Wall clock time and date at job start Tue Mar 31 2020 01:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36932 * 120.00217 * 2 1 4 4 H 1.08001 * 119.99945 * 161.89934 * 3 2 1 5 5 C 1.38807 * 120.00279 * 341.90380 * 3 2 1 6 6 N 1.31623 * 119.99822 * 344.91114 * 5 3 2 7 7 Si 1.86798 * 120.00443 * 164.91659 * 5 3 2 8 8 H 1.48499 * 109.47057 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.47483 * 119.99758 * 7 5 3 10 10 H 1.48501 * 109.47034 * 239.99914 * 7 5 3 11 11 C 1.46503 * 119.99724 * 179.72164 * 2 1 3 12 12 C 1.53002 * 109.47434 * 270.28286 * 11 2 1 13 13 N 1.46498 * 109.47085 * 180.02562 * 12 11 2 14 14 C 1.34776 * 119.99691 * 179.97438 * 13 12 11 15 15 O 1.21281 * 120.00244 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99975 * 179.97438 * 14 13 12 17 17 H 1.09002 * 115.54898 * 34.27874 * 16 14 13 18 18 C 1.53005 * 117.49885 * 248.61414 * 16 14 13 19 19 C 1.52999 * 59.99902 * 252.50981 * 18 16 14 20 20 H 1.08997 * 117.49940 * 107.49244 * 19 18 16 21 21 C 1.50699 * 117.49692 * 252.51201 * 19 18 16 22 22 C 1.34515 * 125.78639 * 188.62275 * 21 19 18 23 23 C 1.41386 * 106.84134 * 179.97438 * 22 21 19 24 24 C 1.34514 * 106.83963 * 359.97438 * 23 22 21 25 25 O 1.34302 * 125.79436 * 8.31296 * 21 19 18 26 26 H 1.09001 * 109.47324 * 84.98152 * 1 2 3 27 27 H 1.08997 * 109.47979 * 204.98436 * 1 2 3 28 28 H 1.09003 * 109.47380 * 324.98961 * 1 2 3 29 29 H 0.96995 * 120.00295 * 179.97438 * 6 5 3 30 30 H 1.09004 * 109.47241 * 30.27926 * 11 2 1 31 31 H 1.08999 * 109.47244 * 150.27402 * 11 2 1 32 32 H 1.09007 * 109.46585 * 299.99491 * 12 11 2 33 33 H 1.08995 * 109.47155 * 59.99258 * 12 11 2 34 34 H 0.96994 * 120.00334 * 359.97438 * 13 12 11 35 35 H 1.08999 * 117.50060 * 0.02562 * 18 16 14 36 36 H 1.08999 * 117.49769 * 145.01565 * 18 16 14 37 37 H 1.08004 * 126.58465 * 0.03795 * 22 21 19 38 38 H 1.07998 * 126.58435 * 179.97438 * 23 22 21 39 39 H 1.08003 * 125.79228 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1896 1.2089 0.2906 5 6 1.5072 2.3583 -0.3734 6 7 0.3528 2.3042 -1.0034 7 14 2.2809 4.0128 0.0181 8 1 3.5688 3.8018 0.7267 9 1 2.5259 4.7558 -1.2441 10 1 1.3629 4.7962 0.8835 11 6 2.1974 -1.2688 0.0062 12 6 2.4463 -1.7071 1.4508 13 7 3.1792 -2.9755 1.4569 14 6 3.5117 -3.5560 2.6269 15 8 3.2037 -3.0286 3.6747 16 6 4.2652 -4.8611 2.6332 17 1 4.9830 -4.9934 1.8237 18 6 3.5221 -6.1035 3.1285 19 6 4.6133 -5.4693 3.9933 20 1 4.2975 -4.9254 4.8835 21 6 5.9230 -6.2054 4.1115 22 6 6.9291 -5.8914 4.9473 23 6 7.9553 -6.8387 4.7270 24 6 7.5147 -7.6753 3.7703 25 8 6.2812 -7.2896 3.4046 26 1 -0.3634 0.0899 -1.0237 27 1 -0.3635 -0.9314 0.4340 28 1 -0.3634 0.8417 0.5896 29 1 -0.0963 3.1234 -1.2640 30 1 1.6105 -2.0297 -0.5083 31 1 3.1519 -1.1398 -0.5040 32 1 3.0333 -0.9462 1.9653 33 1 1.4917 -1.8360 1.9609 34 1 3.4252 -3.3975 0.6189 35 1 2.4881 -5.9770 3.4494 36 1 3.7514 -7.0531 2.6451 37 1 6.9489 -5.0734 5.6522 38 1 8.9099 -6.8824 5.2303 39 1 8.0588 -8.5167 3.3673 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753064771.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:05 Heat of formation + Delta-G solvation = 8.277904 kcal Electronic energy + Delta-G solvation = -20505.907827 eV Core-core repulsion = 17223.222531 eV Total energy + Delta-G solvation = -3282.685296 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -43.51570 -41.00900 -38.16444 -37.40955 -35.71460 -33.91777 -33.29637 -30.63979 -29.82412 -27.95870 -26.12125 -24.27105 -24.04995 -22.61505 -22.38420 -21.31030 -20.87450 -18.87900 -18.64476 -18.01947 -17.26702 -16.87288 -16.60394 -16.47129 -15.91243 -15.49781 -15.43302 -15.02525 -14.38277 -14.24684 -14.02890 -13.76134 -13.73188 -13.41334 -13.06344 -12.90685 -12.81899 -12.69383 -12.51188 -12.14869 -12.04032 -11.95817 -11.81177 -11.63190 -11.02181 -10.82739 -10.66137 -10.09868 -9.29923 -8.90427 -7.86620 -5.31609 0.68524 1.44153 1.44665 1.47327 1.57115 1.68819 1.94512 2.18306 2.51813 2.82248 3.27644 3.44245 3.57313 3.70418 3.84979 4.04178 4.11843 4.17577 4.21991 4.29076 4.37048 4.63824 4.66093 4.80672 4.84350 4.90502 5.02968 5.03564 5.05719 5.12360 5.20545 5.33440 5.47795 5.59136 5.59228 5.70636 6.19854 6.27841 6.56144 7.11246 7.23432 7.82799 8.23462 9.17681 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032637 B = 0.002769 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.722753 B =10109.206421 C =10558.267017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.619 5.619 3 C -0.264 4.264 4 H 0.073 0.927 5 C -0.055 4.055 6 N -0.937 5.937 7 Si 0.967 3.033 8 H -0.269 1.269 9 H -0.289 1.289 10 H -0.292 1.292 11 C 0.147 3.853 12 C 0.114 3.886 13 N -0.705 5.705 14 C 0.537 3.463 15 O -0.588 6.588 16 C -0.171 4.171 17 H 0.148 0.852 18 C -0.117 4.117 19 C -0.057 4.057 20 H 0.133 0.867 21 C 0.002 3.998 22 C -0.218 4.218 23 C -0.229 4.229 24 C -0.036 4.036 25 O -0.184 6.184 26 H 0.009 0.991 27 H 0.031 0.969 28 H 0.018 0.982 29 H 0.249 0.751 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.038 0.962 33 H 0.045 0.955 34 H 0.417 0.583 35 H 0.110 0.890 36 H 0.131 0.869 37 H 0.149 0.851 38 H 0.167 0.833 39 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.535 -23.028 6.977 27.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.342 5.342 3 C -0.394 4.394 4 H 0.090 0.910 5 C -0.250 4.250 6 N -0.584 5.584 7 Si 0.796 3.204 8 H -0.193 1.193 9 H -0.216 1.216 10 H -0.219 1.219 11 C 0.020 3.980 12 C -0.013 4.013 13 N -0.357 5.357 14 C 0.324 3.676 15 O -0.469 6.469 16 C -0.192 4.192 17 H 0.165 0.835 18 C -0.154 4.154 19 C -0.075 4.075 20 H 0.151 0.849 21 C -0.048 4.048 22 C -0.238 4.238 23 C -0.247 4.247 24 C -0.102 4.102 25 O -0.080 6.080 26 H 0.027 0.973 27 H 0.049 0.951 28 H 0.036 0.964 29 H 0.058 0.942 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.254 0.746 35 H 0.128 0.872 36 H 0.149 0.851 37 H 0.167 0.833 38 H 0.185 0.815 39 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 12.014 -22.630 7.400 26.669 hybrid contribution 0.367 1.398 0.045 1.446 sum 12.381 -21.232 7.445 25.682 Atomic orbital electron populations 1.20600 0.82359 0.96085 0.97926 1.44087 1.02401 1.01621 1.86085 1.19567 0.95937 0.85911 1.37953 0.90962 1.25689 0.98369 1.01525 0.99370 1.70261 1.18683 1.26870 1.42635 0.85202 0.77933 0.80079 0.77218 1.19323 1.21592 1.21914 1.20953 0.96918 0.87567 0.92556 1.21899 0.94860 0.83986 1.00506 1.45768 1.57228 1.23681 1.08995 1.20100 0.78531 0.85713 0.83255 1.90689 1.56751 1.66178 1.33296 1.22325 1.04497 0.92146 1.00263 0.83470 1.23182 0.97212 0.95361 0.99660 1.20384 0.90636 1.00851 0.95639 0.84918 1.21314 0.96842 0.89970 0.96634 1.21863 0.94619 1.03477 1.03801 1.22167 1.02129 0.97765 1.02689 1.24828 0.83442 1.02561 0.99408 1.83958 1.31784 1.38196 1.54088 0.97273 0.95082 0.96365 0.94186 0.91422 0.92187 0.94386 0.93613 0.74573 0.87152 0.85056 0.83308 0.81503 0.74231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.70 8.97 127.77 1.15 9.84 16 2 N -0.62 -30.83 2.93 -726.94 -2.13 -32.96 16 3 C -0.26 -14.53 9.69 84.03 0.81 -13.71 16 4 H 0.07 3.88 7.87 -2.91 -0.02 3.86 16 5 C -0.05 -3.09 5.07 84.86 0.43 -2.66 16 6 N -0.94 -55.64 10.54 21.65 0.23 -55.41 16 7 Si 0.97 45.66 29.58 68.60 2.03 47.69 16 8 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 9 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 10 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 11 C 0.15 5.55 5.76 86.38 0.50 6.04 16 12 C 0.11 4.10 6.00 86.38 0.52 4.62 16 13 N -0.71 -19.08 5.56 -463.06 -2.57 -21.65 16 14 C 0.54 15.41 7.61 87.66 0.67 16.08 16 15 O -0.59 -22.40 16.26 -3.03 -0.05 -22.45 16 16 C -0.17 -3.43 5.89 -11.54 -0.07 -3.50 16 17 H 0.15 2.34 8.14 -2.39 -0.02 2.32 16 18 C -0.12 -1.92 9.87 30.60 0.30 -1.62 16 19 C -0.06 -1.16 5.75 -11.54 -0.07 -1.23 16 20 H 0.13 3.10 7.67 -2.39 -0.02 3.08 16 21 C 0.00 0.04 6.80 24.83 0.17 0.21 16 22 C -0.22 -4.33 10.81 22.19 0.24 -4.09 16 23 C -0.23 -3.52 10.91 22.19 0.24 -3.27 16 24 C -0.04 -0.46 12.09 66.97 0.81 0.34 16 25 O -0.18 -3.29 10.36 -2.48 -0.03 -3.31 16 26 H 0.01 0.48 7.47 -2.39 -0.02 0.46 16 27 H 0.03 1.30 8.03 -2.39 -0.02 1.28 16 28 H 0.02 0.97 7.05 -2.39 -0.02 0.96 16 29 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 30 H 0.07 2.23 8.07 -2.38 -0.02 2.21 16 31 H 0.06 2.18 8.04 -2.39 -0.02 2.16 16 32 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.42 8.16 8.47 -92.71 -0.79 7.37 16 35 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.13 1.64 7.96 -2.39 -0.02 1.62 16 37 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 38 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 39 H 0.24 0.93 8.06 -2.91 -0.02 0.91 16 Total: -1.00 -72.40 337.47 3.45 -68.96 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.26 Total: 12.08 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 5.70 Total: 7.06 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -4.47 Total: -110.03 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.07 Total: -25.76 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -72.40 3.45 -68.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753064771.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.237 kcal (2) G-P(sol) polarization free energy of solvation -72.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds