Wall clock time and date at job start Tue Mar 31 2020 01:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36938 * 120.00007 * 2 1 4 4 H 1.08002 * 120.00088 * 154.65148 * 3 2 1 5 5 C 1.38818 * 119.99816 * 334.65585 * 3 2 1 6 6 N 1.31618 * 119.99903 * 4.04078 * 5 3 2 7 7 Si 1.86800 * 119.99547 * 184.03812 * 5 3 2 8 8 H 1.48493 * 109.47192 * 60.00281 * 7 5 3 9 9 H 1.48503 * 109.46739 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47316 * 299.99485 * 7 5 3 11 11 C 1.46502 * 120.00106 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47052 * 89.99980 * 11 2 1 13 13 H 1.09010 * 110.88783 * 54.30013 * 12 11 2 14 14 C 1.55157 * 111.00633 * 178.17645 * 12 11 2 15 15 C 1.54377 * 102.91910 * 153.54515 * 14 12 11 16 16 N 1.47020 * 107.28920 * 337.86629 * 15 14 12 17 17 C 1.34778 * 125.64414 * 178.87054 * 16 15 14 18 18 O 1.21698 * 119.99784 * 180.02562 * 17 16 15 19 19 C 1.46653 * 120.00441 * 0.03909 * 17 16 15 20 20 C 1.36542 * 125.99227 * 179.97438 * 19 17 16 21 21 C 1.40358 * 106.71044 * 179.97438 * 20 19 17 22 22 C 1.35128 * 107.11794 * 0.02562 * 21 20 19 23 23 O 1.33932 * 108.76594 * 359.75842 * 22 21 20 24 24 C 1.47421 * 108.70509 * 358.90839 * 16 15 14 25 25 H 1.09003 * 109.47265 * 84.48492 * 1 2 3 26 26 H 1.08998 * 109.47517 * 324.48047 * 1 2 3 27 27 H 1.08999 * 109.46767 * 204.48077 * 1 2 3 28 28 H 0.96996 * 119.99876 * 180.02562 * 6 5 3 29 29 H 1.08998 * 109.47204 * 210.00155 * 11 2 1 30 30 H 1.08998 * 109.47314 * 330.00181 * 11 2 1 31 31 H 1.08995 * 110.72561 * 271.94216 * 14 12 11 32 32 H 1.09000 * 110.71425 * 35.21896 * 14 12 11 33 33 H 1.09002 * 109.89963 * 218.42586 * 15 14 12 34 34 H 1.09002 * 109.97053 * 97.34822 * 15 14 12 35 35 H 1.08000 * 126.64038 * 359.96525 * 20 19 17 36 36 H 1.08002 * 126.44529 * 180.02562 * 21 20 19 37 37 H 1.07997 * 125.62349 * 180.02562 * 22 21 20 38 38 H 1.09007 * 110.36178 * 265.29030 * 24 16 15 39 39 H 1.08994 * 110.46482 * 143.01277 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1517 1.2310 0.4004 5 6 1.5558 2.3302 -0.5146 6 7 0.3072 2.2940 -0.9293 7 14 2.5288 3.9214 -0.6184 8 1 3.7208 3.7174 -1.4801 9 1 1.6737 4.9874 -1.1997 10 1 2.9648 4.3247 0.7426 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4417 13 1 2.9534 -0.9247 -2.0066 14 6 3.2676 -3.0306 -1.4830 15 6 2.8475 -3.6538 -2.8314 16 7 1.5493 -3.0689 -3.1975 17 6 0.8548 -3.3391 -4.3205 18 8 -0.2143 -2.7932 -4.5209 19 6 1.3871 -4.2910 -5.3009 20 6 0.7892 -4.6539 -6.4735 21 6 1.6435 -5.5798 -7.0925 22 6 2.7117 -5.7399 -6.2806 23 8 2.5560 -4.9581 -5.2044 24 6 1.1335 -2.1373 -2.1333 25 1 -0.3634 0.0988 -1.0229 26 1 -0.3634 0.8364 0.5970 27 1 -0.3633 -0.9353 0.4259 28 1 -0.1077 3.0935 -1.2892 29 1 3.1499 -1.1382 0.5144 30 1 1.6085 -2.0282 0.5147 31 1 4.3377 -2.8236 -1.4697 32 1 2.9894 -3.6817 -0.6543 33 1 2.7510 -4.7345 -2.7267 34 1 3.5883 -3.4204 -3.5963 35 1 -0.1577 -4.2976 -6.8515 36 1 1.4782 -6.0717 -8.0397 37 1 3.5544 -6.3881 -6.4703 38 1 0.4783 -2.6413 -1.4227 39 1 0.6319 -1.2694 -2.5612 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753347358.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:44 Heat of formation + Delta-G solvation = -8.407395 kcal Electronic energy + Delta-G solvation = -21843.506107 eV Core-core repulsion = 18560.097283 eV Total energy + Delta-G solvation = -3283.408825 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -43.65647 -40.97334 -38.95851 -37.13807 -34.21746 -33.87621 -32.45020 -30.91597 -29.98924 -28.15228 -27.27794 -25.08557 -23.11451 -22.88091 -22.60800 -21.19979 -20.85329 -18.87822 -18.68595 -17.65366 -17.56130 -17.07705 -16.73258 -16.30123 -15.70816 -15.41371 -15.02612 -14.59234 -14.45672 -14.12993 -14.04295 -13.91502 -13.75406 -13.57303 -13.13627 -13.11076 -12.78219 -12.57804 -12.44020 -12.13013 -12.02062 -11.78759 -11.60861 -11.52447 -11.38810 -11.06121 -10.58797 -9.96264 -9.56863 -8.74102 -7.81583 -5.29638 0.00146 1.42041 1.45733 1.48265 1.54478 1.56104 2.03562 2.08591 2.51374 3.31755 3.43170 3.66998 3.72810 3.90779 3.94666 4.08758 4.12416 4.27386 4.47102 4.58327 4.67148 4.69439 4.84298 4.85521 4.86977 4.92358 4.94400 5.01458 5.03803 5.21812 5.28920 5.41359 5.42463 5.49645 5.66261 5.81085 5.88023 6.34726 6.37401 6.84332 7.19029 7.91002 8.35353 9.22114 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025544 B = 0.004152 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.900273 B = 6741.540508 C = 6979.502442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.184 3.816 2 N -0.621 5.621 3 C -0.261 4.261 4 H 0.078 0.922 5 C -0.053 4.053 6 N -0.941 5.941 7 Si 0.966 3.034 8 H -0.277 1.277 9 H -0.300 1.300 10 H -0.273 1.273 11 C 0.162 3.838 12 C -0.110 4.110 13 H 0.053 0.947 14 C -0.112 4.112 15 C 0.104 3.896 16 N -0.611 5.611 17 C 0.598 3.402 18 O -0.576 6.576 19 C -0.103 4.103 20 C -0.128 4.128 21 C -0.233 4.233 22 C 0.013 3.987 23 O -0.163 6.163 24 C 0.127 3.873 25 H -0.007 1.007 26 H 0.021 0.979 27 H 0.021 0.979 28 H 0.244 0.756 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.153 0.847 36 H 0.186 0.814 37 H 0.261 0.739 38 H 0.067 0.933 39 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.388 -20.413 -7.932 23.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.345 5.345 3 C -0.391 4.391 4 H 0.096 0.904 5 C -0.248 4.248 6 N -0.588 5.588 7 Si 0.794 3.206 8 H -0.203 1.203 9 H -0.226 1.226 10 H -0.198 1.198 11 C 0.035 3.965 12 C -0.132 4.132 13 H 0.072 0.928 14 C -0.150 4.150 15 C -0.018 4.018 16 N -0.342 5.342 17 C 0.389 3.611 18 O -0.458 6.458 19 C -0.155 4.155 20 C -0.149 4.149 21 C -0.251 4.251 22 C -0.056 4.056 23 O -0.059 6.059 24 C 0.005 3.995 25 H 0.011 0.989 26 H 0.040 0.960 27 H 0.039 0.961 28 H 0.054 0.946 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.123 0.877 32 H 0.117 0.883 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.170 0.830 36 H 0.204 0.796 37 H 0.277 0.723 38 H 0.086 0.914 39 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 8.893 -19.965 -7.843 23.221 hybrid contribution -0.448 1.528 -0.569 1.690 sum 8.445 -18.438 -8.411 21.955 Atomic orbital electron populations 1.20549 0.83128 0.95396 0.97056 1.44178 1.01936 1.01980 1.86364 1.19560 0.99405 0.87413 1.32710 0.90444 1.25927 0.97367 1.02111 0.99366 1.70286 1.12767 1.28241 1.47544 0.85360 0.77831 0.79293 0.78101 1.20311 1.22644 1.19832 1.20983 0.96476 0.86553 0.92451 1.22960 0.93666 0.97101 0.99443 0.92807 1.22719 1.01391 0.94773 0.96091 1.22312 0.82819 0.98692 0.97945 1.48637 1.22731 1.43485 1.19319 1.16712 0.83479 0.80784 0.80131 1.90856 1.23587 1.53811 1.77578 1.21521 0.89805 1.04110 1.00049 1.22239 1.01522 0.98071 0.93062 1.22202 0.95498 1.03128 1.04283 1.25497 1.01618 0.94502 0.84007 1.84143 1.34160 1.45797 1.41778 1.22130 0.98234 0.90936 0.88181 0.98852 0.95972 0.96092 0.94631 0.91641 0.91989 0.87681 0.88338 0.89121 0.90590 0.82974 0.79643 0.72328 0.91433 0.94851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.54 8.25 127.77 1.05 10.59 16 2 N -0.62 -31.08 2.88 -726.93 -2.09 -33.17 16 3 C -0.26 -14.29 9.67 84.03 0.81 -13.47 16 4 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 5 C -0.05 -3.05 5.38 84.86 0.46 -2.59 16 6 N -0.94 -57.91 10.12 21.65 0.22 -57.69 16 7 Si 0.97 45.95 29.56 68.60 2.03 47.97 16 8 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 9 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 C 0.16 6.06 5.21 86.38 0.45 6.51 16 12 C -0.11 -3.81 3.27 -9.40 -0.03 -3.84 16 13 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 14 C -0.11 -2.52 6.43 31.80 0.20 -2.32 16 15 C 0.10 2.49 5.55 86.75 0.48 2.97 16 16 N -0.61 -20.88 3.33 -816.41 -2.72 -23.60 16 17 C 0.60 22.33 7.82 86.44 0.68 23.01 16 18 O -0.58 -26.51 17.12 -4.34 -0.07 -26.58 16 19 C -0.10 -2.96 6.95 24.07 0.17 -2.79 16 20 C -0.13 -3.14 10.62 22.39 0.24 -2.91 16 21 C -0.23 -3.58 10.87 22.07 0.24 -3.34 16 22 C 0.01 0.17 12.08 67.10 0.81 0.98 16 23 O -0.16 -3.44 8.27 -5.12 -0.04 -3.48 16 24 C 0.13 4.97 5.58 86.86 0.48 5.46 16 25 H -0.01 -0.40 7.01 -2.39 -0.02 -0.42 16 26 H 0.02 1.24 7.03 -2.39 -0.02 1.22 16 27 H 0.02 0.93 7.83 -2.39 -0.02 0.91 16 28 H 0.24 14.81 8.31 -92.71 -0.77 14.04 16 29 H 0.07 2.27 8.04 -2.39 -0.02 2.25 16 30 H 0.06 2.06 7.75 -2.39 -0.02 2.04 16 31 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.10 1.83 8.04 -2.39 -0.02 1.81 16 33 H 0.09 1.78 7.80 -2.39 -0.02 1.76 16 34 H 0.08 1.71 7.66 -2.39 -0.02 1.70 16 35 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 36 H 0.19 1.61 8.06 -2.91 -0.02 1.59 16 37 H 0.26 0.31 8.06 -2.91 -0.02 0.29 16 38 H 0.07 2.55 7.96 -2.38 -0.02 2.53 16 39 H 0.03 1.65 7.61 -2.39 -0.02 1.63 16 Total: -1.00 -77.05 323.60 4.40 -72.65 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: 1.03 Total: 5.65 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: 6.04 Total: 18.25 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -4.59 Total: -114.45 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -0.12 Total: -30.07 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal Total: -77.05 4.40 -72.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753347358.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.242 kcal (2) G-P(sol) polarization free energy of solvation -77.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds