Wall clock time and date at job start Tue Mar 31 2020 01:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46505 * 119.99868 * 2 1 4 4 C 1.52996 * 109.46665 * 263.53377 * 3 2 1 5 5 N 1.46505 * 109.47002 * 179.97438 * 4 3 2 6 6 C 1.36938 * 120.00000 * 180.02562 * 5 4 3 7 7 H 1.08000 * 119.99941 * 0.02562 * 6 5 4 8 8 C 1.38813 * 119.99862 * 180.02562 * 6 5 4 9 9 N 1.31617 * 120.00120 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 119.99962 * 359.97438 * 8 6 5 11 11 H 1.48495 * 109.47070 * 90.00414 * 10 8 6 12 12 H 1.48503 * 109.46969 * 210.00157 * 10 8 6 13 13 H 1.48506 * 109.47081 * 330.00110 * 10 8 6 14 14 C 1.34772 * 120.00245 * 179.97438 * 2 1 3 15 15 O 1.21699 * 119.99938 * 4.33021 * 14 2 1 16 16 C 1.46657 * 119.99988 * 184.32058 * 14 2 1 17 17 O 1.34937 * 126.00704 * 353.57660 * 16 14 2 18 18 C 1.33952 * 109.37381 * 179.85774 * 17 16 14 19 19 C 1.35139 * 108.75764 * 0.40504 * 18 17 16 20 20 C 1.36472 * 126.00603 * 173.87928 * 16 14 2 21 21 C 1.51079 * 143.67099 * 359.97438 * 20 16 14 22 22 C 1.54373 * 105.24262 * 197.15647 * 21 20 16 23 23 C 1.51142 * 143.44433 * 179.75006 * 19 18 17 24 24 H 1.08990 * 109.46979 * 95.06164 * 1 2 3 25 25 H 1.09005 * 109.46538 * 215.05932 * 1 2 3 26 26 H 1.08995 * 109.47109 * 335.05932 * 1 2 3 27 27 H 1.09003 * 109.46775 * 23.53111 * 3 2 1 28 28 H 1.08995 * 109.47259 * 143.53319 * 3 2 1 29 29 H 1.08994 * 109.47661 * 299.99858 * 4 3 2 30 30 H 1.09003 * 109.47623 * 59.99979 * 4 3 2 31 31 H 0.97000 * 119.99603 * 359.97438 * 5 4 3 32 32 H 0.96993 * 120.00520 * 179.97438 * 9 8 6 33 33 H 1.08004 * 125.61549 * 180.19528 * 18 17 16 34 34 H 1.09003 * 110.28853 * 316.09743 * 21 20 16 35 35 H 1.08998 * 110.29459 * 78.11199 * 21 20 16 36 36 H 1.08994 * 110.76078 * 91.85307 * 22 21 20 37 37 H 1.09004 * 110.75921 * 215.05107 * 22 21 20 38 38 H 1.08999 * 110.29094 * 43.89193 * 23 19 18 39 39 H 1.09001 * 110.28904 * 281.77852 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.5932 1.6291 -1.4333 5 7 3.3251 2.8982 -1.4335 6 6 3.7825 3.4247 -2.6120 7 1 3.6033 2.9045 -3.5413 8 6 4.4765 4.6269 -2.6120 9 7 4.9166 5.1327 -3.7446 10 14 4.7858 5.5268 -1.0046 11 1 6.0726 5.0699 -0.4211 12 1 4.8494 6.9884 -1.2599 13 1 3.6813 5.2378 -0.0550 14 6 2.1389 -1.1671 0.0005 15 8 1.5331 -2.2196 -0.0786 16 6 3.6024 -1.1688 0.0962 17 8 4.4006 -0.0812 0.0666 18 6 5.6788 -0.4648 0.1820 19 6 5.7211 -1.8121 0.2791 20 6 4.3967 -2.2711 0.2251 21 6 4.3796 -3.7781 0.3296 22 6 5.7666 -4.1620 0.8880 23 6 6.6570 -2.9902 0.4223 24 1 -0.3633 -0.0907 -1.0236 25 1 -0.3632 -0.8413 0.5904 26 1 -0.3633 0.9318 0.4333 27 1 1.5631 2.0545 0.4103 28 1 3.0949 1.1703 0.6108 29 1 3.2274 0.8435 -1.8437 30 1 1.6958 1.7277 -2.0442 31 1 3.4851 3.3659 -0.5989 32 1 5.4012 5.9729 -3.7448 33 1 6.5347 0.1938 0.1921 34 1 3.5944 -4.1007 1.0135 35 1 4.2298 -4.2237 -0.6538 36 1 5.7426 -4.2200 1.9761 37 1 6.1082 -5.1045 0.4598 38 1 7.4218 -2.7768 1.1691 39 1 7.1191 -3.2246 -0.5367 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731936237.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:38 Heat of formation + Delta-G solvation = 9.823904 kcal Electronic energy + Delta-G solvation = -21998.351016 eV Core-core repulsion = 18715.732760 eV Total energy + Delta-G solvation = -3282.618256 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.82817 -39.50868 -37.42144 -36.20726 -34.33517 -31.50471 -30.68328 -30.57045 -28.70642 -27.71120 -26.10979 -23.86602 -22.82597 -21.63782 -21.26530 -20.26226 -18.98304 -17.75449 -16.83315 -16.60221 -16.30421 -15.73488 -15.35990 -14.93634 -14.50677 -14.29203 -13.83540 -13.74706 -13.45215 -13.08903 -12.88107 -12.73963 -12.67822 -12.22646 -11.79423 -11.63209 -11.60636 -11.40974 -11.28856 -11.18560 -11.03902 -10.78525 -10.21540 -10.17039 -9.62961 -9.26148 -8.93459 -8.74348 -8.38632 -7.27588 -5.79051 -3.15464 1.15845 2.34677 2.71712 3.19676 3.22340 3.33753 3.36014 3.42582 4.00274 4.50319 4.55960 4.70038 4.87473 5.00368 5.09388 5.15273 5.30503 5.40064 5.47495 5.52287 5.58496 5.59845 5.62076 5.70578 5.73221 5.79238 5.84859 5.86480 6.03153 6.05076 6.17367 6.34191 6.40129 6.64640 6.70701 6.96740 7.33773 7.96214 8.08071 8.38978 9.17437 9.89236 10.08787 11.39339 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017406 B = 0.005479 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.296425 B = 5108.805190 C = 6243.105163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.603 5.603 3 C 0.091 3.909 4 C 0.148 3.852 5 N -0.750 5.750 6 C -0.242 4.242 7 H 0.089 0.911 8 C 0.005 3.995 9 N -0.934 5.934 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.277 1.277 14 C 0.604 3.396 15 O -0.528 6.528 16 C -0.065 4.065 17 O -0.134 6.134 18 C 0.020 3.980 19 C -0.227 4.227 20 C -0.109 4.109 21 C -0.052 4.052 22 C -0.118 4.118 23 C -0.045 4.045 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.030 0.970 30 H 0.028 0.972 31 H 0.361 0.639 32 H 0.260 0.740 33 H 0.208 0.792 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.842 -15.600 12.418 19.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.335 5.335 3 C -0.032 4.032 4 C 0.020 3.980 5 N -0.397 5.397 6 C -0.372 4.372 7 H 0.107 0.893 8 C -0.190 4.190 9 N -0.582 5.582 10 Si 0.715 3.285 11 H -0.210 1.210 12 H -0.217 1.217 13 H -0.203 1.203 14 C 0.393 3.607 15 O -0.407 6.407 16 C -0.117 4.117 17 O -0.029 6.029 18 C -0.050 4.050 19 C -0.229 4.229 20 C -0.112 4.112 21 C -0.089 4.089 22 C -0.156 4.156 23 C -0.082 4.082 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.102 0.898 28 H 0.109 0.891 29 H 0.048 0.952 30 H 0.046 0.954 31 H 0.193 0.807 32 H 0.070 0.930 33 H 0.225 0.775 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.283 -15.823 12.099 19.960 hybrid contribution 0.464 0.990 0.905 1.419 sum -0.819 -14.833 13.004 19.743 Atomic orbital electron populations 1.21695 0.78316 1.02849 1.02440 1.47668 1.07350 1.06127 1.72374 1.22167 0.97130 0.84008 0.99854 1.20922 0.95206 0.89066 0.92820 1.42510 1.67920 1.22695 1.06535 1.19022 1.28345 1.03430 0.86386 0.89293 1.24657 1.00360 0.97632 0.96377 1.69697 1.42935 1.21194 1.24345 0.86548 0.78072 0.79576 0.84308 1.21046 1.21710 1.20344 1.16631 0.83509 0.83786 0.76770 1.90826 1.67442 1.31056 1.51386 1.20968 0.90870 0.84774 1.15091 1.84572 1.15883 1.32582 1.69883 1.23558 0.85515 0.94485 1.01436 1.21245 0.96876 0.94217 1.10519 1.21134 0.92956 0.96492 1.00659 1.20515 0.97772 0.88450 1.02123 1.22372 0.94196 0.97963 1.01036 1.20399 0.96003 0.90106 1.01688 0.92229 0.90863 0.90671 0.89814 0.89081 0.95170 0.95446 0.80677 0.93020 0.77526 0.90355 0.89833 0.91005 0.90343 0.90927 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.08 10.39 59.85 0.62 1.70 16 2 N -0.60 -9.10 2.89 -183.13 -0.53 -9.63 16 3 C 0.09 1.43 5.14 -4.04 -0.02 1.41 16 4 C 0.15 2.93 6.10 -4.04 -0.02 2.91 16 5 N -0.75 -17.59 5.41 -59.91 -0.32 -17.92 16 6 C -0.24 -6.83 10.47 -15.06 -0.16 -6.99 16 7 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 8 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 9 N -0.93 -29.16 13.97 55.49 0.78 -28.38 16 10 Si 0.88 21.59 27.74 -169.99 -4.71 16.88 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.28 -6.30 6.52 56.52 0.37 -5.93 16 14 C 0.60 10.15 7.58 -12.86 -0.10 10.05 16 15 O -0.53 -9.69 16.58 5.19 0.09 -9.60 16 16 C -0.07 -1.07 6.58 -36.82 -0.24 -1.31 16 17 O -0.13 -2.16 6.15 4.87 0.03 -2.13 16 18 C 0.02 0.27 12.08 29.63 0.36 0.63 16 19 C -0.23 -2.98 6.93 -104.74 -0.73 -3.70 16 20 C -0.11 -1.60 6.66 -104.31 -0.69 -2.30 16 21 C -0.05 -0.61 6.76 -26.98 -0.18 -0.79 16 22 C -0.12 -1.05 7.06 -25.30 -0.18 -1.23 16 23 C -0.04 -0.44 6.76 -26.95 -0.18 -0.62 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.85 7.64 -51.93 -0.40 0.45 16 26 H 0.07 0.74 7.78 -51.93 -0.40 0.33 16 27 H 0.08 1.17 7.78 -51.93 -0.40 0.77 16 28 H 0.09 1.44 5.36 -51.93 -0.28 1.16 16 29 H 0.03 0.65 7.12 -51.93 -0.37 0.28 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.36 8.08 5.53 -40.82 -0.23 7.86 16 32 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 33 H 0.21 2.22 8.06 -52.48 -0.42 1.80 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 322.24 15.07 4.86 4.86 Total: -1.00 -33.81 322.24 -6.92 -40.72 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -5.48 Total: 5.37 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -1.62 Total: -0.17 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: -0.08 Total: -55.92 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.12 Total: -11.73 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.71 Total: 16.88 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.81 -6.92 -40.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731936237.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.548 kcal (2) G-P(sol) polarization free energy of solvation -33.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds