Wall clock time and date at job start Tue Mar 31 2020 00:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 117.00144 * 2 1 4 4 O 1.20827 * 119.99909 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99988 * 180.02562 * 3 2 1 6 6 C 1.50696 * 109.47270 * 180.02562 * 5 3 2 7 7 C 1.37918 * 119.57947 * 125.30134 * 6 5 3 8 8 C 1.39458 * 119.06365 * 180.27454 * 7 6 5 9 9 N 1.39171 * 120.86534 * 179.70924 * 8 7 6 10 10 C 1.46499 * 120.00021 * 179.72320 * 9 8 7 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47291 * 179.97438 * 12 11 10 14 14 H 1.08006 * 119.99920 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31520 * 120.00162 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99868 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47023 * 90.00014 * 17 15 13 19 19 H 1.48496 * 109.47251 * 210.00457 * 17 15 13 20 20 H 1.48498 * 109.47139 * 330.00202 * 17 15 13 21 21 C 1.39498 * 118.27048 * 359.43701 * 8 7 6 22 22 C 1.37877 * 119.06768 * 0.27315 * 21 8 7 23 23 N 1.31985 * 119.57671 * 305.00244 * 6 5 3 24 24 H 1.09001 * 109.47449 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46998 * 299.99860 * 1 2 3 26 26 H 1.09000 * 109.47071 * 59.99673 * 1 2 3 27 27 H 1.09001 * 109.47434 * 60.00109 * 5 3 2 28 28 H 1.09000 * 109.47291 * 300.00278 * 5 3 2 29 29 H 1.07995 * 120.46725 * 359.97438 * 7 6 5 30 30 H 0.97000 * 119.99559 * 359.71568 * 9 8 7 31 31 H 1.09002 * 109.47391 * 59.99690 * 10 9 8 32 32 H 1.09001 * 109.46813 * 299.99746 * 10 9 8 33 33 H 1.09001 * 109.47194 * 299.99493 * 11 10 9 34 34 H 1.08992 * 109.47399 * 59.99666 * 11 10 9 35 35 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 36 36 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 37 37 H 0.96996 * 119.99309 * 179.97438 * 16 15 13 38 38 H 1.08000 * 120.46338 * 180.29800 * 21 8 7 39 39 H 1.08000 * 119.57486 * 180.02562 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 3.9937 2.7199 0.0002 7 6 4.8518 3.1755 0.9790 8 6 5.2358 4.5162 0.9728 9 7 6.0952 5.0173 1.9461 10 6 6.4910 6.4275 1.9180 11 6 7.4329 6.7162 3.0887 12 6 7.8457 8.1891 3.0597 13 6 8.7729 8.4737 4.2131 14 1 9.0406 7.6831 4.8986 15 6 9.2796 9.7433 4.3934 16 7 10.0884 9.9917 5.4004 17 14 8.8172 11.1105 3.2076 18 1 7.5949 11.7976 3.6966 19 1 9.9323 12.0872 3.1191 20 1 8.5568 10.5336 1.8642 21 6 4.7406 5.3407 -0.0376 22 6 3.8915 4.8055 -0.9829 23 7 3.5466 3.5319 -0.9394 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 3.9558 0.7809 -0.8908 28 1 3.9564 0.7804 0.8891 29 1 5.2174 2.5047 1.7423 30 1 6.4320 4.4327 2.6431 31 1 5.6040 7.0556 2.0013 32 1 7.0019 6.6428 0.9795 33 1 6.9224 6.5007 4.0274 34 1 8.3197 6.0881 3.0049 35 1 8.3561 8.4050 2.1211 36 1 6.9586 8.8169 3.1437 37 1 10.4450 10.8848 5.5269 38 1 5.0187 6.3834 -0.0790 39 1 3.5035 5.4363 -1.7691 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168433736.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:18 Heat of formation + Delta-G solvation = -62.344647 kcal Electronic energy + Delta-G solvation = -20181.857771 eV Core-core repulsion = 16896.110052 eV Total energy + Delta-G solvation = -3285.747719 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.82879 -39.95147 -37.00480 -36.45981 -33.98649 -33.04738 -32.06551 -30.00334 -29.28481 -27.44710 -26.69880 -23.61453 -23.09863 -21.96448 -20.57461 -20.34209 -17.85667 -17.41714 -17.01428 -16.75844 -16.57667 -16.12399 -15.62347 -15.11999 -14.59594 -14.25309 -14.17897 -13.96143 -13.63078 -13.46429 -13.33715 -12.73300 -12.58334 -12.30508 -12.27596 -11.99660 -11.58884 -11.13131 -11.09547 -11.02524 -10.64990 -10.59600 -10.11318 -9.91161 -9.78047 -9.37017 -9.29963 -9.03687 -8.61502 -7.75070 -6.11754 -4.10993 1.12052 1.61058 2.07703 2.50725 3.25693 3.33539 3.35783 3.40531 3.92121 4.07559 4.38335 4.59812 4.69540 4.83122 4.88833 4.95174 5.06779 5.10636 5.21744 5.23796 5.30905 5.35101 5.48275 5.49423 5.73548 5.84444 5.91738 6.07630 6.16831 6.32763 6.33060 6.65353 6.68053 7.13038 7.23225 7.27199 7.59975 7.66324 7.70096 8.15668 8.44361 8.91893 9.49894 11.01471 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.043588 B = 0.002497 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.220340 B =11210.136012 C =11503.536051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.365 6.365 3 C 0.463 3.537 4 O -0.483 6.483 5 C -0.058 4.058 6 C 0.164 3.836 7 C -0.244 4.244 8 C 0.258 3.742 9 N -0.729 5.729 10 C 0.115 3.885 11 C -0.113 4.113 12 C -0.010 4.010 13 C -0.524 4.524 14 H 0.072 0.928 15 C 0.066 3.934 16 N -0.902 5.902 17 Si 0.881 3.119 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.265 1.265 21 C -0.249 4.249 22 C 0.143 3.857 23 N -0.511 5.511 24 H 0.100 0.900 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.122 0.878 28 H 0.119 0.881 29 H 0.130 0.870 30 H 0.402 0.598 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.018 0.982 36 H 0.014 0.986 37 H 0.264 0.736 38 H 0.133 0.867 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.115 -19.148 -12.232 27.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.283 6.283 3 C 0.304 3.696 4 O -0.368 6.368 5 C -0.096 4.096 6 C 0.026 3.974 7 C -0.270 4.270 8 C 0.143 3.857 9 N -0.356 5.356 10 C -0.008 4.008 11 C -0.151 4.151 12 C -0.048 4.048 13 C -0.562 4.562 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.540 5.540 17 Si 0.708 3.292 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.190 1.190 21 C -0.275 4.275 22 C -0.014 4.014 23 N -0.224 5.224 24 H 0.118 0.882 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.140 0.860 28 H 0.137 0.863 29 H 0.148 0.852 30 H 0.237 0.763 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.037 0.963 36 H 0.032 0.968 37 H 0.074 0.926 38 H 0.151 0.849 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -15.741 -18.786 -12.780 27.641 hybrid contribution 0.393 1.105 0.489 1.271 sum -15.348 -17.681 -12.291 26.443 Atomic orbital electron populations 1.23229 0.76360 1.03485 1.02597 1.86480 1.23427 1.33656 1.84700 1.23389 0.91668 0.81397 0.73151 1.90723 1.66718 1.36108 1.43279 1.20159 0.88529 0.94169 1.06703 1.20007 0.92676 0.93757 0.90922 1.21223 1.06956 0.95018 1.03802 1.18037 0.87643 0.91884 0.88092 1.44944 1.49605 1.11612 1.29427 1.21726 0.98609 0.79981 1.00515 1.21675 0.97445 1.00352 0.95612 1.19499 0.96533 0.90878 0.97898 1.21081 1.27393 0.96653 1.11046 0.91029 1.25044 0.94582 0.98692 0.95219 1.69913 1.32512 1.21708 1.29887 0.86760 0.78246 0.81971 0.82197 1.20232 1.21308 1.18984 1.21690 1.05747 1.01398 0.98651 1.22347 0.92006 0.90956 0.96046 1.67408 1.24976 1.04839 1.25146 0.88203 0.91996 0.91897 0.85985 0.86304 0.85183 0.76259 0.92195 0.92165 0.92082 0.92034 0.96343 0.96788 0.92639 0.84913 0.83090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.32 16 2 O -0.37 -3.41 10.56 -39.25 -0.41 -3.82 16 3 C 0.46 5.14 7.89 36.01 0.28 5.42 16 4 O -0.48 -7.16 15.08 -18.75 -0.28 -7.44 16 5 C -0.06 -0.50 6.21 -29.04 -0.18 -0.68 16 6 C 0.16 1.98 5.76 -82.65 -0.48 1.50 16 7 C -0.24 -2.84 9.59 -39.24 -0.38 -3.22 16 8 C 0.26 3.37 6.70 -83.60 -0.56 2.81 16 9 N -0.73 -9.44 5.72 -58.46 -0.33 -9.77 16 10 C 0.11 1.69 4.95 -4.04 -0.02 1.67 16 11 C -0.11 -2.02 5.27 -26.73 -0.14 -2.16 16 12 C -0.01 -0.23 4.04 -27.88 -0.11 -0.34 16 13 C -0.52 -14.52 9.66 -34.44 -0.33 -14.85 16 14 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 15 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 16 N -0.90 -27.41 13.96 55.43 0.77 -26.63 16 17 Si 0.88 21.25 27.47 -169.99 -4.67 16.58 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 21 C -0.25 -3.23 9.38 -39.24 -0.37 -3.60 16 22 C 0.14 1.82 11.17 -17.61 -0.20 1.63 16 23 N -0.51 -7.10 9.22 -9.57 -0.09 -7.19 16 24 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 26 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 27 H 0.12 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.12 0.67 7.87 -51.93 -0.41 0.26 16 29 H 0.13 1.17 7.94 -52.49 -0.42 0.76 16 30 H 0.40 4.62 8.50 -40.82 -0.35 4.27 16 31 H 0.06 0.88 8.00 -51.93 -0.42 0.47 16 32 H 0.06 0.88 7.99 -51.93 -0.42 0.46 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 36 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.13 1.60 6.89 -52.49 -0.36 1.24 16 39 H 0.15 1.55 8.06 -52.49 -0.42 1.12 16 LS Contribution 334.58 15.07 5.04 5.04 Total: -1.00 -33.96 334.58 -7.16 -41.12 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -5.68 Total: 0.80 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -1.51 Total: -8.69 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.35 Total: -43.59 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: -0.70 Total: -11.26 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.96 -7.16 -41.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433736.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.227 kcal (2) G-P(sol) polarization free energy of solvation -33.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds