Wall clock time and date at job start Tue Mar 31 2020 01:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36932 * 120.00217 * 2 1 4 4 H 1.08001 * 119.99945 * 161.89934 * 3 2 1 5 5 C 1.38807 * 120.00279 * 341.90380 * 3 2 1 6 6 N 1.31623 * 119.99822 * 344.91114 * 5 3 2 7 7 Si 1.86798 * 120.00443 * 164.91659 * 5 3 2 8 8 H 1.48499 * 109.47057 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.47483 * 119.99758 * 7 5 3 10 10 H 1.48501 * 109.47034 * 239.99914 * 7 5 3 11 11 C 1.46503 * 119.99724 * 179.72164 * 2 1 3 12 12 C 1.53002 * 109.47434 * 270.28286 * 11 2 1 13 13 N 1.46498 * 109.47085 * 180.02562 * 12 11 2 14 14 C 1.34776 * 119.99691 * 179.97438 * 13 12 11 15 15 O 1.21281 * 120.00244 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99975 * 179.97438 * 14 13 12 17 17 H 1.09002 * 115.54898 * 34.27874 * 16 14 13 18 18 C 1.53005 * 117.49885 * 248.61414 * 16 14 13 19 19 C 1.52999 * 59.99902 * 252.50981 * 18 16 14 20 20 H 1.08997 * 117.49940 * 107.49244 * 19 18 16 21 21 C 1.50699 * 117.49692 * 252.51201 * 19 18 16 22 22 C 1.34515 * 125.78639 * 188.62275 * 21 19 18 23 23 C 1.41386 * 106.84134 * 179.97438 * 22 21 19 24 24 C 1.34514 * 106.83963 * 359.97438 * 23 22 21 25 25 O 1.34302 * 125.79436 * 8.31296 * 21 19 18 26 26 H 1.09001 * 109.47324 * 84.98152 * 1 2 3 27 27 H 1.08997 * 109.47979 * 204.98436 * 1 2 3 28 28 H 1.09003 * 109.47380 * 324.98961 * 1 2 3 29 29 H 0.96995 * 120.00295 * 179.97438 * 6 5 3 30 30 H 1.09004 * 109.47241 * 30.27926 * 11 2 1 31 31 H 1.08999 * 109.47244 * 150.27402 * 11 2 1 32 32 H 1.09007 * 109.46585 * 299.99491 * 12 11 2 33 33 H 1.08995 * 109.47155 * 59.99258 * 12 11 2 34 34 H 0.96994 * 120.00334 * 359.97438 * 13 12 11 35 35 H 1.08999 * 117.50060 * 0.02562 * 18 16 14 36 36 H 1.08999 * 117.49769 * 145.01565 * 18 16 14 37 37 H 1.08004 * 126.58465 * 0.03795 * 22 21 19 38 38 H 1.07998 * 126.58435 * 179.97438 * 23 22 21 39 39 H 1.08003 * 125.79228 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1896 1.2089 0.2906 5 6 1.5072 2.3583 -0.3734 6 7 0.3528 2.3042 -1.0034 7 14 2.2809 4.0128 0.0181 8 1 3.5688 3.8018 0.7267 9 1 2.5259 4.7558 -1.2441 10 1 1.3629 4.7962 0.8835 11 6 2.1974 -1.2688 0.0062 12 6 2.4463 -1.7071 1.4508 13 7 3.1792 -2.9755 1.4569 14 6 3.5117 -3.5560 2.6269 15 8 3.2037 -3.0286 3.6747 16 6 4.2652 -4.8611 2.6332 17 1 4.9830 -4.9934 1.8237 18 6 3.5221 -6.1035 3.1285 19 6 4.6133 -5.4693 3.9933 20 1 4.2975 -4.9254 4.8835 21 6 5.9230 -6.2054 4.1115 22 6 6.9291 -5.8914 4.9473 23 6 7.9553 -6.8387 4.7270 24 6 7.5147 -7.6753 3.7703 25 8 6.2812 -7.2896 3.4046 26 1 -0.3634 0.0899 -1.0237 27 1 -0.3635 -0.9314 0.4340 28 1 -0.3634 0.8417 0.5896 29 1 -0.0963 3.1234 -1.2640 30 1 1.6105 -2.0297 -0.5083 31 1 3.1519 -1.1398 -0.5040 32 1 3.0333 -0.9462 1.9653 33 1 1.4917 -1.8360 1.9609 34 1 3.4252 -3.3975 0.6189 35 1 2.4881 -5.9770 3.4494 36 1 3.7514 -7.0531 2.6451 37 1 6.9489 -5.0734 5.6522 38 1 8.9099 -6.8824 5.2303 39 1 8.0588 -8.5167 3.3673 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753064771.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:05 Heat of formation + Delta-G solvation = 29.505863 kcal Electronic energy + Delta-G solvation = -20504.987314 eV Core-core repulsion = 17223.222531 eV Total energy + Delta-G solvation = -3281.764782 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.82753 -39.83860 -36.91658 -35.91099 -34.17491 -33.22966 -31.36145 -29.81313 -28.29934 -25.90909 -24.77676 -23.43560 -22.66251 -21.91529 -20.69846 -20.40183 -19.82178 -17.89643 -17.17001 -16.68359 -16.20701 -15.77914 -15.32276 -14.90280 -14.74147 -14.24840 -13.78865 -13.45513 -13.16809 -13.04196 -12.86127 -12.72722 -12.48882 -12.32081 -12.16000 -11.25811 -11.17089 -10.92612 -10.87087 -10.78228 -10.59890 -10.33871 -10.13598 -9.96908 -9.92006 -9.73183 -8.74858 -8.60476 -8.54954 -6.86672 -5.75335 -3.18530 1.39703 2.30948 2.60733 2.68188 3.31103 3.38710 3.46020 3.48500 3.67970 4.24351 4.43667 4.49960 4.59982 4.75319 4.81896 4.99771 5.05280 5.36763 5.38544 5.54476 5.61546 5.63150 5.69025 5.79448 5.80974 5.86009 5.89686 6.22996 6.24450 6.57106 6.62614 6.74804 6.86376 6.89019 7.39472 7.68367 7.71513 7.80463 8.33243 8.40186 9.20134 9.83313 10.29154 11.30325 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032637 B = 0.002769 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.722753 B =10109.206421 C =10558.267017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.599 5.599 3 C -0.257 4.257 4 H 0.071 0.929 5 C 0.000 4.000 6 N -0.908 5.908 7 Si 0.905 3.095 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.289 1.289 11 C 0.144 3.856 12 C 0.094 3.906 13 N -0.717 5.717 14 C 0.538 3.462 15 O -0.543 6.543 16 C -0.173 4.173 17 H 0.126 0.874 18 C -0.138 4.138 19 C -0.051 4.051 20 H 0.148 0.852 21 C 0.019 3.981 22 C -0.202 4.202 23 C -0.212 4.212 24 C -0.045 4.045 25 O -0.176 6.176 26 H 0.030 0.970 27 H -0.002 1.002 28 H 0.047 0.953 29 H 0.252 0.748 30 H 0.042 0.958 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.398 0.602 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.925 -20.895 7.298 24.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.322 5.322 3 C -0.386 4.386 4 H 0.089 0.911 5 C -0.198 4.198 6 N -0.553 5.553 7 Si 0.735 3.265 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.215 1.215 11 C 0.016 3.984 12 C -0.032 4.032 13 N -0.367 5.367 14 C 0.323 3.677 15 O -0.421 6.421 16 C -0.194 4.194 17 H 0.144 0.856 18 C -0.175 4.175 19 C -0.069 4.069 20 H 0.166 0.834 21 C -0.030 4.030 22 C -0.221 4.221 23 C -0.231 4.231 24 C -0.112 4.112 25 O -0.072 6.072 26 H 0.048 0.952 27 H 0.016 0.984 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.232 0.768 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.168 0.832 38 H 0.166 0.834 39 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 10.369 -20.445 7.739 24.195 hybrid contribution 0.806 0.842 -0.100 1.170 sum 11.175 -19.602 7.639 23.822 Atomic orbital electron populations 1.20850 0.82094 0.95730 0.99553 1.43843 1.02099 1.00353 1.85910 1.19267 0.95727 0.84632 1.38996 0.91073 1.24933 0.97599 0.98350 0.98892 1.70119 1.17387 1.26463 1.41338 0.86170 0.78577 0.84076 0.77645 1.20281 1.21745 1.21535 1.20827 0.96724 0.89119 0.91776 1.22476 0.95651 0.82929 1.02161 1.45996 1.57845 1.25029 1.07859 1.19462 0.79227 0.84847 0.84163 1.90705 1.54962 1.64713 1.31696 1.22425 1.03949 0.93814 0.99224 0.85586 1.23081 0.97651 0.95561 1.01213 1.20490 0.89665 1.00461 0.96300 0.83426 1.21381 0.96752 0.89197 0.95712 1.21589 0.93841 1.02934 1.03709 1.21856 1.01530 0.97858 1.01905 1.24016 0.84404 1.02363 1.00410 1.83969 1.30776 1.38468 1.54015 0.95160 0.98366 0.93381 0.93751 0.94004 0.92943 0.91457 0.92150 0.76820 0.87163 0.87164 0.83249 0.83396 0.78062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.01 8.97 59.84 0.54 4.55 16 2 N -0.60 -15.01 2.93 -181.12 -0.53 -15.54 16 3 C -0.26 -7.07 9.69 -15.06 -0.15 -7.22 16 4 H 0.07 1.92 7.87 -52.49 -0.41 1.50 16 5 C 0.00 0.01 5.07 -17.43 -0.09 -0.08 16 6 N -0.91 -26.51 10.54 55.49 0.59 -25.93 16 7 Si 0.91 22.03 29.58 -169.99 -5.03 17.00 16 8 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 C 0.14 2.82 5.76 -4.04 -0.02 2.80 16 12 C 0.09 1.71 6.00 -4.04 -0.02 1.68 16 13 N -0.72 -10.25 5.56 -60.29 -0.33 -10.58 16 14 C 0.54 7.96 7.61 -10.99 -0.08 7.88 16 15 O -0.54 -10.22 16.26 5.56 0.09 -10.13 16 16 C -0.17 -1.89 5.89 -91.77 -0.54 -2.43 16 17 H 0.13 1.18 8.14 -51.93 -0.42 0.76 16 18 C -0.14 -1.28 9.87 -26.73 -0.26 -1.54 16 19 C -0.05 -0.54 5.75 -91.77 -0.53 -1.07 16 20 H 0.15 1.68 7.67 -51.93 -0.40 1.28 16 21 C 0.02 0.21 6.80 -35.63 -0.24 -0.03 16 22 C -0.20 -2.08 10.81 -39.70 -0.43 -2.51 16 23 C -0.21 -1.85 10.91 -39.70 -0.43 -2.28 16 24 C -0.04 -0.36 12.09 29.42 0.36 0.00 16 25 O -0.18 -1.79 10.36 5.71 0.06 -1.73 16 26 H 0.03 0.80 7.47 -51.93 -0.39 0.41 16 27 H 0.00 -0.05 8.03 -51.93 -0.42 -0.47 16 28 H 0.05 1.29 7.05 -51.93 -0.37 0.92 16 29 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.04 0.74 8.07 -51.93 -0.42 0.32 16 31 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 32 H 0.07 1.40 8.14 -51.92 -0.42 0.97 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.40 4.42 8.47 -40.82 -0.35 4.08 16 35 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.11 0.87 7.96 -51.93 -0.41 0.46 16 37 H 0.15 1.38 8.06 -52.48 -0.42 0.96 16 38 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.20 0.82 8.06 -52.48 -0.42 0.40 16 LS Contribution 337.47 15.07 5.09 5.09 Total: -1.00 -33.13 337.47 -7.66 -40.79 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -5.67 Total: 1.30 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -1.91 Total: -0.25 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: -0.28 Total: -52.05 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.15 Total: -11.87 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.13 -7.66 -40.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753064771.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.292 kcal (2) G-P(sol) polarization free energy of solvation -33.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds