Wall clock time and date at job start Tue Mar 31 2020 01:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34774 * 119.99894 * 2 1 4 4 O 1.21287 * 120.00261 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.00261 * 359.97438 * 3 2 1 6 6 C 1.52993 * 109.47498 * 179.97438 * 5 3 2 7 7 C 1.50697 * 109.47009 * 180.02562 * 6 5 3 8 8 C 1.34513 * 125.79105 * 90.00621 * 7 6 5 9 9 C 1.41377 * 106.84654 * 179.97438 * 8 7 6 10 10 C 1.34511 * 106.83816 * 359.97438 * 9 8 7 11 11 O 1.34301 * 108.42152 * 359.73567 * 10 9 8 12 12 C 1.46500 * 120.00200 * 179.97438 * 2 1 3 13 13 C 1.53495 * 114.20946 * 60.00112 * 12 2 1 14 14 N 1.47064 * 87.98647 * 220.14789 * 13 12 2 15 15 C 1.36929 * 136.05710 * 207.07951 * 14 13 12 16 16 H 1.08004 * 120.00104 * 6.50631 * 15 14 13 17 17 C 1.38818 * 120.00175 * 186.49548 * 15 14 13 18 18 N 1.31615 * 119.99847 * 6.43003 * 17 15 14 19 19 Si 1.86802 * 119.99925 * 186.42380 * 17 15 14 20 20 H 1.48502 * 109.46990 * 265.01960 * 19 17 15 21 21 H 1.48491 * 109.47236 * 25.02406 * 19 17 15 22 22 H 1.48506 * 109.46777 * 145.02360 * 19 17 15 23 23 C 1.47067 * 87.88549 * 27.33957 * 14 13 12 24 24 H 1.09001 * 109.46983 * 270.00218 * 1 2 3 25 25 H 1.08991 * 109.47247 * 30.00032 * 1 2 3 26 26 H 1.09001 * 109.46779 * 150.00246 * 1 2 3 27 27 H 1.08998 * 109.47115 * 300.00874 * 5 3 2 28 28 H 1.09009 * 109.46581 * 60.00040 * 5 3 2 29 29 H 1.08998 * 109.47692 * 300.00571 * 6 5 3 30 30 H 1.09006 * 109.46752 * 60.00769 * 6 5 3 31 31 H 1.08011 * 126.57709 * 359.96056 * 8 7 6 32 32 H 1.07998 * 126.58335 * 179.97438 * 9 8 7 33 33 H 1.08001 * 125.79167 * 179.97438 * 10 9 8 34 34 H 1.09008 * 113.28018 * 193.06976 * 12 2 1 35 35 H 1.08996 * 113.46596 * 105.36686 * 13 12 2 36 36 H 1.09007 * 113.51449 * 334.93936 * 13 12 2 37 37 H 0.97003 * 120.00226 * 179.97438 * 18 17 15 38 38 H 1.09005 * 113.46771 * 87.43754 * 23 14 13 39 39 H 1.09002 * 113.46911 * 217.87594 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3853 2.4723 -0.0006 6 6 2.3795 3.6352 0.0002 7 6 1.6259 4.9403 0.0002 8 6 1.2322 5.6213 1.0914 9 6 0.5642 6.7797 0.6324 10 6 0.5902 6.7376 -0.7118 11 8 1.2399 5.6245 -1.0891 12 6 2.1975 -1.2687 0.0006 13 6 1.9061 -2.1643 -1.2114 14 7 1.9170 -3.3163 -0.2973 15 6 2.1885 -4.6544 -0.4007 16 1 2.5786 -5.0566 -1.3241 17 6 1.9625 -5.4942 0.6813 18 7 1.3706 -5.0307 1.7616 19 14 2.4984 -7.2820 0.6040 20 1 1.3556 -8.1228 0.1654 21 1 3.6162 -7.4223 -0.3634 22 1 2.9494 -7.7222 1.9487 23 6 1.5016 -2.3999 0.7752 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 0.7589 2.5298 -0.8907 28 1 0.7583 2.5302 0.8893 29 1 3.0056 3.5776 0.8906 30 1 3.0067 3.5775 -0.8894 31 1 1.3949 5.3374 2.1207 32 1 0.1186 7.5505 1.2437 33 1 0.1644 7.4760 -1.3751 34 1 3.2576 -1.1540 0.2270 35 1 2.7146 -2.1824 -1.9422 36 1 0.9323 -1.9792 -1.6649 37 1 1.2124 -5.6176 2.5176 38 1 0.4209 -2.2763 0.8463 39 1 1.9655 -2.6187 1.7371 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754569160.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:46 Heat of formation + Delta-G solvation = 19.779486 kcal Electronic energy + Delta-G solvation = -21008.366626 eV Core-core repulsion = 17726.180077 eV Total energy + Delta-G solvation = -3282.186550 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.42931 -41.30318 -39.47660 -35.94495 -35.04519 -34.06125 -33.61858 -30.24691 -29.28843 -27.88012 -26.44678 -26.10272 -24.42237 -22.60523 -21.53104 -21.05907 -19.88982 -18.89592 -18.49377 -17.73886 -17.38819 -17.00057 -16.82503 -16.65315 -15.83184 -15.39640 -15.16881 -14.75646 -14.37127 -13.88532 -13.71806 -13.67304 -13.47544 -13.35911 -13.30383 -13.11886 -13.07855 -12.86406 -12.82772 -12.62758 -12.12194 -12.03781 -11.96777 -11.39764 -10.89488 -10.86470 -10.76823 -9.53269 -9.32685 -8.99872 -7.98181 -5.30977 0.83889 1.44858 1.47228 1.56773 1.62393 1.74469 1.95014 2.21935 2.47719 3.25594 3.43341 3.54373 3.74588 3.92635 4.04008 4.09880 4.21606 4.24714 4.33446 4.37736 4.45124 4.61285 4.68624 4.72066 4.80665 4.84811 4.97967 5.00432 5.03350 5.12524 5.12952 5.21626 5.30766 5.40370 5.67253 5.68216 5.84142 6.28003 6.48310 6.84553 7.18209 7.52757 8.52184 9.20982 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.056186 B = 0.002848 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.227744 B = 9829.639869 C = 9905.504254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.598 5.598 3 C 0.510 3.490 4 O -0.588 6.588 5 C -0.121 4.121 6 C -0.020 4.020 7 C -0.024 4.024 8 C -0.218 4.218 9 C -0.227 4.227 10 C -0.045 4.045 11 O -0.194 6.194 12 C 0.111 3.889 13 C 0.111 3.889 14 N -0.636 5.636 15 C -0.234 4.234 16 H 0.087 0.913 17 C -0.064 4.064 18 N -0.951 5.951 19 Si 0.984 3.016 20 H -0.283 1.283 21 H -0.268 1.268 22 H -0.293 1.293 23 C 0.161 3.839 24 H 0.068 0.932 25 H 0.107 0.893 26 H 0.067 0.933 27 H 0.117 0.883 28 H 0.120 0.880 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.157 0.843 32 H 0.167 0.833 33 H 0.235 0.765 34 H 0.097 0.903 35 H 0.046 0.954 36 H 0.055 0.945 37 H 0.251 0.749 38 H 0.041 0.959 39 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.776 23.303 -3.508 24.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.330 5.330 3 C 0.300 3.700 4 O -0.468 6.468 5 C -0.160 4.160 6 C -0.058 4.058 7 C -0.074 4.074 8 C -0.237 4.237 9 C -0.246 4.246 10 C -0.112 4.112 11 O -0.090 6.090 12 C 0.006 3.994 13 C -0.015 4.015 14 N -0.363 5.363 15 C -0.362 4.362 16 H 0.105 0.895 17 C -0.258 4.258 18 N -0.599 5.599 19 Si 0.811 3.189 20 H -0.209 1.209 21 H -0.192 1.192 22 H -0.219 1.219 23 C 0.034 3.966 24 H 0.087 0.913 25 H 0.125 0.875 26 H 0.086 0.914 27 H 0.135 0.865 28 H 0.138 0.862 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.175 0.825 32 H 0.184 0.816 33 H 0.251 0.749 34 H 0.115 0.885 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -5.076 22.856 -3.709 23.705 hybrid contribution 0.099 -1.184 0.465 1.276 sum -4.977 21.673 -3.244 22.472 Atomic orbital electron populations 1.22061 0.77301 1.04481 1.03238 1.47916 1.08326 1.04780 1.71958 1.21287 0.87710 0.86216 0.74805 1.90677 1.16049 1.88064 1.52054 1.21674 0.98826 0.88608 1.06906 1.19744 0.95558 0.85487 1.05010 1.22444 1.03657 0.96766 0.84489 1.21926 1.04686 0.97078 0.99975 1.22173 1.06039 1.00988 0.95393 1.24776 0.99823 0.89655 0.96899 1.84023 1.58072 1.31339 1.35609 1.23026 0.96785 0.81511 0.98119 1.22900 0.99161 0.85663 0.93807 1.45657 1.79195 1.03480 1.07920 1.19311 1.35834 0.81732 0.99286 0.89523 1.25722 1.00942 1.02614 0.96500 1.70015 1.47352 1.36447 1.06126 0.84992 0.78069 0.78989 0.76842 1.20929 1.19236 1.21904 1.22311 0.96423 0.85161 0.92679 0.91348 0.87482 0.91437 0.86478 0.86167 0.88463 0.90468 0.82507 0.81574 0.74882 0.88479 0.93607 0.92698 0.94006 0.94157 0.95538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.56 8.92 127.77 1.14 2.70 16 2 N -0.60 -18.08 3.11 -821.41 -2.56 -20.64 16 3 C 0.51 14.79 7.67 87.66 0.67 15.46 16 4 O -0.59 -22.07 15.49 -3.05 -0.05 -22.12 16 5 C -0.12 -2.26 4.23 29.85 0.13 -2.14 16 6 C -0.02 -0.41 5.04 29.84 0.15 -0.26 16 7 C -0.02 -0.47 6.58 24.83 0.16 -0.30 16 8 C -0.22 -3.83 10.81 22.19 0.24 -3.59 16 9 C -0.23 -3.34 10.91 22.19 0.24 -3.10 16 10 C -0.04 -0.62 12.09 66.97 0.81 0.19 16 11 O -0.19 -3.81 10.65 -2.48 -0.03 -3.84 16 12 C 0.11 4.43 4.57 45.55 0.21 4.63 16 13 C 0.11 4.63 8.24 83.18 0.69 5.32 16 14 N -0.64 -33.40 3.76 -738.02 -2.78 -36.18 16 15 C -0.23 -13.33 10.73 84.04 0.90 -12.43 16 16 H 0.09 4.72 7.84 -2.91 -0.02 4.69 16 17 C -0.06 -3.69 5.50 84.86 0.47 -3.23 16 18 N -0.95 -57.64 11.81 21.65 0.26 -57.38 16 19 Si 0.98 45.86 29.56 68.60 2.03 47.89 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 22 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 23 C 0.16 7.66 6.65 83.27 0.55 8.21 16 24 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.11 1.51 6.44 -2.39 -0.02 1.49 16 26 H 0.07 1.68 6.18 -2.39 -0.01 1.67 16 27 H 0.12 1.75 7.40 -2.39 -0.02 1.74 16 28 H 0.12 1.76 8.11 -2.38 -0.02 1.75 16 29 H 0.10 2.03 8.10 -2.39 -0.02 2.01 16 30 H 0.08 1.73 8.10 -2.38 -0.02 1.72 16 31 H 0.16 2.33 8.06 -2.90 -0.02 2.31 16 32 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 33 H 0.24 1.27 8.06 -2.91 -0.02 1.25 16 34 H 0.10 4.32 7.29 -2.38 -0.02 4.30 16 35 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.06 2.09 6.97 -2.38 -0.02 2.07 16 37 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 38 H 0.04 1.86 6.57 -2.38 -0.02 1.85 16 39 H 0.03 1.43 7.57 -2.39 -0.02 1.41 16 Total: -1.00 -74.28 326.98 4.28 -70.00 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 1.04 Total: 10.79 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 6.36 Total: 11.47 kcal Atomic # 7 Polarization: -109.12 SS G_CDS: -5.08 Total: -114.20 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.07 Total: -25.96 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -74.28 4.28 -70.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754569160.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.783 kcal (2) G-P(sol) polarization free energy of solvation -74.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds