Wall clock time and date at job start Tue Mar 31 2020 00:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99603 * 2 1 4 4 H 1.48506 * 109.47050 * 239.99569 * 3 2 1 5 5 H 1.48502 * 109.47454 * 0.02562 * 3 2 1 6 6 H 1.48511 * 109.47009 * 120.00111 * 3 2 1 7 7 C 1.38813 * 120.00428 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00321 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99728 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00139 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47182 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.47182 * 179.97438 * 11 10 9 13 13 C 1.34770 * 120.00103 * 179.97438 * 12 11 10 14 14 O 1.21622 * 120.00128 * 0.02562 * 13 12 11 15 15 C 1.47323 * 119.99926 * 179.97438 * 13 12 11 16 16 C 1.36580 * 126.21275 * 180.02562 * 15 13 12 17 17 N 1.34862 * 106.78895 * 179.97438 * 16 15 13 18 18 C 1.36378 * 107.84594 * 0.04412 * 17 16 15 19 19 N 1.29731 * 108.91533 * 359.96110 * 18 17 16 20 20 C 1.51101 * 123.85733 * 179.85198 * 18 17 16 21 21 C 1.53390 * 108.23144 * 344.11121 * 20 18 17 22 22 C 1.53140 * 109.25168 * 48.92220 * 21 20 18 23 23 C 1.46575 * 127.50467 * 180.11069 * 17 16 15 24 24 H 0.96997 * 120.00264 * 359.97438 * 1 2 3 25 25 H 0.97008 * 119.99950 * 0.02562 * 9 7 2 26 26 H 1.08996 * 109.46922 * 59.99737 * 10 9 7 27 27 H 1.09000 * 109.46672 * 299.99827 * 10 9 7 28 28 H 1.09001 * 109.47317 * 59.99521 * 11 10 9 29 29 H 1.09000 * 109.47006 * 299.99414 * 11 10 9 30 30 H 0.97003 * 119.99412 * 359.97438 * 12 11 10 31 31 H 1.07996 * 126.60099 * 359.88834 * 16 15 13 32 32 H 1.09002 * 109.71824 * 224.41600 * 20 18 17 33 33 H 1.09001 * 109.72087 * 103.81171 * 20 18 17 34 34 H 1.08993 * 109.50599 * 168.85183 * 21 20 18 35 35 H 1.08991 * 109.50738 * 288.99122 * 21 20 18 36 36 H 1.09002 * 109.46284 * 50.22125 * 22 21 20 37 37 H 1.09002 * 109.45839 * 170.18784 * 22 21 20 38 38 H 1.09002 * 109.58215 * 42.98441 * 23 17 16 39 39 H 1.08998 * 109.58853 * 282.56460 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0017 11 6 1.0640 -4.8197 0.0008 12 7 1.7965 -6.0884 0.0013 13 6 1.1227 -7.2556 0.0012 14 8 -0.0935 -7.2556 0.0002 15 6 1.8594 -8.5314 0.0011 16 6 1.3085 -9.7812 0.0005 17 7 2.3329 -10.6584 0.0001 18 6 3.4947 -9.9442 0.0015 19 7 3.2103 -8.6785 0.0019 20 6 4.8690 -10.5723 0.0048 21 6 4.7222 -12.0458 0.4051 22 6 3.6122 -12.6882 -0.4318 23 6 2.2544 -12.1220 -0.0028 24 1 -0.4850 0.8400 0.0004 25 1 0.3557 -2.3880 -0.0002 26 1 2.6842 -3.7140 0.8921 27 1 2.6855 -3.7148 -0.8878 28 1 0.4383 -4.7621 -0.8899 29 1 0.4364 -4.7618 0.8901 30 1 2.7666 -6.0883 0.0017 31 1 0.2555 -10.0208 0.0017 32 1 5.5068 -10.0578 0.7236 33 1 5.3072 -10.5036 -0.9909 34 1 5.6621 -12.5673 0.2247 35 1 4.4655 -12.1119 1.4623 36 1 3.7799 -12.4698 -1.4865 37 1 3.6205 -13.7674 -0.2788 38 1 1.4856 -12.4453 -0.7046 39 1 2.0105 -12.4769 0.9985 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128564494.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:45 Heat of formation + Delta-G solvation = 24.762486 kcal Electronic energy + Delta-G solvation = -20531.868323 eV Core-core repulsion = 17282.190604 eV Total energy + Delta-G solvation = -3249.677720 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.61741 -39.09266 -36.89074 -35.51636 -33.88446 -33.54424 -31.20420 -30.27668 -28.94446 -27.64852 -25.06654 -23.78317 -22.64504 -22.51673 -21.26980 -19.86000 -19.42066 -17.75156 -17.15032 -16.46102 -16.37565 -15.48506 -15.16347 -14.80078 -14.60830 -14.46229 -14.34085 -13.98854 -13.91541 -13.49071 -13.33339 -13.05611 -12.72906 -12.28780 -11.74972 -11.66860 -11.57855 -11.30145 -11.00529 -10.73362 -10.72894 -10.41360 -10.09724 -9.95169 -9.87981 -9.64567 -8.88566 -8.76004 -8.49086 -6.90655 -5.71855 -3.01963 1.51404 2.27705 2.31373 3.47827 3.48518 3.52887 3.55257 3.67866 3.80818 4.01025 4.07633 4.12651 4.54816 4.65387 4.67412 4.78942 4.81772 5.03460 5.10507 5.15648 5.29916 5.31118 5.48851 5.57801 5.58747 5.69505 5.86652 5.90851 6.09585 6.25492 6.33486 6.65711 6.76025 6.84227 6.92040 7.59386 7.73375 7.94199 8.45820 8.52997 9.57039 10.12842 10.48094 11.50864 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.042277 B = 0.002629 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.136625 B =10647.390597 C =11250.532797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.911 3.089 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.730 5.730 10 C 0.144 3.856 11 C 0.111 3.889 12 N -0.708 5.708 13 C 0.600 3.400 14 O -0.549 6.549 15 C -0.058 4.058 16 C 0.034 3.966 17 N -0.456 5.456 18 C 0.208 3.792 19 N -0.456 5.456 20 C -0.034 4.034 21 C -0.126 4.126 22 C -0.136 4.136 23 C 0.101 3.899 24 H 0.256 0.744 25 H 0.386 0.614 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.407 0.593 31 H 0.188 0.812 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.111 -31.450 -0.040 32.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.016 3.984 11 C -0.012 4.012 12 N -0.358 5.358 13 C 0.385 3.615 14 O -0.427 6.427 15 C -0.187 4.187 16 C -0.105 4.105 17 N -0.139 5.139 18 C -0.056 4.056 19 N -0.175 5.175 20 C -0.072 4.072 21 C -0.164 4.164 22 C -0.173 4.173 23 C -0.021 4.021 24 H 0.066 0.934 25 H 0.220 0.780 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.242 0.758 31 H 0.205 0.795 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.892 -30.757 -0.040 32.016 hybrid contribution -0.104 0.282 -0.002 0.301 sum 8.788 -30.475 -0.042 31.716 Atomic orbital electron populations 1.69661 1.05127 1.25855 1.57417 1.24776 0.95568 0.97772 1.02873 0.86219 0.78462 0.83340 0.77846 1.21221 1.21668 1.21226 1.19168 0.91036 0.83899 1.43133 0.91072 1.42191 1.06000 0.99590 1.89691 1.20758 0.93509 0.85565 0.98533 1.21586 0.95430 0.81669 1.02524 1.45713 1.10997 1.05362 1.73740 1.16850 0.86129 0.82137 0.76334 1.90794 1.12901 1.87374 1.51662 1.20680 0.89835 0.93538 1.14642 1.22431 0.94426 0.88747 1.04870 1.45339 1.06689 1.07606 1.54254 1.23503 0.89646 0.86583 1.05870 1.70353 1.13233 1.15866 1.18070 1.20243 0.88698 0.94203 1.04104 1.21686 0.99507 0.94825 1.00409 1.21910 0.92877 1.01217 1.01346 1.22089 1.00141 0.76255 1.03597 0.93383 0.78020 0.95683 0.95693 0.91247 0.91241 0.75774 0.79455 0.88373 0.89031 0.89752 0.90997 0.90410 0.89087 0.88815 0.89371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.07 13.06 55.49 0.72 -28.34 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.92 29.55 -169.99 -5.02 17.90 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 7 C -0.24 -7.00 9.99 -15.06 -0.15 -7.15 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.73 -19.49 5.60 -59.91 -0.34 -19.83 16 10 C 0.14 3.09 6.37 -4.04 -0.03 3.06 16 11 C 0.11 2.15 5.79 -4.04 -0.02 2.13 16 12 N -0.71 -12.10 5.55 -61.42 -0.34 -12.44 16 13 C 0.60 10.55 7.81 -12.57 -0.10 10.45 16 14 O -0.55 -11.12 16.88 5.26 0.09 -11.03 16 15 C -0.06 -0.86 6.98 -82.97 -0.58 -1.44 16 16 C 0.03 0.40 11.32 -16.82 -0.19 0.21 16 17 N -0.46 -4.11 3.12 -113.42 -0.35 -4.46 16 18 C 0.21 2.16 7.65 -154.62 -1.18 0.98 16 19 N -0.46 -6.30 10.99 -7.00 -0.08 -6.38 16 20 C -0.03 -0.21 6.33 -27.48 -0.17 -0.38 16 21 C -0.13 -0.44 5.96 -26.46 -0.16 -0.60 16 22 C -0.14 -0.39 5.93 -26.54 -0.16 -0.55 16 23 C 0.10 0.45 6.96 -3.88 -0.03 0.42 16 24 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 25 H 0.39 10.83 7.67 -40.82 -0.31 10.51 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.41 6.35 8.18 -40.82 -0.33 6.02 16 31 H 0.19 1.81 8.06 -52.49 -0.42 1.39 16 32 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.07 0.27 8.12 -51.93 -0.42 -0.15 16 36 H 0.08 0.27 8.11 -51.93 -0.42 -0.16 16 37 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 38 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 330.37 15.07 4.98 4.98 Total: -1.00 -36.25 330.37 -8.89 -45.14 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -5.69 Total: 7.85 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: -2.86 Total: 6.62 kcal Atomic # 7 Polarization: -71.07 SS G_CDS: -0.38 Total: -71.46 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -36.25 -8.89 -45.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128564494.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.900 kcal (2) G-P(sol) polarization free energy of solvation -36.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds