Wall clock time and date at job start Tue Mar 31 2020 01:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36938 * 120.00007 * 2 1 4 4 H 1.08002 * 120.00088 * 154.65148 * 3 2 1 5 5 C 1.38818 * 119.99816 * 334.65585 * 3 2 1 6 6 N 1.31618 * 119.99903 * 4.04078 * 5 3 2 7 7 Si 1.86800 * 119.99547 * 184.03812 * 5 3 2 8 8 H 1.48493 * 109.47192 * 60.00281 * 7 5 3 9 9 H 1.48503 * 109.46739 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47316 * 299.99485 * 7 5 3 11 11 C 1.46502 * 120.00106 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47052 * 89.99980 * 11 2 1 13 13 H 1.09010 * 110.88783 * 54.30013 * 12 11 2 14 14 C 1.55157 * 111.00633 * 178.17645 * 12 11 2 15 15 C 1.54377 * 102.91910 * 153.54515 * 14 12 11 16 16 N 1.47020 * 107.28920 * 337.86629 * 15 14 12 17 17 C 1.34778 * 125.64414 * 178.87054 * 16 15 14 18 18 O 1.21698 * 119.99784 * 180.02562 * 17 16 15 19 19 C 1.46653 * 120.00441 * 0.03909 * 17 16 15 20 20 C 1.36542 * 125.99227 * 179.97438 * 19 17 16 21 21 C 1.40358 * 106.71044 * 179.97438 * 20 19 17 22 22 C 1.35128 * 107.11794 * 0.02562 * 21 20 19 23 23 O 1.33932 * 108.76594 * 359.75842 * 22 21 20 24 24 C 1.47421 * 108.70509 * 358.90839 * 16 15 14 25 25 H 1.09003 * 109.47265 * 84.48492 * 1 2 3 26 26 H 1.08998 * 109.47517 * 324.48047 * 1 2 3 27 27 H 1.08999 * 109.46767 * 204.48077 * 1 2 3 28 28 H 0.96996 * 119.99876 * 180.02562 * 6 5 3 29 29 H 1.08998 * 109.47204 * 210.00155 * 11 2 1 30 30 H 1.08998 * 109.47314 * 330.00181 * 11 2 1 31 31 H 1.08995 * 110.72561 * 271.94216 * 14 12 11 32 32 H 1.09000 * 110.71425 * 35.21896 * 14 12 11 33 33 H 1.09002 * 109.89963 * 218.42586 * 15 14 12 34 34 H 1.09002 * 109.97053 * 97.34822 * 15 14 12 35 35 H 1.08000 * 126.64038 * 359.96525 * 20 19 17 36 36 H 1.08002 * 126.44529 * 180.02562 * 21 20 19 37 37 H 1.07997 * 125.62349 * 180.02562 * 22 21 20 38 38 H 1.09007 * 110.36178 * 265.29030 * 24 16 15 39 39 H 1.08994 * 110.46482 * 143.01277 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1517 1.2310 0.4004 5 6 1.5558 2.3302 -0.5146 6 7 0.3072 2.2940 -0.9293 7 14 2.5288 3.9214 -0.6184 8 1 3.7208 3.7174 -1.4801 9 1 1.6737 4.9874 -1.1997 10 1 2.9648 4.3247 0.7426 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4417 13 1 2.9534 -0.9247 -2.0066 14 6 3.2676 -3.0306 -1.4830 15 6 2.8475 -3.6538 -2.8314 16 7 1.5493 -3.0689 -3.1975 17 6 0.8548 -3.3391 -4.3205 18 8 -0.2143 -2.7932 -4.5209 19 6 1.3871 -4.2910 -5.3009 20 6 0.7892 -4.6539 -6.4735 21 6 1.6435 -5.5798 -7.0925 22 6 2.7117 -5.7399 -6.2806 23 8 2.5560 -4.9581 -5.2044 24 6 1.1335 -2.1373 -2.1333 25 1 -0.3634 0.0988 -1.0229 26 1 -0.3634 0.8364 0.5970 27 1 -0.3633 -0.9353 0.4259 28 1 -0.1077 3.0935 -1.2892 29 1 3.1499 -1.1382 0.5144 30 1 1.6085 -2.0282 0.5147 31 1 4.3377 -2.8236 -1.4697 32 1 2.9894 -3.6817 -0.6543 33 1 2.7510 -4.7345 -2.7267 34 1 3.5883 -3.4204 -3.5963 35 1 -0.1577 -4.2976 -6.8515 36 1 1.4782 -6.0717 -8.0397 37 1 3.5544 -6.3881 -6.4703 38 1 0.4783 -2.6413 -1.4227 39 1 0.6319 -1.2694 -2.5612 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753347358.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:46 Heat of formation + Delta-G solvation = 12.656515 kcal Electronic energy + Delta-G solvation = -21842.592708 eV Core-core repulsion = 18560.097283 eV Total energy + Delta-G solvation = -3282.495425 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.77950 -39.63728 -37.51060 -35.33047 -33.25201 -32.29702 -30.74262 -29.90050 -28.61601 -26.30238 -25.48892 -23.72028 -22.00065 -21.86480 -21.06487 -19.82850 -19.65630 -17.73861 -16.64676 -16.58543 -16.46127 -15.83712 -15.20628 -14.71834 -14.28917 -13.65303 -13.52055 -13.38240 -13.16337 -12.96978 -12.87658 -12.55799 -12.41038 -12.25903 -11.72611 -11.41704 -10.96170 -10.77513 -10.68146 -10.46043 -10.22340 -10.19056 -10.11584 -10.04497 -9.87774 -9.75750 -8.88961 -8.47131 -8.40407 -6.70863 -5.69461 -3.16563 1.01308 2.22409 2.59055 3.19487 3.26073 3.40623 3.46133 3.46944 4.44167 4.52098 4.75568 4.79873 4.87313 5.07259 5.18574 5.44103 5.48414 5.55738 5.61870 5.63675 5.77285 5.79830 6.01838 6.02609 6.14934 6.17306 6.23009 6.32903 6.48997 6.55896 6.71094 6.78504 6.86283 6.98739 7.53685 7.61783 7.80579 7.91370 8.16643 8.46187 9.29592 9.90765 10.40537 11.35022 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025544 B = 0.004152 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.900273 B = 6741.540508 C = 6979.502442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.605 5.605 3 C -0.258 4.258 4 H 0.068 0.932 5 C 0.007 3.993 6 N -0.907 5.907 7 Si 0.902 3.098 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.284 1.284 11 C 0.165 3.835 12 C -0.117 4.117 13 H 0.086 0.914 14 C -0.129 4.129 15 C 0.104 3.896 16 N -0.607 5.607 17 C 0.607 3.393 18 O -0.520 6.520 19 C -0.064 4.064 20 C -0.129 4.129 21 C -0.224 4.224 22 C -0.017 4.017 23 O -0.160 6.160 24 C 0.120 3.880 25 H 0.027 0.973 26 H 0.052 0.948 27 H -0.010 1.010 28 H 0.253 0.747 29 H 0.050 0.950 30 H 0.039 0.961 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.159 0.841 36 H 0.155 0.845 37 H 0.208 0.792 38 H 0.065 0.935 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.159 -17.413 -7.635 19.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.327 5.327 3 C -0.388 4.388 4 H 0.085 0.915 5 C -0.191 4.191 6 N -0.551 5.551 7 Si 0.732 3.268 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.211 1.211 11 C 0.036 3.964 12 C -0.139 4.139 13 H 0.104 0.896 14 C -0.168 4.168 15 C -0.019 4.019 16 N -0.339 5.339 17 C 0.395 3.605 18 O -0.398 6.398 19 C -0.116 4.116 20 C -0.150 4.150 21 C -0.244 4.244 22 C -0.087 4.087 23 O -0.055 6.055 24 C 0.000 4.000 25 H 0.045 0.955 26 H 0.070 0.930 27 H 0.009 0.991 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.177 0.823 36 H 0.172 0.828 37 H 0.225 0.775 38 H 0.083 0.917 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.596 -16.918 -7.570 19.361 hybrid contribution 0.504 0.751 -0.601 1.086 sum 6.100 -16.167 -8.172 19.115 Atomic orbital electron populations 1.20914 0.82284 0.95264 0.99447 1.43939 1.02007 1.00550 1.86218 1.19145 0.99234 0.86410 1.33990 0.91460 1.25155 0.96500 0.98691 0.98746 1.70069 1.11164 1.28058 1.45844 0.86382 0.79349 0.83288 0.77793 1.21027 1.21636 1.21059 1.20768 0.96056 0.88346 0.91213 1.23258 0.93755 0.95357 1.01567 0.89585 1.22727 1.00806 0.97840 0.95405 1.22078 0.84653 0.97487 0.97665 1.48539 1.21500 1.43962 1.19909 1.16198 0.83961 0.80702 0.79633 1.90908 1.21177 1.51464 1.76267 1.22215 0.87634 1.01981 0.99753 1.21964 1.01447 0.98091 0.93463 1.21834 0.96023 1.03617 1.02877 1.24390 1.01219 0.96843 0.86287 1.84172 1.35449 1.45477 1.40368 1.22405 0.97748 0.92213 0.87680 0.95499 0.92967 0.99148 0.93643 0.93210 0.94232 0.90228 0.90753 0.91620 0.91456 0.82291 0.82767 0.77549 0.91687 0.89392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.12 8.25 59.85 0.49 4.61 16 2 N -0.60 -14.92 2.88 -181.12 -0.52 -15.44 16 3 C -0.26 -7.01 9.67 -15.06 -0.15 -7.15 16 4 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 5 C 0.01 0.21 5.38 -17.43 -0.09 0.11 16 6 N -0.91 -26.56 10.12 55.49 0.56 -26.00 16 7 Si 0.90 21.90 29.56 -169.99 -5.02 16.88 16 8 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 9 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 C 0.16 3.19 5.21 -4.04 -0.02 3.17 16 12 C -0.12 -2.06 3.27 -88.47 -0.29 -2.35 16 13 H 0.09 1.75 8.14 -51.92 -0.42 1.32 16 14 C -0.13 -1.68 6.43 -24.87 -0.16 -1.84 16 15 C 0.10 1.38 5.55 -3.04 -0.02 1.36 16 16 N -0.61 -10.23 3.33 -172.04 -0.57 -10.81 16 17 C 0.61 10.85 7.82 -12.86 -0.10 10.75 16 18 O -0.52 -11.05 17.12 5.19 0.09 -10.96 16 19 C -0.06 -0.93 6.95 -36.80 -0.26 -1.18 16 20 C -0.13 -1.63 10.62 -39.40 -0.42 -2.05 16 21 C -0.22 -2.12 10.87 -39.89 -0.43 -2.55 16 22 C -0.02 -0.15 12.08 29.63 0.36 0.21 16 23 O -0.16 -1.92 8.27 4.97 0.04 -1.88 16 24 C 0.12 2.26 5.58 -2.53 -0.01 2.24 16 25 H 0.03 0.73 7.01 -51.93 -0.36 0.36 16 26 H 0.05 1.42 7.03 -51.93 -0.37 1.05 16 27 H -0.01 -0.22 7.83 -51.93 -0.41 -0.63 16 28 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.05 0.93 8.04 -51.93 -0.42 0.51 16 30 H 0.04 0.70 7.75 -51.93 -0.40 0.30 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.87 8.04 -51.93 -0.42 0.45 16 33 H 0.07 0.77 7.80 -51.93 -0.40 0.37 16 34 H 0.07 0.85 7.66 -51.93 -0.40 0.46 16 35 H 0.16 1.92 8.06 -52.49 -0.42 1.50 16 36 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.21 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.06 1.19 7.96 -51.92 -0.41 0.78 16 39 H 0.09 1.99 7.61 -51.93 -0.40 1.60 16 LS Contribution 323.60 15.07 4.88 4.88 Total: -1.00 -32.39 323.60 -7.29 -39.68 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -5.64 Total: -1.68 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -1.10 Total: 5.33 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: -0.53 Total: -52.24 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.13 Total: -12.83 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.39 -7.29 -39.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753347358.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.332 kcal (2) G-P(sol) polarization free energy of solvation -32.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds