Wall clock time and date at job start Tue Mar 31 2020 00:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46507 * 109.47095 * 2 1 4 4 C 1.46497 * 119.99516 * 269.99687 * 3 2 1 5 5 C 1.52997 * 109.47392 * 269.99580 * 4 3 2 6 6 N 1.46497 * 109.47001 * 179.97438 * 5 4 3 7 7 C 1.36936 * 119.99897 * 180.02562 * 6 5 4 8 8 H 1.07996 * 120.00205 * 0.02562 * 7 6 5 9 9 C 1.38809 * 120.00092 * 180.02562 * 7 6 5 10 10 N 1.31620 * 120.00235 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 120.00147 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47247 * 89.99936 * 11 9 7 13 13 H 1.48507 * 109.47287 * 209.99987 * 11 9 7 14 14 H 1.48506 * 109.47062 * 329.99935 * 11 9 7 15 15 C 1.34771 * 120.00005 * 89.99836 * 3 2 1 16 16 O 1.21775 * 120.00223 * 179.97438 * 15 3 2 17 17 C 1.41551 * 120.00071 * 0.02562 * 15 3 2 18 18 C 1.35628 * 119.99880 * 179.97438 * 17 15 3 19 19 C 1.41607 * 120.00192 * 179.97438 * 18 17 15 20 20 C 1.37946 * 126.10697 * 179.97438 * 19 18 17 21 21 C 1.40318 * 106.53073 * 179.76679 * 20 19 18 22 22 C 1.35157 * 107.20369 * 0.35473 * 21 20 19 23 23 O 1.34019 * 109.03356 * 359.63918 * 22 21 20 24 24 H 1.08998 * 109.47386 * 60.00190 * 1 2 3 25 25 H 1.08999 * 109.47062 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47451 * 300.00090 * 1 2 3 27 27 H 1.08995 * 109.47683 * 239.99832 * 2 1 3 28 28 H 1.09005 * 109.47339 * 119.99375 * 2 1 3 29 29 H 1.08998 * 109.47138 * 30.00659 * 4 3 2 30 30 H 1.09004 * 109.46421 * 150.00206 * 4 3 2 31 31 H 1.08994 * 109.47423 * 300.00478 * 5 4 3 32 32 H 1.09004 * 109.46827 * 60.00874 * 5 4 3 33 33 H 0.97000 * 120.00672 * 0.02562 * 6 5 4 34 34 H 0.96995 * 120.00155 * 180.02562 * 10 9 7 35 35 H 1.08000 * 120.00503 * 359.97438 * 17 15 3 36 36 H 1.08004 * 120.00105 * 359.97438 * 18 17 15 37 37 H 1.08000 * 126.73550 * 0.02562 * 20 19 18 38 38 H 1.07993 * 126.40042 * 180.21834 * 21 20 19 39 39 H 1.08002 * 125.48574 * 179.91132 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.7075 1.8314 -1.7104 6 7 3.9514 2.5214 -2.9795 7 6 5.1834 2.4484 -3.5727 8 1 5.9751 1.8819 -3.1053 9 6 5.4147 3.1026 -4.7749 10 7 6.5988 3.0321 -5.3454 11 14 4.0456 4.0832 -5.5832 12 1 4.0881 5.4859 -5.0975 13 1 4.2266 4.0640 -7.0570 14 1 2.7337 3.4792 -5.2376 15 6 2.2429 2.0166 1.1672 16 8 2.6492 3.1646 1.1672 17 6 2.0074 1.3492 2.3930 18 6 2.2340 1.9884 3.5676 19 6 1.9980 1.3210 4.7940 20 6 2.1851 1.8475 6.0552 21 6 1.8235 0.8424 6.9651 22 6 1.4465 -0.2351 6.2416 23 8 1.5495 0.0563 4.9375 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 1.5816 1.6877 -2.0284 30 1 2.0955 3.1410 -1.1384 31 1 4.3882 2.2156 -0.9508 32 1 3.8745 0.7622 -1.8407 33 1 3.2403 3.0300 -3.3996 34 1 6.7605 3.4895 -6.1853 35 1 1.6475 0.3309 2.3931 36 1 2.5944 3.0065 3.5676 37 1 2.5366 2.8401 6.2952 38 1 1.8447 0.9154 8.0424 39 1 1.1116 -1.1777 6.6487 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732759965.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:41 Heat of formation + Delta-G solvation = 19.129687 kcal Electronic energy + Delta-G solvation = -20739.892717 eV Core-core repulsion = 17457.677990 eV Total energy + Delta-G solvation = -3282.214727 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -42.87433 -40.09461 -36.39091 -34.82149 -34.30626 -33.37557 -31.80289 -30.51385 -29.57924 -27.83067 -24.79284 -23.64064 -22.79725 -22.16589 -21.37592 -20.42052 -18.63007 -18.09136 -17.48918 -17.04586 -16.41889 -16.20196 -15.21922 -14.94352 -14.46865 -14.07736 -13.92443 -13.70291 -13.61404 -13.34827 -13.12975 -12.90233 -12.74417 -12.56228 -12.40742 -11.91447 -11.53335 -11.27014 -11.11612 -11.02319 -10.86415 -10.69288 -10.24957 -10.13823 -9.81444 -9.56257 -8.85713 -8.61049 -8.22128 -7.20351 -5.72787 -3.08747 0.20972 1.81949 2.41891 2.60698 3.07972 3.40841 3.42894 3.44733 3.48834 4.34040 4.56610 4.59112 4.63164 4.73835 4.91871 4.96570 5.07939 5.27694 5.32378 5.41619 5.44873 5.51582 5.59688 5.63093 5.69113 5.71564 5.78302 5.80675 5.96246 6.00800 6.04734 6.13592 6.52669 6.68508 6.72142 6.87084 7.48105 8.02739 8.26152 8.45669 9.24370 9.96540 10.16088 11.45646 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030913 B = 0.003101 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.553844 B = 9025.723470 C = 9417.283741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.602 5.602 4 C 0.105 3.895 5 C 0.147 3.853 6 N -0.754 5.754 7 C -0.242 4.242 8 H 0.090 0.910 9 C 0.003 3.997 10 N -0.935 5.935 11 Si 0.886 3.114 12 H -0.283 1.283 13 H -0.291 1.291 14 H -0.277 1.277 15 C 0.545 3.455 16 O -0.539 6.539 17 C -0.199 4.199 18 C 0.001 3.999 19 C -0.004 4.004 20 C -0.167 4.167 21 C -0.218 4.218 22 C -0.024 4.024 23 O -0.166 6.166 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.032 0.968 32 H 0.026 0.974 33 H 0.361 0.639 34 H 0.259 0.741 35 H 0.133 0.867 36 H 0.161 0.839 37 H 0.157 0.843 38 H 0.153 0.847 39 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.626 -8.748 23.765 29.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.335 5.335 4 C -0.018 4.018 5 C 0.019 3.981 6 N -0.400 5.400 7 C -0.372 4.372 8 H 0.107 0.893 9 C -0.192 4.192 10 N -0.583 5.583 11 Si 0.717 3.283 12 H -0.210 1.210 13 H -0.217 1.217 14 H -0.203 1.203 15 C 0.337 3.663 16 O -0.419 6.419 17 C -0.219 4.219 18 C -0.019 4.019 19 C -0.053 4.053 20 C -0.186 4.186 21 C -0.237 4.237 22 C -0.093 4.093 23 O -0.061 6.061 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.104 0.896 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.050 0.950 32 H 0.044 0.956 33 H 0.193 0.807 34 H 0.069 0.931 35 H 0.151 0.849 36 H 0.178 0.822 37 H 0.174 0.826 38 H 0.170 0.830 39 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -15.241 -8.406 23.438 29.194 hybrid contribution -0.869 0.584 -0.474 1.149 sum -16.110 -7.822 22.964 29.121 Atomic orbital electron populations 1.22223 0.95861 1.02228 1.02634 1.21650 0.94358 0.82541 1.03683 1.47815 1.65186 1.14220 1.06241 1.21705 0.98053 0.98467 0.83592 1.20890 0.92859 0.95817 0.88573 1.42562 1.12399 1.61881 1.23138 1.19037 0.88290 1.27009 1.02830 0.89253 1.24673 0.96502 1.00437 0.97626 1.69704 1.20974 1.47925 1.19701 0.86514 0.82214 0.80725 0.78878 1.20975 1.21724 1.20342 1.16987 0.78540 0.86444 0.84370 1.90866 1.45636 1.17639 1.87718 1.22275 1.05179 1.01666 0.92822 1.20704 0.94024 0.99296 0.87877 1.19925 1.06309 0.83578 0.95495 1.22389 1.03936 1.01275 0.91038 1.21797 1.06857 0.93961 1.01101 1.24311 1.04015 1.01044 0.79902 1.84105 1.65285 1.29074 1.27683 0.92069 0.91471 0.92483 0.89632 0.90221 0.90610 0.89721 0.95025 0.95622 0.80674 0.93062 0.84938 0.82163 0.82568 0.82959 0.77752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 10.24 37.15 0.38 -1.10 16 2 C 0.10 1.04 5.81 -4.04 -0.02 1.02 16 3 N -0.60 -8.55 2.47 -177.12 -0.44 -8.99 16 4 C 0.10 1.76 5.52 -4.04 -0.02 1.73 16 5 C 0.15 3.07 6.58 -4.04 -0.03 3.04 16 6 N -0.75 -18.92 5.41 -59.91 -0.32 -19.24 16 7 C -0.24 -7.16 10.47 -15.06 -0.16 -7.32 16 8 H 0.09 2.83 8.06 -52.49 -0.42 2.41 16 9 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 10 N -0.93 -30.15 13.97 55.49 0.78 -29.37 16 11 Si 0.89 22.70 27.74 -169.99 -4.71 17.99 16 12 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 13 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 14 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 15 C 0.55 8.32 7.44 -15.00 -0.11 8.21 16 16 O -0.54 -10.31 15.69 5.12 0.08 -10.23 16 17 C -0.20 -2.35 8.68 -39.25 -0.34 -2.69 16 18 C 0.00 0.01 9.39 -39.23 -0.37 -0.36 16 19 C 0.00 -0.04 6.84 -38.40 -0.26 -0.30 16 20 C -0.17 -1.42 10.90 -38.91 -0.42 -1.84 16 21 C -0.22 -1.53 10.87 -39.90 -0.43 -1.96 16 22 C -0.02 -0.16 12.06 29.64 0.36 0.20 16 23 O -0.17 -1.57 10.18 4.67 0.05 -1.52 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.09 0.87 8.07 -51.93 -0.42 0.45 16 28 H 0.08 0.69 6.08 -51.93 -0.32 0.38 16 29 H 0.08 1.14 8.07 -51.93 -0.42 0.72 16 30 H 0.08 1.55 7.42 -51.93 -0.39 1.16 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.36 8.71 5.53 -40.82 -0.23 8.48 16 34 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 35 H 0.13 1.30 5.75 -52.49 -0.30 1.00 16 36 H 0.16 1.76 7.46 -52.48 -0.39 1.37 16 37 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.21 0.55 8.06 -52.49 -0.42 0.12 16 LS Contribution 336.12 15.07 5.07 5.07 Total: -1.00 -36.10 336.12 -6.47 -42.57 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -5.43 Total: 5.11 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -1.53 Total: -1.37 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: 0.01 Total: -57.61 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.13 Total: -11.75 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.71 Total: 17.99 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.10 -6.47 -42.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732759965.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.696 kcal (2) G-P(sol) polarization free energy of solvation -36.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds