Wall clock time and date at job start Tue Mar 31 2020 00:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00359 * 2 1 4 4 H 1.48501 * 109.47136 * 270.00494 * 3 2 1 5 5 H 1.48500 * 109.47093 * 30.00389 * 3 2 1 6 6 H 1.48505 * 109.47135 * 150.00081 * 3 2 1 7 7 C 1.38815 * 119.99508 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99715 * 359.97438 * 7 2 1 9 9 N 1.36936 * 119.99954 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00178 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47270 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.81037 * 51.67044 * 11 10 9 13 13 C 1.54886 * 110.75976 * 288.33423 * 11 10 9 14 14 C 1.54257 * 104.19826 * 203.73985 * 13 11 10 15 15 C 1.53875 * 106.59915 * 23.61046 * 14 13 11 16 16 C 1.54273 * 106.59674 * 0.02562 * 15 14 13 17 17 H 1.08993 * 110.48847 * 95.20284 * 16 15 14 18 18 N 1.46505 * 110.48569 * 217.71231 * 16 15 14 19 19 C 1.34777 * 119.99724 * 273.54618 * 18 16 15 20 20 O 1.21603 * 120.00258 * 359.97438 * 19 18 16 21 21 C 1.47432 * 119.99549 * 179.72679 * 19 18 16 22 22 C 1.41285 * 126.41683 * 0.29489 * 21 19 18 23 23 N 1.30443 * 108.02583 * 180.02562 * 22 21 19 24 24 N 1.39940 * 108.89411 * 359.97438 * 23 22 21 25 25 H 0.96999 * 125.74923 * 180.02562 * 24 23 22 26 26 C 1.34254 * 108.49264 * 359.73388 * 24 23 22 27 27 H 0.97003 * 119.99574 * 359.97438 * 1 2 3 28 28 H 0.96996 * 119.99666 * 359.97438 * 9 7 2 29 29 H 1.09009 * 109.46623 * 60.00237 * 10 9 7 30 30 H 1.08995 * 109.47362 * 300.00856 * 10 9 7 31 31 H 1.09006 * 110.48770 * 85.05857 * 13 11 10 32 32 H 1.09003 * 110.60027 * 322.47857 * 13 11 10 33 33 H 1.08997 * 110.04140 * 264.32680 * 14 13 11 34 34 H 1.09007 * 110.03598 * 142.89156 * 14 13 11 35 35 H 1.08997 * 110.03682 * 240.71525 * 15 14 13 36 36 H 1.09001 * 110.03375 * 119.27904 * 15 14 13 37 37 H 0.97000 * 119.99792 * 93.54185 * 18 16 15 38 38 H 1.08007 * 125.98828 * 0.03541 * 22 21 19 39 39 H 1.07997 * 126.29481 * 180.30192 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4479 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3796 -1.2023 -0.0011 10 6 4.1120 -2.4711 -0.0011 11 6 5.6163 -2.1916 -0.0024 12 1 5.8822 -1.4993 0.7964 13 6 6.0717 -1.6441 -1.3777 14 6 7.5740 -1.9883 -1.4434 15 6 7.7952 -3.1746 -0.4887 16 6 6.4194 -3.5103 0.1233 17 1 5.9364 -4.3093 -0.4391 18 7 6.5633 -3.8903 1.5309 19 6 6.8329 -5.1693 1.8594 20 8 6.9562 -6.0080 0.9876 21 6 6.9836 -5.5504 3.2756 22 6 6.8682 -4.6922 4.3920 23 7 7.0681 -5.4013 5.4685 24 7 7.3168 -6.7276 5.0979 25 1 7.4969 -7.4616 5.7059 26 6 7.2579 -6.8139 3.7594 27 1 -0.4850 0.8401 0.0004 28 1 3.8646 -0.3623 -0.0014 29 1 3.8483 -3.0428 -0.8909 30 1 3.8489 -3.0425 0.8890 31 1 5.9251 -0.5650 -1.4263 32 1 5.5314 -2.1382 -2.1853 33 1 8.1676 -1.1332 -1.1201 34 1 7.8483 -2.2709 -2.4598 35 1 8.4960 -2.8953 0.2979 36 1 8.1768 -4.0329 -1.0418 37 1 6.4646 -3.2213 2.2263 38 1 6.6521 -3.6345 4.3598 39 1 7.4012 -7.7071 3.1695 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568520494.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:04 Heat of formation + Delta-G solvation = 38.407362 kcal Electronic energy + Delta-G solvation = -21291.337785 eV Core-core repulsion = 18042.251752 eV Total energy + Delta-G solvation = -3249.086033 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.57409 -39.63373 -37.81262 -34.60360 -33.66300 -31.98343 -31.52984 -30.56038 -29.02321 -27.54950 -24.69491 -23.13634 -22.22501 -21.77740 -20.53552 -20.20297 -19.64236 -18.69189 -17.55806 -16.53246 -16.11145 -15.33073 -14.93953 -14.85269 -14.51191 -14.36789 -14.11582 -13.88372 -13.36115 -13.25854 -13.06569 -12.62340 -12.35412 -11.99090 -11.63924 -11.42788 -11.05045 -11.00244 -10.76044 -10.49910 -10.41056 -10.31039 -10.15760 -10.05401 -9.86054 -9.56903 -9.17257 -8.87060 -8.84801 -7.20176 -5.74472 -3.09659 1.30465 1.94352 2.40351 3.29027 3.37741 3.40353 3.42075 3.46136 4.37263 4.54599 4.60472 4.62665 4.76816 4.93644 4.97890 5.07278 5.34493 5.42830 5.50657 5.58550 5.61523 5.69570 5.73876 5.86376 5.87924 6.03227 6.06347 6.18658 6.25885 6.35503 6.47399 6.58682 6.71973 6.76405 6.83939 7.16979 7.60601 8.02586 8.31548 8.44678 9.24136 9.96278 10.16436 11.44177 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.017220 B = 0.004296 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.586014 B = 6516.465370 C = 7501.388506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.242 4.242 8 H 0.089 0.911 9 N -0.755 5.755 10 C 0.165 3.835 11 C -0.107 4.107 12 H 0.080 0.920 13 C -0.114 4.114 14 C -0.123 4.123 15 C -0.132 4.132 16 C 0.151 3.849 17 H 0.097 0.903 18 N -0.715 5.715 19 C 0.595 3.405 20 O -0.552 6.552 21 C -0.291 4.291 22 C 0.086 3.914 23 N -0.296 5.296 24 N -0.466 5.466 25 H 0.444 0.556 26 C 0.132 3.868 27 H 0.259 0.741 28 H 0.360 0.640 29 H 0.029 0.971 30 H 0.027 0.973 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.400 0.600 38 H 0.192 0.808 39 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.867 -10.636 6.228 23.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.192 4.192 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.372 4.372 8 H 0.107 0.893 9 N -0.400 5.400 10 C 0.038 3.962 11 C -0.127 4.127 12 H 0.098 0.902 13 C -0.152 4.152 14 C -0.161 4.161 15 C -0.171 4.171 16 C 0.046 3.954 17 H 0.115 0.885 18 N -0.364 5.364 19 C 0.383 3.617 20 O -0.431 6.431 21 C -0.306 4.306 22 C -0.102 4.102 23 N -0.117 5.117 24 N -0.171 5.171 25 H 0.289 0.711 26 C -0.021 4.021 27 H 0.069 0.931 28 H 0.193 0.807 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.234 0.766 38 H 0.208 0.792 39 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 19.771 -11.277 6.871 23.776 hybrid contribution 0.465 1.197 -0.178 1.297 sum 20.237 -10.080 6.693 23.578 Atomic orbital electron populations 1.69710 1.05120 1.25753 1.57765 1.24671 0.95220 0.97161 1.02166 0.86541 0.79162 0.85020 0.77760 1.21086 1.21799 1.20371 1.19074 0.80704 0.94717 1.42735 0.89289 1.42681 1.03970 1.02172 1.91181 1.20629 0.87499 0.89252 0.98798 1.22620 0.96377 0.95316 0.98347 0.90166 1.22322 0.94588 1.01407 0.96883 1.22119 0.97086 0.97597 0.99297 1.22517 0.97185 0.98428 0.98965 1.21865 0.95315 0.97249 0.81011 0.88536 1.45810 1.72386 1.09454 1.08786 1.17201 0.75713 0.82221 0.86612 1.90763 1.51971 1.50152 1.50231 1.20375 1.21692 0.93993 0.94534 1.24157 0.96652 1.00426 0.88971 1.77182 1.23229 0.87958 1.23350 1.46247 1.55251 1.09679 1.05913 0.71145 1.23057 0.94875 0.99494 0.84690 0.93105 0.80711 0.95297 0.95498 0.91281 0.90817 0.92010 0.91861 0.91683 0.91444 0.76592 0.79161 0.79163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.54 13.97 55.49 0.78 -28.76 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 3 Si 0.88 21.97 27.73 -169.99 -4.71 17.25 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 7 C -0.24 -6.88 10.47 -15.06 -0.16 -7.04 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 9 N -0.75 -17.64 5.33 -59.91 -0.32 -17.96 16 10 C 0.17 3.14 5.70 -4.04 -0.02 3.11 16 11 C -0.11 -1.54 2.50 -88.62 -0.22 -1.76 16 12 H 0.08 1.11 8.02 -51.93 -0.42 0.69 16 13 C -0.11 -1.54 6.20 -25.08 -0.16 -1.70 16 14 C -0.12 -1.36 6.80 -25.62 -0.17 -1.54 16 15 C -0.13 -1.52 6.53 -25.61 -0.17 -1.68 16 16 C 0.15 1.96 2.61 -66.25 -0.17 1.79 16 17 H 0.10 1.44 7.57 -51.93 -0.39 1.04 16 18 N -0.71 -8.48 5.11 -53.25 -0.27 -8.75 16 19 C 0.60 7.79 7.81 -12.52 -0.10 7.69 16 20 O -0.55 -8.94 16.61 5.27 0.09 -8.85 16 21 C -0.29 -3.14 6.13 -105.07 -0.64 -3.78 16 22 C 0.09 0.85 11.50 -16.98 -0.20 0.66 16 23 N -0.30 -3.07 12.63 30.86 0.39 -2.68 16 24 N -0.47 -3.51 7.29 30.85 0.22 -3.28 16 25 H 0.44 1.72 8.96 -182.72 -1.64 0.08 16 26 C 0.13 1.11 11.82 -16.56 -0.20 0.92 16 27 H 0.26 7.77 8.31 -40.82 -0.34 7.44 16 28 H 0.36 8.14 5.53 -40.82 -0.23 7.92 16 29 H 0.03 0.57 7.99 -51.92 -0.41 0.16 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 1.05 7.94 -51.93 -0.41 0.63 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.70 8.04 -51.93 -0.42 0.29 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.40 3.93 7.48 -40.82 -0.31 3.63 16 38 H 0.19 1.39 7.50 -52.48 -0.39 0.99 16 39 H 0.19 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 327.15 15.07 4.93 4.93 Total: -1.00 -35.72 327.15 -7.94 -43.67 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -6.74 Total: 7.78 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -2.30 Total: -3.34 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: 0.80 Total: -61.43 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.71 Total: 17.25 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.72 -7.94 -43.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568520494.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.074 kcal (2) G-P(sol) polarization free energy of solvation -35.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds