Wall clock time and date at job start Tue Mar 31 2020 01:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 119.99601 * 2 1 4 4 C 1.52996 * 109.47323 * 270.00021 * 3 2 1 5 5 N 1.46506 * 109.46938 * 180.02562 * 4 3 2 6 6 C 1.36940 * 119.99544 * 180.02562 * 5 4 3 7 7 H 1.07997 * 120.00290 * 359.97438 * 6 5 4 8 8 C 1.38810 * 119.99786 * 179.97438 * 6 5 4 9 9 N 1.31622 * 120.00074 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00166 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46756 * 90.00224 * 10 8 6 12 12 H 1.48500 * 109.47165 * 209.99718 * 10 8 6 13 13 H 1.48497 * 109.46783 * 330.00277 * 10 8 6 14 14 C 1.34770 * 120.00277 * 180.02562 * 2 1 3 15 15 O 1.21282 * 120.00256 * 180.02562 * 14 2 1 16 16 C 1.50703 * 120.00010 * 359.97438 * 14 2 1 17 17 O 1.42902 * 109.47357 * 180.02562 * 16 14 2 18 18 C 1.35898 * 116.99694 * 180.02562 * 17 16 14 19 19 C 1.38735 * 120.05254 * 179.97438 * 18 17 16 20 20 C 1.38144 * 119.94607 * 179.97438 * 19 18 17 21 21 C 1.38266 * 120.05233 * 0.02562 * 20 19 18 22 22 C 1.38269 * 120.11595 * 359.95530 * 21 20 19 23 23 C 1.38142 * 120.04935 * 0.04230 * 22 21 20 24 24 H 1.09005 * 109.46757 * 269.99648 * 1 2 3 25 25 H 1.09003 * 109.47320 * 29.99539 * 1 2 3 26 26 H 1.09000 * 109.46980 * 149.99823 * 1 2 3 27 27 H 1.08997 * 109.47683 * 30.00837 * 3 2 1 28 28 H 1.09011 * 109.46732 * 150.00140 * 3 2 1 29 29 H 1.09001 * 109.46906 * 300.00217 * 4 3 2 30 30 H 1.08994 * 109.47020 * 60.00387 * 4 3 2 31 31 H 0.96989 * 120.00110 * 359.97438 * 5 4 3 32 32 H 0.96995 * 120.00201 * 179.97438 * 9 8 6 33 33 H 1.08999 * 109.46805 * 59.99992 * 16 14 2 34 34 H 1.08998 * 109.47364 * 300.00344 * 16 14 2 35 35 H 1.08002 * 120.02704 * 359.70561 * 19 18 17 36 36 H 1.08001 * 119.97447 * 179.97438 * 20 19 18 37 37 H 1.08000 * 119.94089 * 179.97438 * 21 20 19 38 38 H 1.07992 * 119.97577 * 180.02562 * 22 21 20 39 39 H 1.08005 * 120.02748 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 -1.4424 5 7 3.1854 2.9790 -1.4423 6 6 3.5273 3.5722 -2.6283 7 1 3.2571 3.1048 -3.5636 8 6 4.2213 4.7744 -2.6283 9 7 4.5503 5.3444 -1.4884 10 14 4.6885 5.5833 -4.2460 11 1 3.5997 6.4977 -4.6746 12 1 5.9434 6.3571 -4.0683 13 1 4.8935 4.5382 -5.2808 14 6 2.1389 -1.1671 -0.0005 15 8 3.3517 -1.1671 -0.0001 16 6 1.3855 -2.4723 -0.0005 17 8 2.3141 -3.5584 -0.0005 18 6 1.7946 -4.8142 -0.0011 19 6 2.6387 -5.9153 -0.0016 20 6 2.1082 -7.1908 -0.0016 21 6 0.7373 -7.3706 -0.0016 22 6 -0.1061 -6.2749 -0.0007 23 6 0.4195 -4.9974 -0.0006 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6085 2.0284 0.5139 28 1 3.1500 1.1384 0.5139 29 1 3.0415 0.9509 -1.9563 30 1 1.5000 1.8409 -1.9562 31 1 3.4278 3.3990 -0.6024 32 1 5.0356 6.1842 -1.4883 33 1 0.7585 -2.5298 -0.8903 34 1 0.7591 -2.5303 0.8896 35 1 3.7096 -5.7753 -0.0065 36 1 2.7649 -8.0482 -0.0025 37 1 0.3246 -8.3686 -0.0021 38 1 -1.1765 -6.4180 -0.0002 39 1 -0.2396 -4.1418 -0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714783020.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:03 Heat of formation + Delta-G solvation = -47.788873 kcal Electronic energy + Delta-G solvation = -20567.302433 eV Core-core repulsion = 17282.185900 eV Total energy + Delta-G solvation = -3285.116534 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.53751 -40.52698 -38.29121 -37.36333 -36.14767 -33.52150 -32.06294 -31.30512 -30.36489 -28.74977 -27.44391 -25.57580 -23.75673 -23.37750 -22.80008 -20.47373 -19.51178 -19.17819 -18.03325 -17.65232 -17.42020 -16.85497 -16.67286 -16.21548 -15.99789 -15.42073 -15.18779 -15.09880 -15.05343 -14.43366 -14.30203 -14.04414 -13.67508 -13.52548 -13.22966 -13.10241 -12.88906 -12.75233 -12.46479 -12.37430 -12.15885 -12.08607 -11.90309 -11.82197 -11.00905 -10.94891 -9.93627 -9.80060 -9.19549 -9.09569 -8.00193 -5.31342 0.41076 0.49106 1.38816 1.44736 1.46530 1.47791 1.56538 2.45295 2.56990 2.86212 3.32179 3.34357 3.82493 3.97833 4.00625 4.03135 4.05593 4.10133 4.19809 4.31495 4.33810 4.48497 4.53191 4.55230 4.71297 4.72873 4.93518 4.96523 5.05170 5.10800 5.35155 5.38073 5.46199 5.49384 5.62258 5.84947 6.21132 6.23011 6.42817 7.02001 7.27413 7.98665 8.24088 9.23164 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034632 B = 0.002734 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.317800 B =10239.319105 C =10542.504029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.604 5.604 3 C 0.122 3.878 4 C 0.148 3.852 5 N -0.743 5.743 6 C -0.252 4.252 7 H 0.073 0.927 8 C -0.074 4.074 9 N -0.968 5.968 10 Si 0.979 3.021 11 H -0.279 1.279 12 H -0.293 1.293 13 H -0.273 1.273 14 C 0.502 3.498 15 O -0.577 6.577 16 C 0.052 3.948 17 O -0.327 6.327 18 C 0.103 3.897 19 C -0.177 4.177 20 C -0.084 4.084 21 C -0.162 4.162 22 C -0.082 4.082 23 C -0.213 4.213 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.100 0.900 27 H 0.103 0.897 28 H 0.057 0.943 29 H -0.004 1.004 30 H 0.035 0.965 31 H 0.376 0.624 32 H 0.254 0.746 33 H 0.123 0.877 34 H 0.129 0.871 35 H 0.120 0.880 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.155 0.845 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.941 -24.813 5.503 30.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.338 5.338 3 C -0.001 4.001 4 C 0.020 3.980 5 N -0.387 5.387 6 C -0.384 4.384 7 H 0.091 0.909 8 C -0.266 4.266 9 N -0.618 5.618 10 Si 0.807 3.193 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.198 1.198 14 C 0.290 3.710 15 O -0.455 6.455 16 C -0.026 4.026 17 O -0.241 6.241 18 C 0.058 3.942 19 C -0.196 4.196 20 C -0.102 4.102 21 C -0.180 4.180 22 C -0.100 4.100 23 C -0.232 4.232 24 H 0.105 0.895 25 H 0.101 0.899 26 H 0.118 0.882 27 H 0.122 0.878 28 H 0.076 0.924 29 H 0.014 0.986 30 H 0.053 0.947 31 H 0.208 0.792 32 H 0.063 0.937 33 H 0.141 0.859 34 H 0.146 0.854 35 H 0.138 0.862 36 H 0.166 0.834 37 H 0.167 0.833 38 H 0.172 0.828 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -16.125 -24.745 5.326 30.011 hybrid contribution 0.835 1.077 -0.486 1.446 sum -15.290 -23.668 4.840 28.590 Atomic orbital electron populations 1.22306 0.75724 1.05443 1.04333 1.47780 1.09112 1.04224 1.72636 1.21384 0.97488 0.84937 0.96336 1.20965 0.94461 0.86753 0.95818 1.42394 1.67667 1.22999 1.05641 1.19587 1.29255 1.02612 0.86926 0.90903 1.25651 1.01563 0.98846 1.00569 1.69816 1.45922 1.19902 1.26134 0.85066 0.77189 0.78200 0.78828 1.20594 1.21927 1.19769 1.20869 0.87691 0.86285 0.76171 1.90759 1.16533 1.87771 1.50462 1.22650 0.91090 0.82271 1.06567 1.86128 1.36081 1.12784 1.89084 1.19390 0.93487 0.83576 0.97716 1.20697 0.99953 0.91501 1.07420 1.21273 0.96433 0.95740 0.96769 1.21483 0.93175 1.00386 1.02990 1.21374 1.01443 0.91238 0.95906 1.21577 0.92743 1.00445 1.08423 0.89512 0.89850 0.88164 0.87848 0.92428 0.98611 0.94681 0.79203 0.93730 0.85915 0.85397 0.86233 0.83381 0.83325 0.82761 0.82967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.85 10.24 127.77 1.31 2.16 16 2 N -0.60 -15.86 2.87 -846.74 -2.43 -18.30 16 3 C 0.12 4.21 5.52 86.38 0.48 4.69 16 4 C 0.15 6.38 6.58 86.38 0.57 6.95 16 5 N -0.74 -40.06 5.60 -343.45 -1.92 -41.99 16 6 C -0.25 -14.78 9.99 84.03 0.84 -13.94 16 7 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 8 C -0.07 -4.38 5.50 84.86 0.47 -3.91 16 9 N -0.97 -60.62 13.06 21.65 0.28 -60.33 16 10 Si 0.98 47.27 29.55 68.60 2.03 49.30 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 12 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 13 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 14 C 0.50 15.34 7.75 87.66 0.68 16.02 16 15 O -0.58 -25.09 16.08 16.00 0.26 -24.83 16 16 C 0.05 1.04 3.77 71.24 0.27 1.31 16 17 O -0.33 -9.07 9.67 -73.37 -0.71 -9.78 16 18 C 0.10 2.30 6.69 22.51 0.15 2.45 16 19 C -0.18 -3.80 9.99 22.37 0.22 -3.58 16 20 C -0.08 -1.30 10.04 22.25 0.22 -1.08 16 21 C -0.16 -2.01 10.04 22.28 0.22 -1.78 16 22 C -0.08 -0.98 10.04 22.25 0.22 -0.75 16 23 C -0.21 -3.23 9.04 22.36 0.20 -3.03 16 24 H 0.09 0.77 8.14 -2.38 -0.02 0.76 16 25 H 0.08 1.16 8.07 -2.39 -0.02 1.14 16 26 H 0.10 0.73 6.44 -2.39 -0.02 0.71 16 27 H 0.10 3.09 8.07 -2.39 -0.02 3.07 16 28 H 0.06 2.33 7.42 -2.38 -0.02 2.32 16 29 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 30 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.38 21.15 7.67 -92.72 -0.71 20.43 16 32 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 33 H 0.12 1.66 6.92 -2.39 -0.02 1.64 16 34 H 0.13 1.57 7.63 -2.39 -0.02 1.55 16 35 H 0.12 2.70 8.06 -2.91 -0.02 2.68 16 36 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 37 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 38 H 0.15 0.88 8.06 -2.91 -0.02 0.86 16 39 H 0.15 1.38 6.30 -2.91 -0.02 1.36 16 Total: -1.00 -82.91 334.67 3.70 -79.21 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.34 Total: 21.22 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 5.86 Total: 5.49 kcal Atomic # 7 Polarization: -116.54 SS G_CDS: -4.07 Total: -120.62 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -0.45 Total: -34.61 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -82.91 3.70 -79.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714783020.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.426 kcal (2) G-P(sol) polarization free energy of solvation -82.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds