Wall clock time and date at job start Mon Mar 30 2020 23:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36941 * 120.00217 * 2 1 4 4 H 1.08003 * 120.00065 * 203.78638 * 3 2 1 5 5 C 1.38819 * 119.99615 * 23.77350 * 3 2 1 6 6 N 1.31611 * 119.99940 * 11.57756 * 5 3 2 7 7 Si 1.86802 * 119.99748 * 191.57593 * 5 3 2 8 8 H 1.48494 * 109.47176 * 90.00090 * 7 5 3 9 9 H 1.48500 * 109.47220 * 210.00357 * 7 5 3 10 10 H 1.48508 * 109.47117 * 330.00223 * 7 5 3 11 11 C 1.46500 * 120.00178 * 179.97438 * 2 1 3 12 12 H 1.09000 * 109.49840 * 180.02562 * 11 2 1 13 13 C 1.53036 * 109.49669 * 59.99974 * 11 2 1 14 14 C 1.53045 * 109.53817 * 178.68371 * 13 11 2 15 15 C 1.53196 * 109.31372 * 61.36502 * 14 13 11 16 16 N 1.46924 * 108.77103 * 305.36810 * 15 14 13 17 17 C 1.34783 * 120.62710 * 233.57927 * 16 15 14 18 18 O 1.21611 * 120.00193 * 181.00042 * 17 16 15 19 19 C 1.47377 * 119.99707 * 1.00541 * 17 16 15 20 20 C 1.47024 * 127.18840 * 153.05687 * 19 17 16 21 21 C 1.34183 * 105.95246 * 180.02562 * 20 19 17 22 22 O 1.34209 * 109.12377 * 0.24336 * 21 20 19 23 23 C 1.33657 * 110.90873 * 359.58746 * 22 21 20 24 24 C 1.46925 * 118.74489 * 53.85960 * 16 15 14 25 25 H 1.09000 * 109.46972 * 275.27711 * 1 2 3 26 26 H 1.08992 * 109.47128 * 35.27534 * 1 2 3 27 27 H 1.09001 * 109.46951 * 155.27638 * 1 2 3 28 28 H 0.96999 * 119.99598 * 179.97438 * 6 5 3 29 29 H 1.09003 * 109.46019 * 58.66574 * 13 11 2 30 30 H 1.08997 * 109.46018 * 298.70089 * 13 11 2 31 31 H 1.09004 * 109.49791 * 301.41281 * 14 13 11 32 32 H 1.08997 * 109.52454 * 181.33274 * 14 13 11 33 33 H 1.08994 * 109.58820 * 185.57821 * 15 14 13 34 34 H 1.09000 * 109.58160 * 65.14923 * 15 14 13 35 35 H 1.07993 * 127.02508 * 0.02654 * 20 19 17 36 36 H 1.07997 * 125.43635 * 179.97438 * 21 20 19 37 37 H 1.08005 * 125.79973 * 180.13273 * 23 22 21 38 38 H 1.09004 * 109.58224 * 65.92241 * 24 16 15 39 39 H 1.08995 * 109.58761 * 186.35165 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1610 1.2256 -0.3772 5 6 1.5439 2.3371 0.4847 6 7 0.4107 2.2547 1.1488 7 14 2.3374 4.0031 0.1942 8 1 1.8358 4.5746 -1.0813 9 1 1.9953 4.9163 1.3142 10 1 3.8118 3.8428 0.1189 11 6 2.1975 -1.2687 0.0006 12 1 3.2693 -1.0700 0.0009 13 6 1.8282 -2.0723 -1.2484 14 6 2.6176 -3.3833 -1.2655 15 6 2.2497 -4.2124 -0.0309 16 7 2.4654 -3.3936 1.1699 17 6 3.2358 -3.8450 2.1795 18 8 3.3919 -3.1656 3.1760 19 6 3.8891 -5.1620 2.0758 20 6 5.1296 -5.5931 2.7368 21 6 5.3331 -6.8612 2.3481 22 8 4.3448 -7.2308 1.5186 23 6 3.4697 -6.2354 1.3461 24 6 1.8203 -2.0761 1.2519 25 1 -0.3633 0.0945 1.0233 26 1 -0.3633 0.8389 -0.5934 27 1 -0.3633 -0.9335 -0.4298 28 1 -0.0124 3.0590 1.4877 29 1 2.0698 -1.4913 -2.1385 30 1 0.7606 -2.2914 -1.2367 31 1 3.6856 -3.1652 -1.2522 32 1 2.3722 -3.9446 -2.1670 33 1 2.8802 -5.1003 0.0142 34 1 1.2022 -4.5080 -0.0882 35 1 5.7503 -5.0087 3.3997 36 1 6.1623 -7.4835 2.6507 37 1 2.5835 -6.2731 0.7297 38 1 0.7384 -2.2012 1.2970 39 1 2.1675 -1.5542 2.1436 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027297821.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:13 Heat of formation + Delta-G solvation = 25.401034 kcal Electronic energy + Delta-G solvation = -22114.019392 eV Core-core repulsion = 18832.076611 eV Total energy + Delta-G solvation = -3281.942781 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.70308 -39.72374 -37.31771 -35.15038 -33.09344 -32.23672 -31.32179 -30.25851 -28.44818 -25.99836 -25.70589 -23.71758 -22.63625 -21.81371 -21.36630 -19.95120 -18.89595 -17.50291 -16.73828 -16.71533 -16.19707 -15.54352 -15.03783 -14.67466 -14.60531 -14.00515 -13.69583 -13.64852 -13.20010 -13.03153 -12.73248 -12.50139 -12.44192 -12.21327 -11.87315 -11.12896 -11.01187 -10.79895 -10.60194 -10.40692 -10.33444 -10.17215 -9.94524 -9.85802 -9.75863 -9.62904 -8.88519 -8.57441 -8.31297 -6.73555 -5.70764 -3.18777 1.30026 2.00493 2.74628 3.14343 3.40474 3.43999 3.46683 3.48278 4.42477 4.50299 4.55112 4.82716 4.88656 5.11170 5.25526 5.30194 5.44698 5.50986 5.54316 5.55211 5.72420 5.77669 5.90984 6.00053 6.11854 6.14919 6.23476 6.38108 6.51041 6.68131 6.77598 6.81080 6.93550 6.99426 7.37883 7.66610 7.74245 7.82671 8.39535 8.44330 9.24861 9.86923 10.35895 11.33514 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029271 B = 0.004310 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.354793 B = 6495.523492 C = 6885.380344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.591 5.591 3 C -0.257 4.257 4 H 0.068 0.932 5 C 0.005 3.995 6 N -0.906 5.906 7 Si 0.906 3.094 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.169 3.831 12 H 0.065 0.935 13 C -0.134 4.134 14 C -0.130 4.130 15 C 0.081 3.919 16 N -0.600 5.600 17 C 0.578 3.422 18 O -0.535 6.535 19 C -0.220 4.220 20 C -0.167 4.167 21 C -0.043 4.043 22 O -0.178 6.178 23 C -0.003 4.003 24 C 0.100 3.900 25 H 0.031 0.969 26 H 0.041 0.959 27 H 0.000 1.000 28 H 0.253 0.747 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.158 0.842 36 H 0.207 0.793 37 H 0.224 0.776 38 H 0.063 0.937 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.241 -19.471 -3.142 20.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.313 5.313 3 C -0.387 4.387 4 H 0.086 0.914 5 C -0.194 4.194 6 N -0.550 5.550 7 Si 0.736 3.264 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.059 3.941 12 H 0.083 0.917 13 C -0.173 4.173 14 C -0.169 4.169 15 C -0.042 4.042 16 N -0.333 5.333 17 C 0.366 3.634 18 O -0.413 6.413 19 C -0.224 4.224 20 C -0.187 4.187 21 C -0.109 4.109 22 O -0.074 6.074 23 C -0.072 4.072 24 C -0.024 4.024 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.018 0.982 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.176 0.824 36 H 0.224 0.776 37 H 0.240 0.760 38 H 0.081 0.919 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.178 -19.182 -2.658 20.045 hybrid contribution 0.307 1.191 0.000 1.230 sum 5.485 -17.991 -2.658 18.995 Atomic orbital electron populations 1.20800 0.82614 0.95411 0.99533 1.43934 1.01841 1.00026 1.85503 1.19230 0.98885 0.85454 1.35100 0.91406 1.25063 0.97820 0.98632 0.97874 1.70054 1.18990 1.27365 1.38627 0.86232 0.78882 0.84034 0.77256 1.21501 1.21693 1.20462 1.20726 0.96513 0.86187 0.90652 0.91682 1.22095 0.99620 0.94970 1.00624 1.21894 1.01172 0.97288 0.96536 1.22413 1.01459 0.94858 0.85425 1.48147 1.48749 1.19400 1.17041 1.17364 0.78480 0.84483 0.83052 1.90800 1.62104 1.58007 1.30405 1.21660 0.99912 0.96124 1.04724 1.22809 0.97291 0.95455 1.03126 1.23915 0.93977 0.96773 0.96216 1.83804 1.30379 1.39755 1.53418 1.25062 0.95701 0.85861 1.00622 1.22675 0.96545 0.80586 1.02545 0.95048 0.94032 0.98204 0.93703 0.91659 0.92223 0.91666 0.91178 0.88911 0.91158 0.82425 0.77612 0.76044 0.91912 0.88924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.91 7.91 59.85 0.47 4.38 16 2 N -0.59 -14.77 2.81 -173.09 -0.49 -15.25 16 3 C -0.26 -7.14 9.58 -15.05 -0.14 -7.28 16 4 H 0.07 1.86 7.82 -52.48 -0.41 1.45 16 5 C 0.00 0.13 5.13 -17.43 -0.09 0.05 16 6 N -0.91 -26.63 10.68 55.49 0.59 -26.04 16 7 Si 0.91 22.18 29.57 -169.99 -5.03 17.15 16 8 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 9 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 C 0.17 3.47 2.75 -67.59 -0.19 3.28 16 12 H 0.06 1.43 7.87 -51.93 -0.41 1.02 16 13 C -0.13 -2.18 5.13 -26.69 -0.14 -2.31 16 14 C -0.13 -1.60 6.08 -26.61 -0.16 -1.76 16 15 C 0.08 0.94 5.50 -3.71 -0.02 0.92 16 16 N -0.60 -9.71 2.97 -173.79 -0.52 -10.23 16 17 C 0.58 10.12 7.68 -12.54 -0.10 10.02 16 18 O -0.54 -11.74 16.48 5.27 0.09 -11.65 16 19 C -0.22 -2.98 5.93 -103.28 -0.61 -3.59 16 20 C -0.17 -1.98 11.11 -37.45 -0.42 -2.39 16 21 C -0.04 -0.38 12.03 29.30 0.35 -0.03 16 22 O -0.18 -1.73 10.52 7.66 0.08 -1.65 16 23 C 0.00 -0.04 9.88 30.07 0.30 0.26 16 24 C 0.10 1.97 5.81 -3.49 -0.02 1.95 16 25 H 0.03 0.83 7.32 -51.93 -0.38 0.45 16 26 H 0.04 1.09 7.36 -51.93 -0.38 0.70 16 27 H 0.00 -0.01 6.46 -51.93 -0.34 -0.35 16 28 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.06 0.96 6.72 -51.93 -0.35 0.61 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 0.85 3.31 -51.93 -0.17 0.67 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.16 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.21 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.22 1.51 5.78 -52.48 -0.30 1.21 16 38 H 0.06 1.23 7.53 -51.93 -0.39 0.84 16 39 H 0.09 2.18 7.01 -51.93 -0.36 1.81 16 LS Contribution 313.03 15.07 4.72 4.72 Total: -1.00 -33.81 313.03 -6.48 -40.29 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -5.17 Total: -0.82 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -0.76 Total: 3.48 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -0.41 Total: -51.52 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.17 Total: -13.30 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.81 -6.48 -40.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027297821.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.689 kcal (2) G-P(sol) polarization free energy of solvation -33.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds