 6.23426 6.42750 6.50440 6.70359 6.87389 7.10142 7.35916 7.71159 8.15284 8.43037 9.53989 10.09605 10.44754 11.47534 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034632 B = 0.002734 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.317800 B =10239.319105 C =10542.504029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.609 5.609 3 C 0.109 3.891 4 C 0.142 3.858 5 N -0.730 5.730 6 C -0.238 4.238 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.933 5.933 10 Si 0.909 3.091 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.511 3.489 15 O -0.508 6.508 16 C 0.044 3.956 17 O -0.288 6.288 18 C 0.132 3.868 19 C -0.149 4.149 20 C -0.080 4.080 21 C -0.162 4.162 22 C -0.080 4.080 23 C -0.213 4.213 24 H 0.059 0.941 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.023 0.977 30 H 0.018 0.982 31 H 0.384 0.616 32 H 0.256 0.744 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.770 -23.366 5.971 27.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.344 5.344 3 C -0.013 4.013 4 C 0.013 3.987 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.582 5.582 10 Si 0.740 3.260 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.297 3.703 15 O -0.381 6.381 16 C -0.034 4.034 17 O -0.201 6.201 18 C 0.086 3.914 19 C -0.168 4.168 20 C -0.098 4.098 21 C -0.180 4.180 22 C -0.098 4.098 23 C -0.231 4.231 24 H 0.077 0.923 25 H 0.100 0.900 26 H 0.085 0.915 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.041 0.959 30 H 0.036 0.964 31 H 0.218 0.782 32 H 0.065 0.935 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.151 0.849 36 H 0.147 0.853 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.871 -23.261 5.800 27.210 hybrid contribution -0.086 0.736 -0.648 0.985 sum -12.958 -22.525 5.152 26.492 Atomic orbital electron populations 1.21890 0.79492 1.03675 1.01936 1.47700 1.06993 1.05938 1.73807 1.21762 0.97580 0.82581 0.99377 1.20913 0.95175 0.89522 0.93055 1.42202 1.67099 1.21573 1.06636 1.19204 1.29487 1.02331 0.85942 0.91185 1.24758 1.01215 0.98060 0.96976 1.69660 1.45006 1.19572 1.23962 0.86152 0.77676 0.79226 0.82922 1.21698 1.21690 1.20730 1.19938 0.88147 0.84504 0.77742 1.90794 1.13397 1.86702 1.47230 1.22550 0.92006 0.85354 1.03510 1.86189 1.34169 1.11450 1.88244 1.19122 0.92056 0.84484 0.95728 1.20519 1.00214 0.90256 1.05798 1.20993 0.95337 0.96131 0.97368 1.21076 0.93594 0.98893 1.04485 1.20945 0.99820 0.91833 0.97250 1.21280 0.93757 0.98826 1.09272 0.92255 0.89990 0.91466 0.90093 0.89490 0.95882 0.96373 0.78230 0.93462 0.88980 0.89092 0.84898 0.85298 0.85951 0.85771 0.85448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 10.24 59.85 0.61 1.24 16 2 N -0.61 -8.35 2.87 -181.56 -0.52 -8.87 16 3 C 0.11 1.86 5.52 -4.04 -0.02 1.84 16 4 C 0.14 3.02 6.58 -4.04 -0.03 2.99 16 5 N -0.73 -19.24 5.60 -59.91 -0.34 -19.58 16 6 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 7 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -28.77 13.06 55.49 0.72 -28.05 16 10 Si 0.91 22.89 29.55 -169.99 -5.02 17.87 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 C 0.51 7.82 7.75 -10.99 -0.09 7.73 16 15 O -0.51 -10.42 16.08 -14.35 -0.23 -10.65 16 16 C 0.04 0.49 3.77 36.01 0.14 0.62 16 17 O -0.29 -3.96 9.67 -39.33 -0.38 -4.34 16 18 C 0.13 1.50 6.69 -39.22 -0.26 1.24 16 19 C -0.15 -1.56 9.99 -39.43 -0.39 -1.96 16 20 C -0.08 -0.67 10.04 -39.61 -0.40 -1.06 16 21 C -0.16 -1.23 10.04 -39.56 -0.40 -1.63 16 22 C -0.08 -0.62 10.04 -39.61 -0.40 -1.02 16 23 C -0.21 -1.90 9.04 -39.44 -0.36 -2.26 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16 26 H 0.07 0.41 6.44 -51.93 -0.33 0.07 16 27 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 28 H 0.09 1.67 7.42 -51.92 -0.39 1.28 16 29 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.38 10.47 7.67 -40.82 -0.31 10.16 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.09 0.78 6.92 -51.93 -0.36 0.42 16 34 H 0.09 0.72 7.63 -51.93 -0.40 0.33 16 35 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 37 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 39 H 0.13 0.86 6.30 -52.48 -0.33 0.53 16 LS Contribution 334.67 15.07 5.04 5.04 Total: -1.00 -36.17 334.67 -8.02 -44.20 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -5.46 Total: 4.22 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -1.84 Total: 0.16 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: -0.13 Total: -56.50 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -0.61 Total: -14.99 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -36.17 -8.02 -44.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714783020.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.735 kcal (2) G-P(sol) polarization free energy of solvation -36.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds