Wall clock time and date at job start Mon Mar 30 2020 23:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36934 * 120.00191 * 2 1 4 4 H 1.07997 * 120.00089 * 200.27471 * 3 2 1 5 5 C 1.38813 * 120.00020 * 20.27539 * 3 2 1 6 6 N 1.31624 * 119.99999 * 15.01523 * 5 3 2 7 7 Si 1.86796 * 120.00241 * 195.01906 * 5 3 2 8 8 H 1.48500 * 109.47266 * 85.00247 * 7 5 3 9 9 H 1.48495 * 109.47482 * 205.00108 * 7 5 3 10 10 H 1.48503 * 109.47108 * 325.00195 * 7 5 3 11 11 C 1.46497 * 119.99758 * 180.02562 * 2 1 3 12 12 C 1.50708 * 109.46980 * 269.99845 * 11 2 1 13 13 O 1.21278 * 119.99903 * 0.02562 * 12 11 2 14 14 N 1.34776 * 119.99672 * 180.02562 * 12 11 2 15 15 C 1.46501 * 119.99634 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.47121 * 180.02562 * 15 14 12 17 17 O 1.42902 * 109.46848 * 65.00283 * 16 15 14 18 18 C 1.35906 * 116.99632 * 180.02562 * 17 16 15 19 19 C 1.38728 * 120.05089 * 179.97438 * 18 17 16 20 20 C 1.38145 * 119.94203 * 179.97438 * 19 18 17 21 21 C 1.38273 * 120.05680 * 0.02562 * 20 19 18 22 22 C 1.38268 * 120.10748 * 359.95537 * 21 20 19 23 23 C 1.38144 * 120.05528 * 0.04727 * 22 21 20 24 24 H 1.09005 * 109.47216 * 275.10343 * 1 2 3 25 25 H 1.09007 * 109.46960 * 35.10175 * 1 2 3 26 26 H 1.09001 * 109.46976 * 155.09914 * 1 2 3 27 27 H 0.96998 * 120.00256 * 179.97438 * 6 5 3 28 28 H 1.09006 * 109.47279 * 150.00395 * 11 2 1 29 29 H 1.08993 * 109.47516 * 29.99811 * 11 2 1 30 30 H 0.96998 * 120.00243 * 0.02562 * 14 12 11 31 31 H 1.09006 * 109.47224 * 60.00072 * 15 14 12 32 32 H 1.08998 * 109.47405 * 300.00088 * 15 14 12 33 33 H 1.09000 * 109.47161 * 304.99847 * 16 15 14 34 34 H 1.09001 * 109.46942 * 184.99835 * 16 15 14 35 35 H 1.08000 * 120.02963 * 359.70193 * 19 18 17 36 36 H 1.08001 * 119.97755 * 180.02562 * 20 19 18 37 37 H 1.08000 * 119.94397 * 179.97438 * 21 20 19 38 38 H 1.08000 * 119.97176 * 180.02562 * 22 21 20 39 39 H 1.08001 * 120.02522 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1795 1.2148 -0.3241 5 6 1.5202 2.3508 0.4166 6 7 0.3864 2.2844 1.0819 7 14 2.2820 4.0126 0.0330 8 1 1.8689 4.4446 -1.3264 9 1 1.8209 5.0109 1.0309 10 1 3.7620 3.9036 0.0893 11 6 2.1974 -1.2687 -0.0006 12 6 2.4486 -1.7044 1.4201 13 8 2.0542 -1.0225 2.3422 14 7 3.1116 -2.8518 1.6659 15 6 3.3552 -3.2756 3.0469 16 6 4.1214 -4.5999 3.0464 17 8 5.4172 -4.4002 2.4780 18 6 6.2315 -5.4857 2.4019 19 6 7.5030 -5.3638 1.8608 20 6 8.3290 -6.4685 1.7851 21 6 7.8891 -7.6951 2.2476 22 6 6.6224 -7.8191 2.7877 23 6 5.7926 -6.7173 2.8656 24 1 -0.3634 0.0914 1.0236 25 1 -0.3633 0.8408 -0.5910 26 1 -0.3633 -0.9321 -0.4327 27 1 -0.0533 3.0984 1.3733 28 1 3.1500 -1.1382 -0.5143 29 1 1.6084 -2.0281 -0.5147 30 1 3.4273 -3.3970 0.9284 31 1 2.4026 -3.4067 3.5602 32 1 3.9437 -2.5161 3.5616 33 1 3.5751 -5.3355 2.4560 34 1 4.2252 -4.9600 4.0699 35 1 7.8453 -4.4070 1.4950 36 1 9.3192 -6.3742 1.3643 37 1 8.5362 -8.5577 2.1871 38 1 6.2812 -8.7781 3.1486 39 1 4.8031 -6.8148 3.2872 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972796.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:50:06 Heat of formation + Delta-G solvation = -16.656592 kcal Electronic energy + Delta-G solvation = -20764.484567 eV Core-core repulsion = 17480.718030 eV Total energy + Delta-G solvation = -3283.766537 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.34359 -38.76260 -37.61626 -35.18061 -34.11486 -31.39373 -31.20469 -30.44522 -29.19853 -26.86018 -25.70901 -23.81981 -22.64997 -21.90038 -21.19194 -19.68103 -18.56272 -16.77299 -16.57688 -16.32014 -16.22750 -15.73527 -15.09008 -14.78578 -14.49340 -14.43915 -13.70725 -13.55601 -13.40045 -13.06784 -12.91255 -12.71449 -12.26799 -11.90705 -11.78439 -11.63710 -11.22438 -11.10076 -10.97871 -10.79064 -10.59365 -10.30949 -9.95134 -9.81383 -9.27384 -8.99610 -8.50109 -8.44254 -8.40906 -6.72063 -5.62665 -3.07220 1.07141 1.19845 2.95840 3.44368 3.50210 3.52430 3.53647 3.64573 3.76855 4.50251 4.58003 4.60699 4.76879 4.84341 4.89022 5.04145 5.11884 5.22067 5.35545 5.51123 5.64148 5.67277 5.75283 5.81219 6.05238 6.08999 6.14504 6.21423 6.26809 6.36371 6.52081 6.77305 6.97800 7.21262 7.43199 7.81446 7.90877 8.15658 8.45532 9.17518 9.30129 9.92006 10.38668 11.42191 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031035 B = 0.003033 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.978363 B = 9229.376350 C = 9669.685766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.573 5.573 3 C -0.258 4.258 4 H 0.070 0.930 5 C 0.006 3.994 6 N -0.897 5.897 7 Si 0.906 3.094 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.133 3.867 12 C 0.469 3.531 13 O -0.510 6.510 14 N -0.748 5.748 15 C 0.122 3.878 16 C 0.050 3.950 17 O -0.308 6.308 18 C 0.133 3.867 19 C -0.153 4.153 20 C -0.081 4.081 21 C -0.164 4.164 22 C -0.082 4.082 23 C -0.212 4.212 24 H 0.034 0.966 25 H 0.047 0.953 26 H -0.003 1.003 27 H 0.252 0.748 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.393 0.607 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.490 -21.642 1.598 24.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.293 5.293 3 C -0.387 4.387 4 H 0.088 0.912 5 C -0.193 4.193 6 N -0.540 5.540 7 Si 0.736 3.264 8 H -0.214 1.214 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.000 4.000 12 C 0.253 3.747 13 O -0.381 6.381 14 N -0.406 5.406 15 C -0.002 4.002 16 C -0.025 4.025 17 O -0.221 6.221 18 C 0.088 3.912 19 C -0.171 4.171 20 C -0.099 4.099 21 C -0.182 4.182 22 C -0.100 4.100 23 C -0.230 4.230 24 H 0.053 0.947 25 H 0.066 0.934 26 H 0.016 0.984 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.227 0.773 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.041 -20.699 2.284 23.571 hybrid contribution 0.461 0.357 -0.030 0.584 sum 11.502 -20.343 2.254 23.478 Atomic orbital electron populations 1.20859 0.81965 0.95410 0.99933 1.43904 1.02109 0.99833 1.83465 1.19166 0.97208 0.84497 1.37845 0.91196 1.25030 0.97905 0.98466 0.97931 1.70126 1.18602 1.26634 1.38674 0.86252 0.78692 0.83958 0.77465 1.21409 1.21768 1.20562 1.20997 0.97992 0.90271 0.90712 1.23677 0.76489 0.78968 0.95566 1.90702 1.48799 1.52302 1.46343 1.46532 1.61187 1.26158 1.06684 1.21233 0.98624 0.93710 0.86679 1.23163 0.81703 0.99036 0.98639 1.86183 1.25950 1.32315 1.77690 1.19088 0.90855 0.86130 0.95158 1.20524 0.92199 1.00280 1.04146 1.20989 0.99168 0.92046 0.97741 1.21060 0.96765 0.97835 1.02540 1.20949 0.93725 0.97960 0.97339 1.21294 1.01718 0.92891 1.07135 0.94735 0.93449 0.98442 0.93818 0.90855 0.91547 0.77344 0.89998 0.91019 0.91337 0.90808 0.85054 0.85431 0.86063 0.85930 0.85467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.23 9.02 59.85 0.54 4.77 16 2 N -0.57 -15.16 2.41 -182.49 -0.44 -15.60 16 3 C -0.26 -7.44 9.68 -15.06 -0.15 -7.59 16 4 H 0.07 1.96 7.86 -52.49 -0.41 1.54 16 5 C 0.01 0.17 5.06 -17.43 -0.09 0.09 16 6 N -0.90 -27.71 10.66 55.49 0.59 -27.12 16 7 Si 0.91 22.79 29.58 -169.99 -5.03 17.76 16 8 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 9 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 C 0.13 2.76 6.19 -5.19 -0.03 2.73 16 12 C 0.47 9.92 7.90 -10.98 -0.09 9.83 16 13 O -0.51 -13.70 16.43 5.56 0.09 -13.61 16 14 N -0.75 -11.62 5.50 -60.29 -0.33 -11.95 16 15 C 0.12 1.67 6.06 -4.04 -0.02 1.64 16 16 C 0.05 0.50 4.87 37.16 0.18 0.68 16 17 O -0.31 -3.72 10.08 -19.45 -0.20 -3.92 16 18 C 0.13 1.46 6.69 -39.22 -0.26 1.20 16 19 C -0.15 -1.56 9.99 -39.43 -0.39 -1.96 16 20 C -0.08 -0.69 10.04 -39.60 -0.40 -1.08 16 21 C -0.16 -1.30 10.04 -39.56 -0.40 -1.70 16 22 C -0.08 -0.67 10.04 -39.60 -0.40 -1.06 16 23 C -0.21 -1.96 9.04 -39.44 -0.36 -2.32 16 24 H 0.03 1.00 7.40 -51.93 -0.38 0.62 16 25 H 0.05 1.29 7.21 -51.93 -0.37 0.91 16 26 H 0.00 -0.07 7.83 -51.93 -0.41 -0.47 16 27 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.07 1.40 8.03 -51.93 -0.42 0.99 16 29 H 0.07 1.16 7.86 -51.93 -0.41 0.75 16 30 H 0.39 4.98 8.47 -40.82 -0.35 4.63 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.07 0.58 7.66 -51.93 -0.40 0.18 16 34 H 0.07 0.61 7.66 -51.93 -0.40 0.21 16 35 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 36 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 38 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.13 0.97 6.30 -52.49 -0.33 0.64 16 LS Contribution 333.73 15.07 5.03 5.03 Total: -1.00 -36.31 333.73 -7.69 -44.00 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.55 Total: 0.17 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -1.86 Total: 5.24 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: -0.18 Total: -54.67 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.10 Total: -17.53 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.03 Total: 17.76 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -36.31 -7.69 -44.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972796.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.347 kcal (2) G-P(sol) polarization free energy of solvation -36.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds