Wall clock time and date at job start Tue Mar 31 2020 01:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46505 * 119.99868 * 2 1 4 4 C 1.52996 * 109.46665 * 263.53377 * 3 2 1 5 5 N 1.46505 * 109.47002 * 179.97438 * 4 3 2 6 6 C 1.36938 * 120.00000 * 180.02562 * 5 4 3 7 7 H 1.08000 * 119.99941 * 0.02562 * 6 5 4 8 8 C 1.38813 * 119.99862 * 180.02562 * 6 5 4 9 9 N 1.31617 * 120.00120 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 119.99962 * 359.97438 * 8 6 5 11 11 H 1.48495 * 109.47070 * 90.00414 * 10 8 6 12 12 H 1.48503 * 109.46969 * 210.00157 * 10 8 6 13 13 H 1.48506 * 109.47081 * 330.00110 * 10 8 6 14 14 C 1.34772 * 120.00245 * 179.97438 * 2 1 3 15 15 O 1.21699 * 119.99938 * 4.33021 * 14 2 1 16 16 C 1.46657 * 119.99988 * 184.32058 * 14 2 1 17 17 O 1.34937 * 126.00704 * 353.57660 * 16 14 2 18 18 C 1.33952 * 109.37381 * 179.85774 * 17 16 14 19 19 C 1.35139 * 108.75764 * 0.40504 * 18 17 16 20 20 C 1.36472 * 126.00603 * 173.87928 * 16 14 2 21 21 C 1.51079 * 143.67099 * 359.97438 * 20 16 14 22 22 C 1.54373 * 105.24262 * 197.15647 * 21 20 16 23 23 C 1.51142 * 143.44433 * 179.75006 * 19 18 17 24 24 H 1.08990 * 109.46979 * 95.06164 * 1 2 3 25 25 H 1.09005 * 109.46538 * 215.05932 * 1 2 3 26 26 H 1.08995 * 109.47109 * 335.05932 * 1 2 3 27 27 H 1.09003 * 109.46775 * 23.53111 * 3 2 1 28 28 H 1.08995 * 109.47259 * 143.53319 * 3 2 1 29 29 H 1.08994 * 109.47661 * 299.99858 * 4 3 2 30 30 H 1.09003 * 109.47623 * 59.99979 * 4 3 2 31 31 H 0.97000 * 119.99603 * 359.97438 * 5 4 3 32 32 H 0.96993 * 120.00520 * 179.97438 * 9 8 6 33 33 H 1.08004 * 125.61549 * 180.19528 * 18 17 16 34 34 H 1.09003 * 110.28853 * 316.09743 * 21 20 16 35 35 H 1.08998 * 110.29459 * 78.11199 * 21 20 16 36 36 H 1.08994 * 110.76078 * 91.85307 * 22 21 20 37 37 H 1.09004 * 110.75921 * 215.05107 * 22 21 20 38 38 H 1.08999 * 110.29094 * 43.89193 * 23 19 18 39 39 H 1.09001 * 110.28904 * 281.77852 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.5932 1.6291 -1.4333 5 7 3.3251 2.8982 -1.4335 6 6 3.7825 3.4247 -2.6120 7 1 3.6033 2.9045 -3.5413 8 6 4.4765 4.6269 -2.6120 9 7 4.9166 5.1327 -3.7446 10 14 4.7858 5.5268 -1.0046 11 1 6.0726 5.0699 -0.4211 12 1 4.8494 6.9884 -1.2599 13 1 3.6813 5.2378 -0.0550 14 6 2.1389 -1.1671 0.0005 15 8 1.5331 -2.2196 -0.0786 16 6 3.6024 -1.1688 0.0962 17 8 4.4006 -0.0812 0.0666 18 6 5.6788 -0.4648 0.1820 19 6 5.7211 -1.8121 0.2791 20 6 4.3967 -2.2711 0.2251 21 6 4.3796 -3.7781 0.3296 22 6 5.7666 -4.1620 0.8880 23 6 6.6570 -2.9902 0.4223 24 1 -0.3633 -0.0907 -1.0236 25 1 -0.3632 -0.8413 0.5904 26 1 -0.3633 0.9318 0.4333 27 1 1.5631 2.0545 0.4103 28 1 3.0949 1.1703 0.6108 29 1 3.2274 0.8435 -1.8437 30 1 1.6958 1.7277 -2.0442 31 1 3.4851 3.3659 -0.5989 32 1 5.4012 5.9729 -3.7448 33 1 6.5347 0.1938 0.1921 34 1 3.5944 -4.1007 1.0135 35 1 4.2298 -4.2237 -0.6538 36 1 5.7426 -4.2200 1.9761 37 1 6.1082 -5.1045 0.4598 38 1 7.4218 -2.7768 1.1691 39 1 7.1191 -3.2246 -0.5367 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731936237.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:37 Heat of formation + Delta-G solvation = -12.505624 kcal Electronic energy + Delta-G solvation = -21999.319297 eV Core-core repulsion = 18715.732760 eV Total energy + Delta-G solvation = -3283.586537 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.91264 -40.75473 -38.41208 -37.62354 -36.06699 -33.55028 -31.72076 -31.57643 -30.20670 -28.81599 -27.17164 -25.58720 -23.91513 -23.28021 -22.38428 -21.32500 -20.27247 -19.57809 -18.07817 -17.75466 -17.50441 -16.89241 -16.61008 -16.35825 -15.89883 -15.52728 -15.48043 -15.10049 -14.77783 -14.59426 -14.05877 -13.94315 -13.66491 -13.48226 -13.21743 -12.99661 -12.81506 -12.64528 -12.61243 -12.35812 -12.09897 -12.07293 -11.99042 -11.82124 -11.45692 -10.99232 -10.28449 -9.95553 -9.50506 -9.34406 -8.02652 -5.38705 -0.00983 1.30444 1.40165 1.44715 1.52164 1.59393 1.99531 2.05853 2.49712 3.05800 3.28380 3.36610 3.79469 3.82940 3.94826 4.10322 4.13293 4.15951 4.21118 4.37267 4.42766 4.59322 4.60775 4.79028 4.82003 4.85148 4.88641 4.92285 5.02864 5.04996 5.12669 5.23615 5.33254 5.35491 5.46892 5.72303 5.84391 6.11684 6.20053 6.84125 7.05890 7.77501 8.01348 9.18908 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017406 B = 0.005479 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.296425 B = 5108.805190 C = 6243.105163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.602 5.602 3 C 0.105 3.895 4 C 0.153 3.847 5 N -0.746 5.746 6 C -0.239 4.239 7 H 0.047 0.953 8 C -0.060 4.060 9 N -0.985 5.985 10 Si 0.959 3.041 11 H -0.273 1.273 12 H -0.297 1.297 13 H -0.245 1.245 14 C 0.598 3.402 15 O -0.553 6.553 16 C -0.100 4.100 17 O -0.151 6.151 18 C 0.009 3.991 19 C -0.229 4.229 20 C -0.121 4.121 21 C -0.057 4.057 22 C -0.108 4.108 23 C -0.045 4.045 24 H 0.057 0.943 25 H 0.076 0.924 26 H 0.104 0.896 27 H 0.111 0.889 28 H 0.095 0.905 29 H 0.010 0.990 30 H 0.020 0.980 31 H 0.370 0.630 32 H 0.259 0.741 33 H 0.233 0.767 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.291 -15.942 15.042 21.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.332 5.332 3 C -0.018 4.018 4 C 0.025 3.975 5 N -0.393 5.393 6 C -0.369 4.369 7 H 0.065 0.935 8 C -0.251 4.251 9 N -0.635 5.635 10 Si 0.785 3.215 11 H -0.199 1.199 12 H -0.224 1.224 13 H -0.169 1.169 14 C 0.388 3.612 15 O -0.435 6.435 16 C -0.151 4.151 17 O -0.047 6.047 18 C -0.060 4.060 19 C -0.230 4.230 20 C -0.124 4.124 21 C -0.094 4.094 22 C -0.145 4.145 23 C -0.082 4.082 24 H 0.075 0.925 25 H 0.095 0.905 26 H 0.122 0.878 27 H 0.129 0.871 28 H 0.113 0.887 29 H 0.028 0.972 30 H 0.038 0.962 31 H 0.204 0.796 32 H 0.068 0.932 33 H 0.249 0.751 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.121 0.879 38 H 0.111 0.889 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.769 -16.198 14.754 21.924 hybrid contribution 0.293 1.012 -0.029 1.054 sum -0.476 -15.186 14.725 21.158 Atomic orbital electron populations 1.21920 0.76545 1.04612 1.02707 1.47736 1.08481 1.05378 1.71634 1.21979 0.98131 0.84913 0.96769 1.20924 0.93894 0.86907 0.95735 1.42357 1.67967 1.23711 1.05264 1.18913 1.28068 1.03268 0.86689 0.93492 1.25545 1.00326 0.98650 1.00604 1.69898 1.44289 1.21832 1.27445 0.85360 0.79240 0.77200 0.79694 1.19867 1.22363 1.16916 1.16836 0.83953 0.83939 0.76475 1.90793 1.68070 1.31804 1.52797 1.21057 0.90976 0.85627 1.17431 1.84512 1.16787 1.32926 1.70513 1.24197 0.85337 0.95587 1.00923 1.21736 0.97126 0.94695 1.09434 1.21705 0.93632 0.97763 0.99267 1.20687 0.99774 0.86697 1.02249 1.22396 0.91780 0.98645 1.01692 1.20557 0.95972 0.88798 1.02863 0.92469 0.90510 0.87781 0.87106 0.88735 0.97198 0.96171 0.79561 0.93192 0.75097 0.90733 0.89921 0.89991 0.87885 0.88864 0.89552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.89 10.39 127.77 1.33 3.21 16 2 N -0.60 -17.61 2.89 -851.53 -2.46 -20.07 16 3 C 0.10 3.12 5.14 86.38 0.44 3.57 16 4 C 0.15 6.02 6.10 86.38 0.53 6.55 16 5 N -0.75 -34.32 5.41 -343.45 -1.86 -36.18 16 6 C -0.24 -13.66 10.47 84.03 0.88 -12.78 16 7 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 8 C -0.06 -3.47 5.50 84.86 0.47 -3.01 16 9 N -0.98 -62.79 13.97 21.65 0.30 -62.48 16 10 Si 0.96 43.66 27.74 68.60 1.90 45.56 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 12 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 13 H -0.24 -9.77 6.52 99.48 0.65 -9.12 16 14 C 0.60 20.20 7.58 86.44 0.66 20.86 16 15 O -0.55 -20.60 16.58 -4.35 -0.07 -20.67 16 16 C -0.10 -3.27 6.58 24.06 0.16 -3.11 16 17 O -0.15 -4.82 6.15 -5.47 -0.03 -4.85 16 18 C 0.01 0.23 12.08 67.11 0.81 1.04 16 19 C -0.23 -5.68 6.93 -19.94 -0.14 -5.81 16 20 C -0.12 -3.48 6.66 -19.66 -0.13 -3.62 16 21 C -0.06 -1.28 6.76 30.43 0.21 -1.08 16 22 C -0.11 -1.62 7.06 31.52 0.22 -1.40 16 23 C -0.04 -0.76 6.76 30.45 0.21 -0.55 16 24 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.08 1.70 7.64 -2.38 -0.02 1.68 16 26 H 0.10 1.74 7.78 -2.39 -0.02 1.72 16 27 H 0.11 2.73 7.78 -2.39 -0.02 2.71 16 28 H 0.09 2.83 5.36 -2.39 -0.01 2.81 16 29 H 0.01 0.44 7.12 -2.39 -0.02 0.42 16 30 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.37 15.62 5.53 -92.71 -0.51 15.11 16 32 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 33 H 0.23 4.57 8.06 -2.91 -0.02 4.55 16 34 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 37 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -75.00 322.24 3.91 -71.10 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: 0.49 Total: 23.73 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 5.63 Total: 3.87 kcal Atomic # 7 Polarization: -114.72 SS G_CDS: -4.01 Total: -118.74 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.11 Total: -25.52 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.90 Total: 45.56 kcal Total: -75.00 3.91 -71.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731936237.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.590 kcal (2) G-P(sol) polarization free energy of solvation -75.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds