Wall clock time and date at job start Tue Mar 31 2020 01:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 120.00175 * 2 1 4 4 C 1.53001 * 109.47036 * 269.72735 * 3 2 1 5 5 C 1.52998 * 109.47036 * 179.97438 * 4 3 2 6 6 N 1.46504 * 109.46870 * 179.97438 * 5 4 3 7 7 C 1.36939 * 119.99962 * 179.97438 * 6 5 4 8 8 H 1.08009 * 119.99803 * 0.02562 * 7 6 5 9 9 C 1.38809 * 120.00142 * 179.97438 * 7 6 5 10 10 N 1.31626 * 120.00010 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99936 * 0.02562 * 9 7 6 12 12 H 1.48492 * 109.47037 * 89.99895 * 11 9 7 13 13 H 1.48506 * 109.46956 * 209.99813 * 11 9 7 14 14 H 1.48499 * 109.46831 * 329.99339 * 11 9 7 15 15 C 1.34775 * 119.99973 * 179.72458 * 2 1 3 16 16 O 1.21782 * 120.00136 * 180.27724 * 15 2 1 17 17 C 1.41548 * 120.00063 * 0.27082 * 15 2 1 18 18 C 1.35630 * 120.00199 * 173.54356 * 17 15 2 19 19 C 1.41611 * 119.99879 * 350.03911 * 18 17 15 20 20 C 1.37950 * 126.10713 * 139.64846 * 19 18 17 21 21 C 1.40305 * 106.53322 * 179.97438 * 20 19 18 22 22 C 1.35161 * 107.20259 * 0.02562 * 21 20 19 23 23 O 1.34017 * 109.03811 * 359.76488 * 22 21 20 24 24 H 1.09000 * 109.47357 * 90.00417 * 1 2 3 25 25 H 1.09001 * 109.47116 * 209.99736 * 1 2 3 26 26 H 1.08997 * 109.47135 * 329.99902 * 1 2 3 27 27 H 1.09002 * 109.46799 * 29.72127 * 3 2 1 28 28 H 1.08993 * 109.47436 * 149.72253 * 3 2 1 29 29 H 1.09002 * 109.46830 * 299.99372 * 4 3 2 30 30 H 1.08993 * 109.47402 * 59.99496 * 4 3 2 31 31 H 1.09004 * 109.47357 * 299.99211 * 5 4 3 32 32 H 1.09001 * 109.47230 * 59.99872 * 5 4 3 33 33 H 0.96993 * 120.00613 * 0.02562 * 6 5 4 34 34 H 0.97003 * 119.99797 * 180.02562 * 10 9 7 35 35 H 1.07995 * 120.00302 * 353.55102 * 17 15 2 36 36 H 1.08002 * 120.00520 * 170.04084 * 18 17 15 37 37 H 1.08004 * 126.73098 * 359.97438 * 20 19 18 38 38 H 1.07999 * 126.40207 * 179.97438 * 21 20 19 39 39 H 1.07999 * 125.48137 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4585 1.7069 -1.4425 5 6 3.2229 3.0322 -1.4425 6 7 3.4733 3.4515 -2.8238 7 6 4.1467 4.6173 -3.0740 8 1 4.4936 5.2275 -2.2531 9 6 4.3844 5.0143 -4.3827 10 7 5.0322 6.1346 -4.6233 11 14 3.7851 3.9586 -5.8025 12 1 2.4135 4.3783 -6.1868 13 1 4.6971 4.1252 -6.9626 14 1 3.7685 2.5331 -5.3867 15 6 2.1388 -1.1672 0.0056 16 8 3.3567 -1.1672 0.0107 17 6 1.4311 -2.3930 0.0057 18 6 2.1033 -3.5642 -0.1208 19 6 3.4775 -3.5585 -0.4628 20 6 4.4507 -4.3798 0.0677 21 6 5.6557 -4.0271 -0.5586 22 6 5.3781 -3.0281 -1.4257 23 8 4.0679 -2.7519 -1.3695 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5138 27 1 1.6062 2.0296 0.5095 28 1 3.1477 1.1396 0.5181 29 1 3.0497 0.9460 -1.9520 30 1 1.5083 1.8360 -1.9606 31 1 2.6313 3.7930 -0.9332 32 1 4.1732 2.9035 -0.9243 33 1 3.1615 2.9038 -3.5610 34 1 5.1979 6.4122 -5.5378 35 1 0.3559 -2.3958 0.1064 36 1 1.5906 -4.5012 0.0394 37 1 4.3122 -5.1442 0.8180 38 1 6.6242 -4.4704 -0.3805 39 1 6.0958 -2.5349 -2.0644 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716524854.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:44 Heat of formation + Delta-G solvation = 27.736737 kcal Electronic energy + Delta-G solvation = -21249.747674 eV Core-core repulsion = 17967.906176 eV Total energy + Delta-G solvation = -3281.841497 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.41249 -40.04762 -36.37355 -34.94107 -34.24575 -32.86249 -32.21374 -30.40043 -28.81471 -27.03934 -25.86126 -23.71865 -22.15240 -21.66457 -21.04089 -20.55024 -18.84693 -17.93055 -17.49492 -16.87807 -15.93459 -15.86413 -15.30576 -14.73038 -14.52981 -14.28084 -14.02761 -13.60931 -13.27212 -13.13046 -12.86327 -12.84392 -12.72116 -12.51697 -12.23245 -12.11703 -11.88167 -11.15026 -10.89020 -10.77087 -10.44223 -10.23794 -10.10408 -9.89874 -9.76495 -9.55252 -8.84778 -8.65789 -8.02720 -7.18036 -5.72751 -3.07682 0.42170 2.07494 2.63751 3.03843 3.15861 3.39073 3.40826 3.44779 3.47993 4.52722 4.58248 4.63406 4.85946 4.96791 5.03908 5.11720 5.14117 5.19683 5.34260 5.50623 5.53451 5.58143 5.62645 5.67386 5.83966 5.87704 5.90752 5.98665 6.09299 6.17369 6.32287 6.48291 6.55959 6.81233 6.83804 7.19071 7.35723 8.04101 8.20206 8.46713 9.26016 9.98718 10.19229 11.45860 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017879 B = 0.004115 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.737335 B = 6802.510108 C = 7727.649128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.614 5.614 3 C 0.121 3.879 4 C -0.141 4.141 5 C 0.161 3.839 6 N -0.757 5.757 7 C -0.243 4.243 8 H 0.090 0.910 9 C 0.003 3.997 10 N -0.936 5.936 11 Si 0.884 3.116 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.277 1.277 15 C 0.536 3.464 16 O -0.520 6.520 17 C -0.209 4.209 18 C 0.005 3.995 19 C 0.003 3.997 20 C -0.181 4.181 21 C -0.229 4.229 22 C -0.009 4.009 23 O -0.133 6.133 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.026 0.974 32 H 0.028 0.972 33 H 0.360 0.640 34 H 0.259 0.741 35 H 0.139 0.861 36 H 0.154 0.846 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.771 -23.284 11.779 27.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.347 5.347 3 C -0.002 4.002 4 C -0.180 4.180 5 C 0.033 3.967 6 N -0.402 5.402 7 C -0.373 4.373 8 H 0.108 0.892 9 C -0.192 4.192 10 N -0.584 5.584 11 Si 0.715 3.285 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.204 1.204 15 C 0.327 3.673 16 O -0.398 6.398 17 C -0.229 4.229 18 C -0.015 4.015 19 C -0.047 4.047 20 C -0.201 4.201 21 C -0.248 4.248 22 C -0.080 4.080 23 O -0.026 6.026 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.193 0.807 34 H 0.069 0.931 35 H 0.157 0.843 36 H 0.171 0.829 37 H 0.164 0.836 38 H 0.164 0.836 39 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -9.177 -22.814 11.663 27.216 hybrid contribution -0.363 -0.651 -1.021 1.264 sum -9.540 -23.465 10.642 27.475 Atomic orbital electron populations 1.21851 0.79756 1.02985 1.02041 1.47811 1.06827 1.06481 1.73570 1.21444 0.97621 0.83486 0.97624 1.22087 1.00868 0.98850 0.96240 1.20519 0.96578 0.92011 0.87587 1.42711 1.69678 1.26182 1.01658 1.19094 1.27711 0.96823 0.93628 0.89191 1.24666 1.00493 0.97213 0.96873 1.69710 1.46159 1.23114 1.19418 0.86534 0.78400 0.80398 0.83181 1.21087 1.21680 1.20357 1.17135 0.87820 0.84481 0.77852 1.90891 1.13247 1.86980 1.48719 1.22414 1.01051 0.92941 1.06534 1.20640 0.89283 0.98560 0.93000 1.19557 0.93901 0.93808 0.97425 1.22108 0.92420 1.02199 1.03331 1.21615 0.99605 1.01969 1.01633 1.24232 0.82997 0.98693 1.02038 1.84277 1.20682 1.49008 1.48664 0.92488 0.91063 0.90843 0.90523 0.89719 0.91635 0.92172 0.95566 0.95449 0.80726 0.93102 0.84324 0.82891 0.83559 0.83627 0.78409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.61 10.21 59.85 0.61 1.22 16 2 N -0.61 -7.51 2.87 -185.04 -0.53 -8.04 16 3 C 0.12 1.68 5.45 -4.04 -0.02 1.65 16 4 C -0.14 -2.38 5.65 -26.73 -0.15 -2.53 16 5 C 0.16 3.31 6.26 -4.04 -0.03 3.28 16 6 N -0.76 -19.21 5.41 -59.90 -0.32 -19.54 16 7 C -0.24 -7.20 10.47 -15.06 -0.16 -7.36 16 8 H 0.09 2.83 8.06 -52.48 -0.42 2.41 16 9 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 10 N -0.94 -30.22 13.97 55.49 0.78 -29.45 16 11 Si 0.88 22.94 27.74 -169.99 -4.71 18.23 16 12 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 14 H -0.28 -6.89 6.52 56.52 0.37 -6.52 16 15 C 0.54 7.39 7.23 -15.00 -0.11 7.28 16 16 O -0.52 -9.16 12.11 -19.53 -0.24 -9.39 16 17 C -0.21 -2.06 9.15 -39.25 -0.36 -2.42 16 18 C 0.00 0.05 9.95 -39.23 -0.39 -0.34 16 19 C 0.00 0.04 5.26 -38.40 -0.20 -0.16 16 20 C -0.18 -2.06 10.90 -38.91 -0.42 -2.49 16 21 C -0.23 -2.65 10.87 -39.90 -0.43 -3.09 16 22 C -0.01 -0.12 12.06 29.64 0.36 0.24 16 23 O -0.13 -2.04 7.96 -19.97 -0.16 -2.20 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.39 6.00 -51.93 -0.31 0.08 16 26 H 0.07 0.50 7.89 -51.93 -0.41 0.09 16 27 H 0.08 0.89 7.89 -51.93 -0.41 0.48 16 28 H 0.08 1.30 7.42 -51.93 -0.39 0.92 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.36 8.96 5.53 -40.82 -0.23 8.74 16 34 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 35 H 0.14 0.86 6.03 -52.49 -0.32 0.54 16 36 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.15 1.25 8.06 -52.48 -0.42 0.82 16 38 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.20 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 329.82 15.07 4.97 4.97 Total: -1.00 -37.37 329.82 -7.08 -44.44 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -5.46 Total: 5.69 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -1.40 Total: -4.72 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.08 Total: -57.03 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: -0.40 Total: -11.59 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.71 Total: 18.23 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -37.37 -7.08 -44.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716524854.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.178 kcal (2) G-P(sol) polarization free energy of solvation -37.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds