Wall clock time and date at job start Tue Mar 31 2020 00:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86811 * 119.99638 * 2 1 4 4 H 1.48501 * 109.47064 * 269.99595 * 3 2 1 5 5 H 1.48496 * 109.47153 * 29.99950 * 3 2 1 6 6 H 1.48503 * 109.46733 * 149.99955 * 3 2 1 7 7 C 1.38814 * 120.00709 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00341 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99326 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99586 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46718 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.53716 * 307.60954 * 11 10 9 13 13 C 1.54886 * 110.48445 * 70.22657 * 11 10 9 14 14 C 1.54896 * 102.74589 * 156.61858 * 13 11 10 15 15 C 1.54259 * 104.19439 * 322.05486 * 14 13 11 16 16 C 1.53880 * 106.60058 * 23.61165 * 15 14 13 17 17 H 1.09004 * 110.03104 * 119.33469 * 16 15 14 18 18 N 1.46501 * 110.03017 * 240.71441 * 16 15 14 19 19 C 1.34780 * 120.00162 * 273.54700 * 18 16 15 20 20 O 1.21607 * 119.99553 * 359.97438 * 19 18 16 21 21 C 1.47421 * 119.99824 * 180.02562 * 19 18 16 22 22 C 1.41291 * 126.41924 * 359.97438 * 21 19 18 23 23 N 1.30446 * 108.02252 * 180.02562 * 22 21 19 24 24 N 1.39935 * 108.90003 * 359.74001 * 23 22 21 25 25 H 0.96998 * 125.75472 * 180.27595 * 24 23 22 26 26 C 1.34258 * 108.49136 * 0.43452 * 24 23 22 27 27 H 0.96998 * 120.00321 * 0.02562 * 1 2 3 28 28 H 0.96994 * 120.00198 * 359.97438 * 9 7 2 29 29 H 1.08997 * 109.46980 * 60.00023 * 10 9 7 30 30 H 1.08998 * 109.47131 * 299.99587 * 10 9 7 31 31 H 1.08992 * 110.76141 * 38.30396 * 13 11 10 32 32 H 1.08999 * 110.75338 * 274.93033 * 13 11 10 33 33 H 1.08999 * 110.48332 * 203.37379 * 14 13 11 34 34 H 1.09006 * 110.48395 * 80.73441 * 14 13 11 35 35 H 1.09000 * 110.03401 * 264.32450 * 15 14 13 36 36 H 1.09004 * 110.03202 * 142.89549 * 15 14 13 37 37 H 0.96997 * 120.00234 * 93.54897 * 18 16 15 38 38 H 1.07995 * 125.98296 * 0.02562 * 22 21 19 39 39 H 1.08002 * 126.29527 * 179.84921 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0017 11 6 1.0640 -4.8197 0.0021 12 1 0.3418 -4.7050 0.8103 13 6 0.3392 -4.9136 -1.3635 14 6 -0.1113 -6.3949 -1.4101 15 6 1.0601 -7.1669 -0.7687 16 6 1.8075 -6.1654 0.1292 17 1 1.7895 -6.5064 1.1644 18 7 3.1920 -6.0189 -0.3266 19 6 4.1400 -6.8701 0.1132 20 8 3.8459 -7.7594 0.8888 21 6 5.5333 -6.7223 -0.3451 22 6 6.0231 -5.7436 -1.2387 23 7 7.3026 -5.9437 -1.3948 24 7 7.6883 -7.0401 -0.6154 25 1 8.5870 -7.3984 -0.5465 26 6 6.6039 -7.5147 0.0181 27 1 -0.4850 0.8400 -0.0004 28 1 0.3557 -2.3880 0.0005 29 1 2.6842 -3.7140 0.8922 30 1 2.6856 -3.7148 -0.8878 31 1 1.0253 -4.6927 -2.1811 32 1 -0.5225 -4.2467 -1.3901 33 1 -0.2608 -6.7158 -2.4410 34 1 -1.0235 -6.5346 -0.8299 35 1 1.7276 -7.5440 -1.5436 36 1 0.6788 -7.9935 -0.1692 37 1 3.4266 -5.3093 -0.9449 38 1 5.4402 -4.9661 -1.7098 39 1 6.5752 -8.3583 0.6919 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568520499.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:14 Heat of formation + Delta-G solvation = 40.273929 kcal Electronic energy + Delta-G solvation = -21539.557853 eV Core-core repulsion = 18290.552760 eV Total energy + Delta-G solvation = -3249.005093 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.48838 -39.68368 -37.67908 -34.36805 -33.45940 -31.87140 -31.39788 -30.45742 -28.55980 -27.49473 -24.54561 -23.17058 -22.34030 -22.07018 -20.30574 -20.12714 -19.12450 -18.81372 -17.15773 -16.29644 -15.77971 -15.25625 -14.85354 -14.78029 -14.68777 -14.34665 -14.13645 -13.55480 -13.49697 -13.07218 -12.98024 -12.80389 -12.24862 -11.49397 -11.35755 -11.18145 -10.85098 -10.82620 -10.75055 -10.44354 -10.32259 -10.29469 -10.06167 -9.96323 -9.76352 -9.66870 -9.08635 -8.86189 -8.74614 -6.91361 -5.75909 -3.04379 1.38679 2.04411 2.49165 3.42222 3.44356 3.49828 3.51227 3.51826 4.48103 4.58127 4.63720 4.77196 4.88383 5.03922 5.12547 5.16552 5.50134 5.54824 5.56616 5.68931 5.76006 5.84226 5.90200 5.98042 6.10525 6.16716 6.17836 6.26189 6.34578 6.53873 6.57681 6.74596 6.79889 6.84654 6.86371 7.26536 7.70177 7.74027 8.41966 8.43196 9.54493 10.12282 10.46933 11.46927 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.014105 B = 0.004968 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.650009 B = 5634.867930 C = 7238.416990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.730 5.730 10 C 0.164 3.836 11 C -0.107 4.107 12 H 0.088 0.912 13 C -0.113 4.113 14 C -0.126 4.126 15 C -0.131 4.131 16 C 0.151 3.849 17 H 0.088 0.912 18 N -0.713 5.713 19 C 0.594 3.406 20 O -0.557 6.557 21 C -0.290 4.290 22 C 0.088 3.912 23 N -0.296 5.296 24 N -0.467 5.467 25 H 0.443 0.557 26 C 0.130 3.870 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.021 0.979 30 H 0.015 0.985 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.403 0.597 38 H 0.192 0.808 39 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.103 -17.198 -2.688 19.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.374 5.374 10 C 0.036 3.964 11 C -0.127 4.127 12 H 0.106 0.894 13 C -0.150 4.150 14 C -0.163 4.163 15 C -0.169 4.169 16 C 0.045 3.955 17 H 0.106 0.894 18 N -0.365 5.365 19 C 0.381 3.619 20 O -0.437 6.437 21 C -0.305 4.305 22 C -0.101 4.101 23 N -0.117 5.117 24 N -0.172 5.172 25 H 0.288 0.712 26 C -0.023 4.023 27 H 0.065 0.935 28 H 0.218 0.782 29 H 0.039 0.961 30 H 0.032 0.968 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.240 0.760 38 H 0.209 0.791 39 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 10.066 -17.274 -2.717 20.177 hybrid contribution 0.008 0.880 0.162 0.895 sum 10.075 -16.394 -2.555 19.411 Atomic orbital electron populations 1.69651 1.05099 1.25629 1.57764 1.24720 0.95486 0.97630 1.03015 0.86217 0.78686 0.83949 0.77505 1.21726 1.21798 1.20796 1.19216 0.91001 0.84181 1.42667 0.91240 1.42344 1.05882 0.99833 1.89332 1.20583 0.93060 0.85342 0.97392 1.22479 0.98066 0.93320 0.98793 0.89415 1.22510 1.00504 0.95274 0.96735 1.22393 0.97785 0.95935 1.00225 1.22572 0.97383 0.97980 0.99003 1.21596 0.79811 0.95332 0.98718 0.89365 1.46042 1.08394 1.33351 1.48676 1.17216 0.83531 0.81248 0.79908 1.90745 1.82567 1.34280 1.36097 1.20391 0.95374 1.03824 1.10905 1.24200 0.91856 0.98003 0.96015 1.77191 1.14734 1.03708 1.16050 1.46247 1.10381 1.24849 1.35700 0.71226 1.23034 0.86100 0.97978 0.95212 0.93531 0.78199 0.96140 0.96774 0.91453 0.90859 0.91981 0.91694 0.91550 0.91532 0.75979 0.79090 0.79246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.90 13.06 55.49 0.72 -27.18 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 7 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 9 N -0.73 -17.90 5.49 -59.90 -0.33 -18.23 16 10 C 0.16 3.12 4.72 -4.04 -0.02 3.11 16 11 C -0.11 -1.67 2.85 -88.96 -0.25 -1.92 16 12 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 13 C -0.11 -1.63 6.19 -24.74 -0.15 -1.78 16 14 C -0.13 -1.50 6.83 -25.07 -0.17 -1.67 16 15 C -0.13 -1.61 6.59 -25.61 -0.17 -1.78 16 16 C 0.15 2.09 3.10 -66.81 -0.21 1.89 16 17 H 0.09 1.33 7.60 -51.93 -0.39 0.94 16 18 N -0.71 -9.48 4.37 -53.79 -0.24 -9.72 16 19 C 0.59 8.37 7.80 -12.52 -0.10 8.27 16 20 O -0.56 -9.37 16.58 5.27 0.09 -9.28 16 21 C -0.29 -3.45 6.13 -105.07 -0.64 -4.09 16 22 C 0.09 0.99 11.50 -16.98 -0.20 0.80 16 23 N -0.30 -3.41 12.63 30.86 0.39 -3.02 16 24 N -0.47 -3.90 7.29 30.85 0.22 -3.68 16 25 H 0.44 2.04 8.96 -182.72 -1.64 0.40 16 26 C 0.13 1.20 11.82 -16.56 -0.20 1.00 16 27 H 0.25 7.39 8.31 -40.82 -0.34 7.06 16 28 H 0.38 9.94 7.64 -40.82 -0.31 9.62 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.01 0.26 6.40 -51.93 -0.33 -0.07 16 31 H 0.07 0.99 7.97 -51.93 -0.41 0.57 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.82 7.92 -51.93 -0.41 0.41 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.40 4.99 5.45 -40.82 -0.22 4.77 16 38 H 0.19 1.81 7.50 -52.49 -0.39 1.41 16 39 H 0.19 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 325.79 15.07 4.91 4.91 Total: -1.00 -33.94 325.79 -8.23 -42.16 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -6.62 Total: 10.16 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -2.35 Total: -3.37 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: 0.78 Total: -61.83 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.09 Total: -9.28 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.94 -8.23 -42.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568520499.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.438 kcal (2) G-P(sol) polarization free energy of solvation -33.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds