Wall clock time and date at job start Tue Mar 31 2020 01:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34774 * 119.99894 * 2 1 4 4 O 1.21287 * 120.00261 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.00261 * 359.97438 * 3 2 1 6 6 C 1.52993 * 109.47498 * 179.97438 * 5 3 2 7 7 C 1.50697 * 109.47009 * 180.02562 * 6 5 3 8 8 C 1.34513 * 125.79105 * 90.00621 * 7 6 5 9 9 C 1.41377 * 106.84654 * 179.97438 * 8 7 6 10 10 C 1.34511 * 106.83816 * 359.97438 * 9 8 7 11 11 O 1.34301 * 108.42152 * 359.73567 * 10 9 8 12 12 C 1.46500 * 120.00200 * 179.97438 * 2 1 3 13 13 C 1.53495 * 114.20946 * 60.00112 * 12 2 1 14 14 N 1.47064 * 87.98647 * 220.14789 * 13 12 2 15 15 C 1.36929 * 136.05710 * 207.07951 * 14 13 12 16 16 H 1.08004 * 120.00104 * 6.50631 * 15 14 13 17 17 C 1.38818 * 120.00175 * 186.49548 * 15 14 13 18 18 N 1.31615 * 119.99847 * 6.43003 * 17 15 14 19 19 Si 1.86802 * 119.99925 * 186.42380 * 17 15 14 20 20 H 1.48502 * 109.46990 * 265.01960 * 19 17 15 21 21 H 1.48491 * 109.47236 * 25.02406 * 19 17 15 22 22 H 1.48506 * 109.46777 * 145.02360 * 19 17 15 23 23 C 1.47067 * 87.88549 * 27.33957 * 14 13 12 24 24 H 1.09001 * 109.46983 * 270.00218 * 1 2 3 25 25 H 1.08991 * 109.47247 * 30.00032 * 1 2 3 26 26 H 1.09001 * 109.46779 * 150.00246 * 1 2 3 27 27 H 1.08998 * 109.47115 * 300.00874 * 5 3 2 28 28 H 1.09009 * 109.46581 * 60.00040 * 5 3 2 29 29 H 1.08998 * 109.47692 * 300.00571 * 6 5 3 30 30 H 1.09006 * 109.46752 * 60.00769 * 6 5 3 31 31 H 1.08011 * 126.57709 * 359.96056 * 8 7 6 32 32 H 1.07998 * 126.58335 * 179.97438 * 9 8 7 33 33 H 1.08001 * 125.79167 * 179.97438 * 10 9 8 34 34 H 1.09008 * 113.28018 * 193.06976 * 12 2 1 35 35 H 1.08996 * 113.46596 * 105.36686 * 13 12 2 36 36 H 1.09007 * 113.51449 * 334.93936 * 13 12 2 37 37 H 0.97003 * 120.00226 * 179.97438 * 18 17 15 38 38 H 1.09005 * 113.46771 * 87.43754 * 23 14 13 39 39 H 1.09002 * 113.46911 * 217.87594 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3853 2.4723 -0.0006 6 6 2.3795 3.6352 0.0002 7 6 1.6259 4.9403 0.0002 8 6 1.2322 5.6213 1.0914 9 6 0.5642 6.7797 0.6324 10 6 0.5902 6.7376 -0.7118 11 8 1.2399 5.6245 -1.0891 12 6 2.1975 -1.2687 0.0006 13 6 1.9061 -2.1643 -1.2114 14 7 1.9170 -3.3163 -0.2973 15 6 2.1885 -4.6544 -0.4007 16 1 2.5786 -5.0566 -1.3241 17 6 1.9625 -5.4942 0.6813 18 7 1.3706 -5.0307 1.7616 19 14 2.4984 -7.2820 0.6040 20 1 1.3556 -8.1228 0.1654 21 1 3.6162 -7.4223 -0.3634 22 1 2.9494 -7.7222 1.9487 23 6 1.5016 -2.3999 0.7752 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 0.7589 2.5298 -0.8907 28 1 0.7583 2.5302 0.8893 29 1 3.0056 3.5776 0.8906 30 1 3.0067 3.5775 -0.8894 31 1 1.3949 5.3374 2.1207 32 1 0.1186 7.5505 1.2437 33 1 0.1644 7.4760 -1.3751 34 1 3.2576 -1.1540 0.2270 35 1 2.7146 -2.1824 -1.9422 36 1 0.9323 -1.9792 -1.6649 37 1 1.2124 -5.6176 2.5176 38 1 0.4209 -2.2763 0.8463 39 1 1.9655 -2.6187 1.7371 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754569160.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:46 Heat of formation + Delta-G solvation = 41.231376 kcal Electronic energy + Delta-G solvation = -21007.436403 eV Core-core repulsion = 17726.180077 eV Total energy + Delta-G solvation = -3281.256326 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.73508 -39.91727 -37.87393 -34.51767 -34.13476 -32.94894 -32.02997 -29.16583 -27.68492 -26.67647 -24.93596 -24.62707 -22.82764 -21.92895 -20.57351 -19.72830 -18.50750 -17.71807 -16.95332 -16.55180 -16.26640 -15.88323 -15.69663 -14.81954 -14.60250 -14.01707 -13.85158 -13.54284 -13.01007 -12.91684 -12.87292 -12.51477 -12.43154 -12.29943 -11.95570 -11.81783 -11.54715 -11.28517 -11.20257 -10.98217 -10.77326 -10.21411 -10.13553 -10.11325 -9.55436 -9.47827 -8.82780 -8.62935 -8.13228 -6.95264 -5.84303 -3.15671 1.53540 2.42182 2.79142 2.82855 3.28139 3.38002 3.42930 3.45061 4.39226 4.45516 4.75248 4.80490 4.85515 4.89960 5.05075 5.22528 5.28783 5.37791 5.44578 5.49171 5.53995 5.62914 5.72996 5.79557 5.84060 5.85996 5.99366 6.06031 6.14585 6.32193 6.43090 6.56063 6.75447 6.96564 7.10354 7.28555 7.44802 7.73094 7.90254 8.41019 8.97587 9.63892 10.56353 11.34554 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.056186 B = 0.002848 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.227744 B = 9829.639869 C = 9905.504254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.596 5.596 3 C 0.512 3.488 4 O -0.547 6.547 5 C -0.136 4.136 6 C -0.026 4.026 7 C -0.005 4.005 8 C -0.213 4.213 9 C -0.214 4.214 10 C -0.048 4.048 11 O -0.176 6.176 12 C 0.085 3.915 13 C 0.105 3.895 14 N -0.603 5.603 15 C -0.219 4.219 16 H 0.084 0.916 17 C -0.006 4.006 18 N -0.919 5.919 19 Si 0.915 3.085 20 H -0.288 1.288 21 H -0.279 1.279 22 H -0.289 1.289 23 C 0.156 3.844 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.148 0.852 32 H 0.146 0.854 33 H 0.201 0.799 34 H 0.119 0.881 35 H 0.043 0.957 36 H 0.033 0.967 37 H 0.255 0.745 38 H 0.035 0.965 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.482 21.672 -2.689 22.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.329 5.329 3 C 0.299 3.701 4 O -0.425 6.425 5 C -0.176 4.176 6 C -0.063 4.063 7 C -0.055 4.055 8 C -0.232 4.232 9 C -0.233 4.233 10 C -0.115 4.115 11 O -0.072 6.072 12 C -0.019 4.019 13 C -0.022 4.022 14 N -0.329 5.329 15 C -0.346 4.346 16 H 0.101 0.899 17 C -0.203 4.203 18 N -0.565 5.565 19 Si 0.745 3.255 20 H -0.215 1.215 21 H -0.204 1.204 22 H -0.215 1.215 23 C 0.029 3.971 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.113 0.887 28 H 0.115 0.885 29 H 0.121 0.879 30 H 0.108 0.892 31 H 0.166 0.834 32 H 0.164 0.836 33 H 0.217 0.783 34 H 0.137 0.863 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.052 0.948 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.759 21.185 -2.865 21.705 hybrid contribution -0.287 -0.811 0.231 0.891 sum -4.046 20.374 -2.634 20.938 Atomic orbital electron populations 1.21819 0.79810 1.03062 1.02085 1.47913 1.06919 1.06137 1.71881 1.20488 0.88003 0.85249 0.76333 1.90690 1.13928 1.87467 1.50408 1.21696 0.99153 0.91868 1.04851 1.19881 0.95654 0.84964 1.05814 1.22550 1.02370 0.96426 0.84124 1.21642 1.05143 0.96777 0.99637 1.21839 1.05828 1.00759 0.94847 1.24011 1.01192 0.90190 0.96140 1.84035 1.57497 1.30441 1.35231 1.23785 0.97924 0.80074 1.00144 1.22817 0.98140 0.87393 0.93857 1.45346 1.78776 1.03150 1.05615 1.18924 1.36336 0.80288 0.99095 0.89869 1.24852 1.00400 0.98330 0.96753 1.69847 1.45892 1.35193 1.05560 0.86058 0.78225 0.84163 0.77063 1.21547 1.20404 1.21503 1.22399 0.96259 0.84015 0.94439 0.92317 0.91543 0.90251 0.88656 0.88506 0.87933 0.89200 0.83412 0.83583 0.78271 0.86300 0.93851 0.94920 0.93522 0.94757 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.93 8.92 59.84 0.53 1.46 16 2 N -0.60 -9.39 3.11 -173.56 -0.54 -9.93 16 3 C 0.51 7.73 7.67 -10.99 -0.08 7.65 16 4 O -0.55 -10.22 15.49 5.55 0.09 -10.13 16 5 C -0.14 -1.44 4.23 -27.89 -0.12 -1.56 16 6 C -0.03 -0.27 5.04 -27.89 -0.14 -0.41 16 7 C 0.00 -0.05 6.58 -35.63 -0.23 -0.28 16 8 C -0.21 -2.09 10.81 -39.71 -0.43 -2.52 16 9 C -0.21 -1.85 10.91 -39.71 -0.43 -2.29 16 10 C -0.05 -0.40 12.09 29.41 0.36 -0.04 16 11 O -0.18 -1.91 10.65 5.71 0.06 -1.85 16 12 C 0.08 1.67 4.57 -67.68 -0.31 1.36 16 13 C 0.11 2.21 8.24 -8.51 -0.07 2.14 16 14 N -0.60 -15.60 3.76 -184.62 -0.69 -16.30 16 15 C -0.22 -6.18 10.73 -15.06 -0.16 -6.34 16 16 H 0.08 2.26 7.84 -52.48 -0.41 1.85 16 17 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 18 N -0.92 -27.19 11.81 55.49 0.66 -26.53 16 19 Si 0.92 22.07 29.56 -169.99 -5.02 17.05 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 C 0.16 3.62 6.65 -8.37 -0.06 3.56 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.61 6.44 -51.93 -0.33 0.28 16 26 H 0.08 1.07 6.18 -51.93 -0.32 0.75 16 27 H 0.10 0.89 7.40 -51.93 -0.38 0.51 16 28 H 0.10 0.88 8.11 -51.92 -0.42 0.46 16 29 H 0.10 1.09 8.10 -51.93 -0.42 0.67 16 30 H 0.09 1.02 8.10 -51.93 -0.42 0.60 16 31 H 0.15 1.24 8.06 -52.48 -0.42 0.81 16 32 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.20 0.91 8.06 -52.49 -0.42 0.48 16 34 H 0.12 2.56 7.29 -51.92 -0.38 2.18 16 35 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.03 0.65 6.97 -51.93 -0.36 0.29 16 37 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.03 0.79 6.57 -51.93 -0.34 0.45 16 39 H 0.06 1.66 7.57 -51.93 -0.39 1.27 16 LS Contribution 326.98 15.07 4.93 4.93 Total: -1.00 -33.56 326.98 -7.21 -40.77 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -5.44 Total: -0.46 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -1.24 Total: 2.46 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -0.58 Total: -52.76 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.15 Total: -11.98 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.56 -7.21 -40.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754569160.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.998 kcal (2) G-P(sol) polarization free energy of solvation -33.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds