Wall clock time and date at job start Tue Mar 31 2020 00:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86811 * 119.99638 * 2 1 4 4 H 1.48501 * 109.47064 * 269.99595 * 3 2 1 5 5 H 1.48496 * 109.47153 * 29.99950 * 3 2 1 6 6 H 1.48503 * 109.46733 * 149.99955 * 3 2 1 7 7 C 1.38814 * 120.00709 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00341 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99326 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99586 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46718 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.53716 * 307.60954 * 11 10 9 13 13 C 1.54886 * 110.48445 * 70.22657 * 11 10 9 14 14 C 1.54896 * 102.74589 * 156.61858 * 13 11 10 15 15 C 1.54259 * 104.19439 * 322.05486 * 14 13 11 16 16 C 1.53880 * 106.60058 * 23.61165 * 15 14 13 17 17 H 1.09004 * 110.03104 * 119.33469 * 16 15 14 18 18 N 1.46501 * 110.03017 * 240.71441 * 16 15 14 19 19 C 1.34780 * 120.00162 * 273.54700 * 18 16 15 20 20 O 1.21607 * 119.99553 * 359.97438 * 19 18 16 21 21 C 1.47421 * 119.99824 * 180.02562 * 19 18 16 22 22 C 1.41291 * 126.41924 * 359.97438 * 21 19 18 23 23 N 1.30446 * 108.02252 * 180.02562 * 22 21 19 24 24 N 1.39935 * 108.90003 * 359.74001 * 23 22 21 25 25 H 0.96998 * 125.75472 * 180.27595 * 24 23 22 26 26 C 1.34258 * 108.49136 * 0.43452 * 24 23 22 27 27 H 0.96998 * 120.00321 * 0.02562 * 1 2 3 28 28 H 0.96994 * 120.00198 * 359.97438 * 9 7 2 29 29 H 1.08997 * 109.46980 * 60.00023 * 10 9 7 30 30 H 1.08998 * 109.47131 * 299.99587 * 10 9 7 31 31 H 1.08992 * 110.76141 * 38.30396 * 13 11 10 32 32 H 1.08999 * 110.75338 * 274.93033 * 13 11 10 33 33 H 1.08999 * 110.48332 * 203.37379 * 14 13 11 34 34 H 1.09006 * 110.48395 * 80.73441 * 14 13 11 35 35 H 1.09000 * 110.03401 * 264.32450 * 15 14 13 36 36 H 1.09004 * 110.03202 * 142.89549 * 15 14 13 37 37 H 0.96997 * 120.00234 * 93.54897 * 18 16 15 38 38 H 1.07995 * 125.98296 * 0.02562 * 22 21 19 39 39 H 1.08002 * 126.29527 * 179.84921 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0017 11 6 1.0640 -4.8197 0.0021 12 1 0.3418 -4.7050 0.8103 13 6 0.3392 -4.9136 -1.3635 14 6 -0.1113 -6.3949 -1.4101 15 6 1.0601 -7.1669 -0.7687 16 6 1.8075 -6.1654 0.1292 17 1 1.7895 -6.5064 1.1644 18 7 3.1920 -6.0189 -0.3266 19 6 4.1400 -6.8701 0.1132 20 8 3.8459 -7.7594 0.8888 21 6 5.5333 -6.7223 -0.3451 22 6 6.0231 -5.7436 -1.2387 23 7 7.3026 -5.9437 -1.3948 24 7 7.6883 -7.0401 -0.6154 25 1 8.5870 -7.3984 -0.5465 26 6 6.6039 -7.5147 0.0181 27 1 -0.4850 0.8400 -0.0004 28 1 0.3557 -2.3880 0.0005 29 1 2.6842 -3.7140 0.8922 30 1 2.6856 -3.7148 -0.8878 31 1 1.0253 -4.6927 -2.1811 32 1 -0.5225 -4.2467 -1.3901 33 1 -0.2608 -6.7158 -2.4410 34 1 -1.0235 -6.5346 -0.8299 35 1 1.7276 -7.5440 -1.5436 36 1 0.6788 -7.9935 -0.1692 37 1 3.4266 -5.3093 -0.9449 38 1 5.4402 -4.9661 -1.7098 39 1 6.5752 -8.3583 0.6919 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568520499.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:13 Heat of formation + Delta-G solvation = 16.032687 kcal Electronic energy + Delta-G solvation = -21540.609032 eV Core-core repulsion = 18290.552760 eV Total energy + Delta-G solvation = -3250.056272 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.31480 -40.80797 -38.87325 -36.20979 -34.55562 -33.27810 -32.68645 -31.32482 -30.14757 -28.57181 -26.30348 -24.22302 -23.95353 -22.92597 -21.37328 -21.11879 -20.41564 -19.72604 -19.05966 -17.35379 -16.94698 -16.59974 -16.17894 -15.97111 -15.60699 -15.51317 -15.29191 -15.11441 -14.87756 -14.59945 -14.36099 -13.79918 -13.51965 -13.10088 -12.81241 -12.59897 -12.29508 -12.17072 -12.10591 -11.91802 -11.76577 -11.60373 -11.49998 -11.41212 -10.87676 -10.86120 -10.84467 -10.09465 -9.71097 -8.95381 -7.91759 -5.19704 0.58614 1.15076 1.49692 1.50642 1.58914 1.81331 2.39537 2.51090 2.58548 3.41364 3.49759 3.70551 3.75085 3.92211 3.95584 4.15007 4.23871 4.41654 4.45431 4.55814 4.61208 4.62007 4.73938 4.76981 4.84771 4.93406 5.08557 5.17769 5.29499 5.31324 5.33557 5.43038 5.51253 5.56210 5.68536 6.24362 6.30538 6.47623 6.68865 7.34872 7.37636 8.13812 8.37010 9.31817 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.014105 B = 0.004968 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.650009 B = 5634.867930 C = 7238.416990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.073 4.073 3 Si 0.969 3.031 4 H -0.286 1.286 5 H -0.297 1.297 6 H -0.272 1.272 7 C -0.242 4.242 8 H 0.075 0.925 9 N -0.742 5.742 10 C 0.166 3.834 11 C -0.100 4.100 12 H 0.078 0.922 13 C -0.110 4.110 14 C -0.115 4.115 15 C -0.123 4.123 16 C 0.156 3.844 17 H 0.076 0.924 18 N -0.710 5.710 19 C 0.594 3.406 20 O -0.589 6.589 21 C -0.320 4.320 22 C 0.085 3.915 23 N -0.322 5.322 24 N -0.449 5.449 25 H 0.460 0.540 26 C 0.149 3.851 27 H 0.250 0.750 28 H 0.375 0.625 29 H 0.011 0.989 30 H 0.031 0.969 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.407 0.593 38 H 0.202 0.798 39 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.523 -18.306 -3.177 21.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.265 4.265 3 Si 0.798 3.202 4 H -0.213 1.213 5 H -0.224 1.224 6 H -0.197 1.197 7 C -0.374 4.374 8 H 0.093 0.907 9 N -0.384 5.384 10 C 0.039 3.961 11 C -0.119 4.119 12 H 0.096 0.904 13 C -0.148 4.148 14 C -0.152 4.152 15 C -0.161 4.161 16 C 0.051 3.949 17 H 0.094 0.906 18 N -0.362 5.362 19 C 0.383 3.617 20 O -0.471 6.471 21 C -0.335 4.335 22 C -0.103 4.103 23 N -0.143 5.143 24 N -0.156 5.156 25 H 0.308 0.692 26 C -0.006 4.006 27 H 0.059 0.941 28 H 0.207 0.793 29 H 0.029 0.971 30 H 0.049 0.951 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.245 0.755 38 H 0.218 0.782 39 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 11.552 -18.403 -3.226 21.967 hybrid contribution -0.350 1.147 0.342 1.247 sum 11.202 -17.256 -2.884 20.775 Atomic orbital electron populations 1.69802 1.06537 1.25959 1.59620 1.25494 0.96304 1.00873 1.03840 0.85205 0.77669 0.79827 0.77453 1.21283 1.22400 1.19697 1.19616 0.91482 0.85351 1.40957 0.90670 1.42541 1.05661 1.00994 1.89222 1.20703 0.93560 0.84473 0.97329 1.22349 0.97359 0.92849 0.99366 0.90392 1.22451 0.99672 0.96911 0.95752 1.22333 0.97803 0.93639 1.01442 1.22503 0.97258 0.97599 0.98756 1.21481 0.80270 0.94494 0.98678 0.90588 1.45991 1.08152 1.33447 1.48583 1.17482 0.84304 0.80617 0.79251 1.90721 1.83181 1.35588 1.37610 1.20348 0.94873 1.05576 1.12699 1.24386 0.91953 0.98138 0.95845 1.77144 1.14831 1.05090 1.17224 1.46260 1.11171 1.23746 1.34429 0.69163 1.23438 0.85375 0.97572 0.94174 0.94077 0.79330 0.97147 0.95137 0.91542 0.92576 0.90265 0.90928 0.91167 0.90787 0.75501 0.78172 0.76538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.76 13.06 21.65 0.28 -58.48 16 2 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 3 Si 0.97 45.87 29.55 68.60 2.03 47.89 16 4 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.24 -13.30 9.99 84.03 0.84 -12.46 16 8 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 9 N -0.74 -36.69 5.49 -343.44 -1.89 -38.57 16 10 C 0.17 6.29 4.72 86.38 0.41 6.70 16 11 C -0.10 -3.08 2.85 -9.72 -0.03 -3.11 16 12 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 13 C -0.11 -3.10 6.19 31.89 0.20 -2.91 16 14 C -0.11 -2.52 6.83 31.67 0.22 -2.30 16 15 C -0.12 -2.80 6.59 31.32 0.21 -2.60 16 16 C 0.16 4.22 3.10 45.72 0.14 4.37 16 17 H 0.08 2.27 7.60 -2.38 -0.02 2.25 16 18 N -0.71 -18.30 4.37 -442.35 -1.93 -20.23 16 19 C 0.59 16.19 7.80 86.66 0.68 16.87 16 20 O -0.59 -19.31 16.58 -4.05 -0.07 -19.38 16 21 C -0.32 -7.15 6.13 -20.15 -0.12 -7.28 16 22 C 0.08 1.81 11.50 85.65 0.99 2.80 16 23 N -0.32 -6.88 12.63 -56.28 -0.71 -7.59 16 24 N -0.45 -6.47 7.29 -56.31 -0.41 -6.88 16 25 H 0.46 3.01 8.96 -213.43 -1.91 1.10 16 26 C 0.15 2.41 11.82 84.28 1.00 3.41 16 27 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 28 H 0.37 19.78 7.64 -92.71 -0.71 19.08 16 29 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.03 1.08 6.40 -2.39 -0.02 1.07 16 31 H 0.07 1.88 7.97 -2.39 -0.02 1.86 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.07 1.58 7.92 -2.39 -0.02 1.56 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.41 9.71 5.45 -92.71 -0.51 9.20 16 38 H 0.20 3.59 7.50 -2.91 -0.02 3.57 16 39 H 0.22 2.22 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -72.15 325.79 0.25 -71.90 By element: Atomic # 1 Polarization: 33.55 SS G_CDS: -2.03 Total: 31.52 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 4.98 Total: -0.19 kcal Atomic # 7 Polarization: -127.09 SS G_CDS: -4.66 Total: -131.74 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.07 Total: -19.38 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.89 kcal Total: -72.15 0.25 -71.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568520499.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.928 kcal (2) G-P(sol) polarization free energy of solvation -72.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds