Wall clock time and date at job start Tue Mar 31 2020 00:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46507 * 109.47095 * 2 1 4 4 C 1.46497 * 119.99516 * 269.99687 * 3 2 1 5 5 C 1.52997 * 109.47392 * 269.99580 * 4 3 2 6 6 N 1.46497 * 109.47001 * 179.97438 * 5 4 3 7 7 C 1.36936 * 119.99897 * 180.02562 * 6 5 4 8 8 H 1.07996 * 120.00205 * 0.02562 * 7 6 5 9 9 C 1.38809 * 120.00092 * 180.02562 * 7 6 5 10 10 N 1.31620 * 120.00235 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 120.00147 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47247 * 89.99936 * 11 9 7 13 13 H 1.48507 * 109.47287 * 209.99987 * 11 9 7 14 14 H 1.48506 * 109.47062 * 329.99935 * 11 9 7 15 15 C 1.34771 * 120.00005 * 89.99836 * 3 2 1 16 16 O 1.21775 * 120.00223 * 179.97438 * 15 3 2 17 17 C 1.41551 * 120.00071 * 0.02562 * 15 3 2 18 18 C 1.35628 * 119.99880 * 179.97438 * 17 15 3 19 19 C 1.41607 * 120.00192 * 179.97438 * 18 17 15 20 20 C 1.37946 * 126.10697 * 179.97438 * 19 18 17 21 21 C 1.40318 * 106.53073 * 179.76679 * 20 19 18 22 22 C 1.35157 * 107.20369 * 0.35473 * 21 20 19 23 23 O 1.34019 * 109.03356 * 359.63918 * 22 21 20 24 24 H 1.08998 * 109.47386 * 60.00190 * 1 2 3 25 25 H 1.08999 * 109.47062 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47451 * 300.00090 * 1 2 3 27 27 H 1.08995 * 109.47683 * 239.99832 * 2 1 3 28 28 H 1.09005 * 109.47339 * 119.99375 * 2 1 3 29 29 H 1.08998 * 109.47138 * 30.00659 * 4 3 2 30 30 H 1.09004 * 109.46421 * 150.00206 * 4 3 2 31 31 H 1.08994 * 109.47423 * 300.00478 * 5 4 3 32 32 H 1.09004 * 109.46827 * 60.00874 * 5 4 3 33 33 H 0.97000 * 120.00672 * 0.02562 * 6 5 4 34 34 H 0.96995 * 120.00155 * 180.02562 * 10 9 7 35 35 H 1.08000 * 120.00503 * 359.97438 * 17 15 3 36 36 H 1.08004 * 120.00105 * 359.97438 * 18 17 15 37 37 H 1.08000 * 126.73550 * 0.02562 * 20 19 18 38 38 H 1.07993 * 126.40042 * 180.21834 * 21 20 19 39 39 H 1.08002 * 125.48574 * 179.91132 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.7075 1.8314 -1.7104 6 7 3.9514 2.5214 -2.9795 7 6 5.1834 2.4484 -3.5727 8 1 5.9751 1.8819 -3.1053 9 6 5.4147 3.1026 -4.7749 10 7 6.5988 3.0321 -5.3454 11 14 4.0456 4.0832 -5.5832 12 1 4.0881 5.4859 -5.0975 13 1 4.2266 4.0640 -7.0570 14 1 2.7337 3.4792 -5.2376 15 6 2.2429 2.0166 1.1672 16 8 2.6492 3.1646 1.1672 17 6 2.0074 1.3492 2.3930 18 6 2.2340 1.9884 3.5676 19 6 1.9980 1.3210 4.7940 20 6 2.1851 1.8475 6.0552 21 6 1.8235 0.8424 6.9651 22 6 1.4465 -0.2351 6.2416 23 8 1.5495 0.0563 4.9375 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 1.5816 1.6877 -2.0284 30 1 2.0955 3.1410 -1.1384 31 1 4.3882 2.2156 -0.9508 32 1 3.8745 0.7622 -1.8407 33 1 3.2403 3.0300 -3.3996 34 1 6.7605 3.4895 -6.1853 35 1 1.6475 0.3309 2.3931 36 1 2.5944 3.0065 3.5676 37 1 2.5366 2.8401 6.2952 38 1 1.8447 0.9154 8.0424 39 1 1.1116 -1.1777 6.6487 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732759965.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:41 Heat of formation + Delta-G solvation = -5.340541 kcal Electronic energy + Delta-G solvation = -20740.953825 eV Core-core repulsion = 17457.677990 eV Total energy + Delta-G solvation = -3283.275836 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.49392 -41.24145 -37.73461 -36.49870 -35.27824 -34.02344 -33.74343 -31.80517 -30.52780 -29.13920 -26.13273 -24.77886 -24.02615 -23.09052 -22.75260 -21.25922 -19.95110 -19.38553 -18.87102 -17.86808 -17.39288 -17.05773 -16.57398 -16.35185 -15.79290 -15.50563 -15.27569 -15.12440 -14.79081 -14.68338 -13.91930 -13.80723 -13.68585 -13.56948 -13.42527 -13.11082 -13.02125 -12.89006 -12.63464 -12.33668 -12.10880 -12.00320 -11.84611 -11.70336 -11.04801 -10.99520 -10.84489 -9.78893 -9.38653 -8.94623 -8.06689 -5.42730 -0.60501 1.15799 1.36301 1.41994 1.48508 1.70662 1.96548 2.02791 2.40278 2.46289 3.24151 3.54326 3.71041 3.92840 3.96631 4.05153 4.11935 4.12932 4.16429 4.28304 4.40553 4.51648 4.56302 4.67121 4.83108 4.88610 4.93678 5.01776 5.03566 5.05579 5.10272 5.21220 5.36136 5.53954 5.54227 5.69749 6.08478 6.16174 6.38868 7.01316 7.12484 7.74639 7.96667 9.14701 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030913 B = 0.003101 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.553844 B = 9025.723470 C = 9417.283741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.094 3.906 3 N -0.602 5.602 4 C 0.118 3.882 5 C 0.150 3.850 6 N -0.754 5.754 7 C -0.243 4.243 8 H 0.051 0.949 9 C -0.063 4.063 10 N -0.983 5.983 11 Si 0.961 3.039 12 H -0.280 1.280 13 H -0.290 1.290 14 H -0.245 1.245 15 C 0.541 3.459 16 O -0.592 6.592 17 C -0.221 4.221 18 C 0.022 3.978 19 C -0.042 4.042 20 C -0.159 4.159 21 C -0.232 4.232 22 C -0.007 4.007 23 O -0.179 6.179 24 H 0.053 0.947 25 H 0.091 0.909 26 H 0.054 0.946 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.068 0.932 31 H 0.003 0.997 32 H 0.033 0.967 33 H 0.369 0.631 34 H 0.260 0.740 35 H 0.154 0.846 36 H 0.152 0.848 37 H 0.169 0.831 38 H 0.178 0.822 39 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.443 -10.005 25.471 33.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.027 4.027 3 N -0.333 5.333 4 C -0.006 4.006 5 C 0.023 3.977 6 N -0.401 5.401 7 C -0.373 4.373 8 H 0.070 0.930 9 C -0.254 4.254 10 N -0.633 5.633 11 Si 0.787 3.213 12 H -0.207 1.207 13 H -0.216 1.216 14 H -0.169 1.169 15 C 0.335 3.665 16 O -0.476 6.476 17 C -0.241 4.241 18 C 0.002 3.998 19 C -0.091 4.091 20 C -0.178 4.178 21 C -0.251 4.251 22 C -0.076 4.076 23 O -0.074 6.074 24 H 0.072 0.928 25 H 0.110 0.890 26 H 0.073 0.927 27 H 0.107 0.893 28 H 0.116 0.884 29 H 0.120 0.880 30 H 0.086 0.914 31 H 0.021 0.979 32 H 0.051 0.949 33 H 0.202 0.798 34 H 0.069 0.931 35 H 0.171 0.829 36 H 0.170 0.830 37 H 0.186 0.814 38 H 0.195 0.805 39 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -18.104 -9.714 25.175 32.495 hybrid contribution 0.086 0.875 -0.730 1.143 sum -18.018 -8.839 24.445 31.628 Atomic orbital electron populations 1.22163 0.94197 1.03663 1.02164 1.21949 0.95678 0.80289 1.04776 1.47908 1.64815 1.15606 1.04966 1.21396 0.95450 0.98203 0.85523 1.20945 0.95285 0.95341 0.86130 1.42503 1.11013 1.62350 1.24217 1.18980 0.89216 1.26185 1.02951 0.93050 1.25587 0.99477 1.01991 0.98386 1.69891 1.23651 1.49369 1.20342 0.85332 0.79942 0.78753 0.77310 1.20665 1.21585 1.16918 1.17526 0.77446 0.85929 0.85570 1.90830 1.48400 1.19942 1.88429 1.22093 1.08126 1.02614 0.91279 1.20725 0.91744 0.98859 0.88514 1.19810 1.09390 0.84520 0.95384 1.22792 1.01950 1.02131 0.90975 1.22187 1.07024 0.93542 1.02336 1.25248 1.01246 1.02252 0.78833 1.84098 1.65463 1.28698 1.29185 0.92799 0.89022 0.92691 0.89277 0.88423 0.88027 0.91359 0.97898 0.94934 0.79775 0.93083 0.82859 0.83041 0.81380 0.80467 0.73768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 10.24 71.98 0.74 -1.70 16 2 C 0.09 1.78 5.81 86.38 0.50 2.28 16 3 N -0.60 -16.85 2.47 -832.48 -2.06 -18.91 16 4 C 0.12 3.92 5.52 86.38 0.48 4.39 16 5 C 0.15 6.39 6.58 86.38 0.57 6.96 16 6 N -0.75 -37.94 5.41 -343.47 -1.86 -39.79 16 7 C -0.24 -14.72 10.47 84.03 0.88 -13.84 16 8 H 0.05 3.43 8.06 -2.91 -0.02 3.41 16 9 C -0.06 -3.85 5.50 84.86 0.47 -3.39 16 10 N -0.98 -64.95 13.97 21.65 0.30 -64.65 16 11 Si 0.96 46.72 27.74 68.60 1.90 48.62 16 12 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 13 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 14 H -0.25 -10.53 6.52 99.48 0.65 -9.88 16 15 C 0.54 16.86 7.44 85.06 0.63 17.49 16 16 O -0.59 -23.76 15.69 -4.59 -0.07 -23.84 16 17 C -0.22 -5.19 8.68 22.48 0.20 -4.99 16 18 C 0.02 0.48 9.39 22.50 0.21 0.69 16 19 C -0.04 -0.80 6.84 23.03 0.16 -0.64 16 20 C -0.16 -2.42 10.90 22.71 0.25 -2.17 16 21 C -0.23 -2.53 10.87 22.07 0.24 -2.29 16 22 C -0.01 -0.07 12.06 67.11 0.81 0.74 16 23 O -0.18 -2.97 10.18 -6.21 -0.06 -3.03 16 24 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.09 1.63 8.07 -2.39 -0.02 1.61 16 28 H 0.10 1.50 6.08 -2.38 -0.01 1.48 16 29 H 0.10 2.85 8.07 -2.39 -0.02 2.83 16 30 H 0.07 2.51 7.42 -2.38 -0.02 2.49 16 31 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.37 17.27 5.53 -92.71 -0.51 16.76 16 34 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 35 H 0.15 2.81 5.75 -2.91 -0.02 2.79 16 36 H 0.15 3.52 7.46 -2.91 -0.02 3.50 16 37 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 38 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 39 H 0.25 0.12 8.06 -2.91 -0.02 0.10 16 Total: -1.00 -81.34 336.12 4.76 -76.58 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 0.48 Total: 21.49 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 6.13 Total: 3.53 kcal Atomic # 7 Polarization: -119.74 SS G_CDS: -3.61 Total: -123.35 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.14 Total: -26.87 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 1.90 Total: 48.62 kcal Total: -81.34 4.76 -76.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732759965.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.238 kcal (2) G-P(sol) polarization free energy of solvation -81.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds