Wall clock time and date at job start Mon Mar 30 2020 23:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36934 * 120.00191 * 2 1 4 4 H 1.07997 * 120.00089 * 200.27471 * 3 2 1 5 5 C 1.38813 * 120.00020 * 20.27539 * 3 2 1 6 6 N 1.31624 * 119.99999 * 15.01523 * 5 3 2 7 7 Si 1.86796 * 120.00241 * 195.01906 * 5 3 2 8 8 H 1.48500 * 109.47266 * 85.00247 * 7 5 3 9 9 H 1.48495 * 109.47482 * 205.00108 * 7 5 3 10 10 H 1.48503 * 109.47108 * 325.00195 * 7 5 3 11 11 C 1.46497 * 119.99758 * 180.02562 * 2 1 3 12 12 C 1.50708 * 109.46980 * 269.99845 * 11 2 1 13 13 O 1.21278 * 119.99903 * 0.02562 * 12 11 2 14 14 N 1.34776 * 119.99672 * 180.02562 * 12 11 2 15 15 C 1.46501 * 119.99634 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.47121 * 180.02562 * 15 14 12 17 17 O 1.42902 * 109.46848 * 65.00283 * 16 15 14 18 18 C 1.35906 * 116.99632 * 180.02562 * 17 16 15 19 19 C 1.38728 * 120.05089 * 179.97438 * 18 17 16 20 20 C 1.38145 * 119.94203 * 179.97438 * 19 18 17 21 21 C 1.38273 * 120.05680 * 0.02562 * 20 19 18 22 22 C 1.38268 * 120.10748 * 359.95537 * 21 20 19 23 23 C 1.38144 * 120.05528 * 0.04727 * 22 21 20 24 24 H 1.09005 * 109.47216 * 275.10343 * 1 2 3 25 25 H 1.09007 * 109.46960 * 35.10175 * 1 2 3 26 26 H 1.09001 * 109.46976 * 155.09914 * 1 2 3 27 27 H 0.96998 * 120.00256 * 179.97438 * 6 5 3 28 28 H 1.09006 * 109.47279 * 150.00395 * 11 2 1 29 29 H 1.08993 * 109.47516 * 29.99811 * 11 2 1 30 30 H 0.96998 * 120.00243 * 0.02562 * 14 12 11 31 31 H 1.09006 * 109.47224 * 60.00072 * 15 14 12 32 32 H 1.08998 * 109.47405 * 300.00088 * 15 14 12 33 33 H 1.09000 * 109.47161 * 304.99847 * 16 15 14 34 34 H 1.09001 * 109.46942 * 184.99835 * 16 15 14 35 35 H 1.08000 * 120.02963 * 359.70193 * 19 18 17 36 36 H 1.08001 * 119.97755 * 180.02562 * 20 19 18 37 37 H 1.08000 * 119.94397 * 179.97438 * 21 20 19 38 38 H 1.08000 * 119.97176 * 180.02562 * 22 21 20 39 39 H 1.08001 * 120.02522 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1795 1.2148 -0.3241 5 6 1.5202 2.3508 0.4166 6 7 0.3864 2.2844 1.0819 7 14 2.2820 4.0126 0.0330 8 1 1.8689 4.4446 -1.3264 9 1 1.8209 5.0109 1.0309 10 1 3.7620 3.9036 0.0893 11 6 2.1974 -1.2687 -0.0006 12 6 2.4486 -1.7044 1.4201 13 8 2.0542 -1.0225 2.3422 14 7 3.1116 -2.8518 1.6659 15 6 3.3552 -3.2756 3.0469 16 6 4.1214 -4.5999 3.0464 17 8 5.4172 -4.4002 2.4780 18 6 6.2315 -5.4857 2.4019 19 6 7.5030 -5.3638 1.8608 20 6 8.3290 -6.4685 1.7851 21 6 7.8891 -7.6951 2.2476 22 6 6.6224 -7.8191 2.7877 23 6 5.7926 -6.7173 2.8656 24 1 -0.3634 0.0914 1.0236 25 1 -0.3633 0.8408 -0.5910 26 1 -0.3633 -0.9321 -0.4327 27 1 -0.0533 3.0984 1.3733 28 1 3.1500 -1.1382 -0.5143 29 1 1.6084 -2.0281 -0.5147 30 1 3.4273 -3.3970 0.9284 31 1 2.4026 -3.4067 3.5602 32 1 3.9437 -2.5161 3.5616 33 1 3.5751 -5.3355 2.4560 34 1 4.2252 -4.9600 4.0699 35 1 7.8453 -4.4070 1.4950 36 1 9.3192 -6.3742 1.3643 37 1 8.5362 -8.5577 2.1871 38 1 6.2812 -8.7781 3.1486 39 1 4.8031 -6.8148 3.2872 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972796.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:50:06 Heat of formation + Delta-G solvation = -42.000710 kcal Electronic energy + Delta-G solvation = -20765.583570 eV Core-core repulsion = 17480.718030 eV Total energy + Delta-G solvation = -3284.865540 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.12995 -40.33722 -38.43330 -37.08592 -35.60757 -33.31926 -32.05347 -31.41373 -30.20428 -28.50925 -27.82873 -24.86398 -23.53971 -23.27906 -22.30650 -21.31020 -19.29716 -18.81657 -17.99310 -17.47511 -17.04291 -16.76764 -16.61001 -16.13907 -15.98430 -15.38550 -15.24798 -14.86886 -14.75710 -14.31806 -14.25901 -13.85486 -13.59506 -13.44917 -13.05336 -12.81514 -12.72456 -12.51801 -12.42242 -12.21896 -12.03566 -11.96421 -11.86998 -11.69784 -10.88703 -10.51272 -9.95613 -9.91870 -9.14672 -8.82662 -7.81093 -5.28518 0.42655 0.52476 1.44955 1.47607 1.55705 1.95967 2.17107 2.38513 2.54156 2.88401 3.34715 3.70018 3.71493 3.96280 4.04467 4.06564 4.25210 4.32739 4.34089 4.43307 4.53906 4.61479 4.64223 4.73258 4.79680 4.83584 4.85255 5.12232 5.30350 5.39410 5.51630 5.60953 5.61149 5.63934 5.74848 5.89711 6.28531 6.47167 6.76885 7.13596 7.57954 7.86443 8.26137 9.22760 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031035 B = 0.003033 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.978363 B = 9229.376350 C = 9669.685766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.594 5.594 3 C -0.265 4.265 4 H 0.075 0.925 5 C -0.058 4.058 6 N -0.935 5.935 7 Si 0.973 3.027 8 H -0.276 1.276 9 H -0.299 1.299 10 H -0.270 1.270 11 C 0.127 3.873 12 C 0.471 3.529 13 O -0.576 6.576 14 N -0.724 5.724 15 C 0.121 3.879 16 C 0.060 3.940 17 O -0.332 6.332 18 C 0.110 3.890 19 C -0.175 4.175 20 C -0.086 4.086 21 C -0.165 4.165 22 C -0.086 4.086 23 C -0.217 4.217 24 H -0.007 1.007 25 H 0.024 0.976 26 H 0.040 0.960 27 H 0.245 0.755 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.412 0.588 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.125 0.875 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.091 -24.337 0.779 27.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.315 5.315 3 C -0.395 4.395 4 H 0.093 0.907 5 C -0.253 4.253 6 N -0.581 5.581 7 Si 0.801 3.199 8 H -0.203 1.203 9 H -0.226 1.226 10 H -0.195 1.195 11 C -0.004 4.004 12 C 0.257 3.743 13 O -0.453 6.453 14 N -0.380 5.380 15 C -0.003 4.003 16 C -0.015 4.015 17 O -0.246 6.246 18 C 0.065 3.935 19 C -0.193 4.193 20 C -0.103 4.103 21 C -0.183 4.183 22 C -0.104 4.104 23 C -0.236 4.236 24 H 0.011 0.989 25 H 0.042 0.958 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.111 0.889 29 H 0.126 0.874 30 H 0.248 0.752 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.143 0.857 36 H 0.165 0.835 37 H 0.163 0.837 38 H 0.165 0.835 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 12.708 -23.492 1.426 26.746 hybrid contribution 0.080 0.973 0.217 1.000 sum 12.788 -22.519 1.643 25.949 Atomic orbital electron populations 1.20576 0.82350 0.96503 0.97322 1.44076 1.02349 1.01155 1.83882 1.19556 0.97416 0.85874 1.36637 0.90677 1.25889 0.98729 1.02190 0.98461 1.70332 1.20301 1.26920 1.40537 0.85201 0.78179 0.79297 0.77233 1.20274 1.22577 1.19516 1.21256 0.99148 0.89145 0.90832 1.23405 0.76320 0.79713 0.94898 1.90693 1.51928 1.54748 1.47980 1.46132 1.58917 1.24462 1.08526 1.21318 0.99110 0.95052 0.84860 1.23104 0.81080 0.96895 1.00459 1.86120 1.26676 1.33500 1.78336 1.19296 0.91100 0.86490 0.96626 1.20708 0.92700 1.00860 1.05078 1.21285 0.99824 0.91800 0.97439 1.21436 0.97107 0.98347 1.01445 1.21325 0.93658 0.98696 0.96717 1.21525 1.02673 0.92491 1.06890 0.98883 0.95770 0.94204 0.94558 0.88885 0.87441 0.75178 0.89687 0.93451 0.89026 0.88605 0.85659 0.83453 0.83656 0.83475 0.83931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.33 9.02 127.77 1.15 10.48 16 2 N -0.59 -31.33 2.41 -731.29 -1.77 -33.10 16 3 C -0.26 -15.37 9.68 84.03 0.81 -14.56 16 4 H 0.08 4.17 7.86 -2.91 -0.02 4.15 16 5 C -0.06 -3.45 5.06 84.86 0.43 -3.02 16 6 N -0.93 -59.85 10.66 21.65 0.23 -59.62 16 7 Si 0.97 47.69 29.58 68.60 2.03 49.72 16 8 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 9 H -0.30 -14.87 7.11 99.48 0.71 -14.17 16 10 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 11 C 0.13 5.05 6.19 85.64 0.53 5.58 16 12 C 0.47 19.66 7.90 87.66 0.69 20.35 16 13 O -0.58 -31.70 16.43 -3.02 -0.05 -31.74 16 14 N -0.72 -21.40 5.50 -463.05 -2.55 -23.95 16 15 C 0.12 3.19 6.06 86.38 0.52 3.71 16 16 C 0.06 1.07 4.87 71.98 0.35 1.42 16 17 O -0.33 -7.60 10.08 -92.50 -0.93 -8.53 16 18 C 0.11 2.25 6.69 22.50 0.15 2.40 16 19 C -0.17 -3.42 9.99 22.36 0.22 -3.20 16 20 C -0.09 -1.28 10.04 22.26 0.22 -1.06 16 21 C -0.17 -2.14 10.04 22.29 0.22 -1.91 16 22 C -0.09 -1.14 10.04 22.25 0.22 -0.92 16 23 C -0.22 -3.48 9.04 22.36 0.20 -3.27 16 24 H -0.01 -0.44 7.40 -2.38 -0.02 -0.46 16 25 H 0.02 1.33 7.21 -2.38 -0.02 1.31 16 26 H 0.04 1.70 7.83 -2.39 -0.02 1.68 16 27 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 28 H 0.09 3.33 8.03 -2.38 -0.02 3.31 16 29 H 0.11 3.37 7.86 -2.39 -0.02 3.35 16 30 H 0.41 9.34 8.47 -92.71 -0.79 8.56 16 31 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 32 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.09 1.24 7.66 -2.39 -0.02 1.23 16 34 H 0.10 1.33 7.66 -2.39 -0.02 1.32 16 35 H 0.13 2.45 8.06 -2.91 -0.02 2.43 16 36 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 37 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 38 H 0.15 1.16 8.06 -2.91 -0.02 1.14 16 39 H 0.14 1.71 6.30 -2.91 -0.02 1.69 16 Total: -1.00 -82.09 333.73 2.97 -79.13 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.26 Total: 12.10 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: 5.74 Total: 16.01 kcal Atomic # 7 Polarization: -112.59 SS G_CDS: -4.08 Total: -116.67 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -0.98 Total: -40.28 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.72 kcal Total: -82.09 2.97 -79.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972796.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.126 kcal (2) G-P(sol) polarization free energy of solvation -82.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds