Wall clock time and date at job start Tue Mar 31 2020 00:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99927 * 2 1 4 4 H 1.48497 * 109.47117 * 269.99788 * 3 2 1 5 5 H 1.48499 * 109.47395 * 29.99975 * 3 2 1 6 6 H 1.48502 * 109.46813 * 150.00090 * 3 2 1 7 7 C 1.38810 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00138 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00012 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46877 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.49791 * 304.93448 * 11 10 9 13 13 C 1.53040 * 109.49476 * 184.83987 * 11 10 9 14 14 C 1.53079 * 109.65887 * 178.74630 * 13 11 10 15 15 C 1.53197 * 109.29191 * 61.15403 * 14 13 11 16 16 N 1.46929 * 108.89132 * 305.57598 * 15 14 13 17 17 C 1.34778 * 120.63108 * 233.51501 * 16 15 14 18 18 O 1.21599 * 119.99886 * 173.93646 * 17 16 15 19 19 C 1.47430 * 119.99948 * 353.93618 * 17 16 15 20 20 C 1.41291 * 126.41428 * 328.29666 * 19 17 16 21 21 N 1.30442 * 108.02122 * 179.97438 * 20 19 17 22 22 N 1.39935 * 108.89892 * 359.97438 * 21 20 19 23 23 H 0.97003 * 125.75760 * 180.02562 * 22 21 20 24 24 C 1.34263 * 108.49175 * 359.76067 * 22 21 20 25 25 C 1.46928 * 118.73714 * 53.54146 * 16 15 14 26 26 H 0.97009 * 119.99534 * 359.97438 * 1 2 3 27 27 H 0.97003 * 119.99439 * 0.02562 * 9 7 2 28 28 H 1.09002 * 109.46885 * 60.00235 * 10 9 7 29 29 H 1.08989 * 109.47061 * 300.00262 * 10 9 7 30 30 H 1.08991 * 109.46222 * 298.70282 * 13 11 10 31 31 H 1.09004 * 109.45951 * 58.68003 * 13 11 10 32 32 H 1.08997 * 109.39312 * 301.27980 * 14 13 11 33 33 H 1.08997 * 109.62462 * 181.16767 * 14 13 11 34 34 H 1.08994 * 109.58630 * 185.72417 * 15 14 13 35 35 H 1.09000 * 109.58666 * 65.43549 * 15 14 13 36 36 H 1.08000 * 125.98709 * 359.97438 * 20 19 17 37 37 H 1.07998 * 126.29135 * 180.24814 * 24 22 21 38 38 H 1.08997 * 109.58849 * 66.17631 * 25 16 15 39 39 H 1.08999 * 109.58627 * 186.46009 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.0637 -4.8197 0.0022 12 1 0.3804 -4.7136 0.8449 13 6 1.8244 -6.1420 0.1240 14 6 0.8312 -7.3064 0.1564 15 6 0.0297 -7.3245 -1.1490 16 7 -0.5882 -6.0061 -1.3461 17 6 -1.9141 -5.8941 -1.5601 18 8 -2.4309 -4.7947 -1.6118 19 6 -2.7380 -7.1047 -1.7313 20 6 -2.3232 -8.3272 -2.3058 21 7 -3.3345 -9.1505 -2.2764 22 7 -4.4283 -8.5042 -1.6899 23 1 -5.3057 -8.8921 -1.5463 24 6 -4.0570 -7.2583 -1.3543 25 6 0.2671 -4.8121 -1.3062 26 1 -0.4850 0.8402 0.0004 27 1 0.3555 -2.3880 0.0016 28 1 2.6853 -3.7142 0.8912 29 1 2.6840 -3.7149 -0.8887 30 1 2.4895 -6.2585 -0.7316 31 1 2.4113 -6.1402 1.0425 32 1 0.1516 -7.1790 0.9989 33 1 1.3725 -8.2464 0.2640 34 1 -0.7471 -8.0868 -1.0903 35 1 0.6954 -7.5446 -1.9835 36 1 -1.3410 -8.5421 -2.7000 37 1 -4.6771 -6.5126 -0.8792 38 1 0.9541 -4.8262 -2.1523 39 1 -0.3528 -3.9168 -1.3538 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661762425.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:01 Heat of formation + Delta-G solvation = 52.980804 kcal Electronic energy + Delta-G solvation = -21669.467873 eV Core-core repulsion = 18421.013792 eV Total energy + Delta-G solvation = -3248.454081 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -41.61923 -39.60839 -37.34315 -34.88525 -32.99338 -31.91975 -31.60597 -30.53738 -29.52517 -25.68240 -25.48325 -23.23335 -22.52482 -22.08813 -21.18707 -20.00635 -19.29690 -18.10238 -16.98102 -16.27790 -15.77029 -15.27370 -14.98043 -14.65172 -14.60545 -14.25959 -13.90436 -13.51927 -13.43207 -13.10782 -12.81277 -12.75864 -12.41535 -12.27001 -11.40981 -11.34341 -11.01994 -10.97513 -10.78133 -10.58851 -10.34189 -10.21714 -10.01788 -9.93187 -9.64434 -9.53186 -8.97930 -8.80008 -8.36236 -6.83067 -5.66349 -2.95940 1.41207 2.01191 2.46431 3.12457 3.43112 3.49646 3.54074 3.56292 4.38541 4.62300 4.65104 4.82275 4.87447 4.98581 5.09831 5.12915 5.27754 5.39976 5.42318 5.55849 5.67143 5.73443 5.87989 5.92112 6.02212 6.12249 6.17844 6.20493 6.27603 6.47090 6.62931 6.76868 6.82101 6.84643 6.95556 7.21816 7.63972 7.77788 8.43994 8.51489 9.62435 10.21072 10.55359 11.55938 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.025995 B = 0.004013 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.874761 B = 6975.853164 C = 7848.997266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.241 4.241 8 H 0.069 0.931 9 N -0.733 5.733 10 C 0.161 3.839 11 C -0.107 4.107 12 H 0.073 0.927 13 C -0.112 4.112 14 C -0.133 4.133 15 C 0.098 3.902 16 N -0.606 5.606 17 C 0.588 3.412 18 O -0.534 6.534 19 C -0.283 4.283 20 C 0.080 3.920 21 N -0.299 5.299 22 N -0.466 5.466 23 H 0.444 0.556 24 C 0.125 3.875 25 C 0.122 3.878 26 H 0.255 0.745 27 H 0.385 0.615 28 H 0.021 0.979 29 H 0.019 0.981 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.194 0.806 37 H 0.191 0.809 38 H 0.065 0.935 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.731 -21.778 -2.146 22.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.373 4.373 8 H 0.087 0.913 9 N -0.378 5.378 10 C 0.032 3.968 11 C -0.126 4.126 12 H 0.092 0.908 13 C -0.150 4.150 14 C -0.171 4.171 15 C -0.026 4.026 16 N -0.339 5.339 17 C 0.376 3.624 18 O -0.411 6.411 19 C -0.298 4.298 20 C -0.108 4.108 21 N -0.120 5.120 22 N -0.172 5.172 23 H 0.288 0.712 24 C -0.027 4.027 25 C 0.000 4.000 26 H 0.065 0.935 27 H 0.220 0.780 28 H 0.039 0.961 29 H 0.037 0.963 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.210 0.790 37 H 0.208 0.792 38 H 0.084 0.916 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.270 -22.225 -2.477 22.975 hybrid contribution 0.066 1.539 0.325 1.574 sum -5.204 -20.686 -2.152 21.439 Atomic orbital electron populations 1.69684 1.05041 1.25563 1.57479 1.24752 0.95484 0.97630 1.03066 0.86213 0.78599 0.84031 0.77471 1.21762 1.21835 1.20839 1.19209 0.90962 0.84219 1.42877 0.91257 1.42426 1.05987 0.99937 1.89448 1.20632 0.92985 0.85209 0.97931 1.21674 0.97927 0.95027 0.97993 0.90811 1.21527 0.97484 0.93803 1.02222 1.21913 0.98554 0.99001 0.97655 1.22050 0.97507 0.85180 0.97814 1.47939 1.06808 1.07907 1.71229 1.17308 0.81308 0.87445 0.76382 1.90853 1.71782 1.27449 1.50974 1.20386 0.95507 0.97289 1.16581 1.24233 0.98487 0.90384 0.97688 1.77136 0.94286 1.21327 1.19288 1.46188 1.13297 1.10249 1.47467 0.71197 1.23045 0.95382 0.88004 0.96235 1.21720 0.93212 0.87970 0.97071 0.93525 0.78031 0.96136 0.96275 0.91786 0.91630 0.91621 0.90972 0.89270 0.91438 0.78972 0.79240 0.91635 0.87784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.18 13.06 55.49 0.72 -28.45 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.96 29.55 -169.99 -5.02 17.94 16 4 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -19.15 5.38 -59.91 -0.32 -19.47 16 10 C 0.16 3.26 5.65 -4.04 -0.02 3.24 16 11 C -0.11 -1.76 2.38 -90.50 -0.22 -1.97 16 12 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 13 C -0.11 -1.38 5.16 -26.67 -0.14 -1.51 16 14 C -0.13 -1.34 6.09 -26.59 -0.16 -1.50 16 15 C 0.10 0.99 5.24 -3.71 -0.02 0.97 16 16 N -0.61 -8.65 2.97 -174.04 -0.52 -9.17 16 17 C 0.59 9.32 7.61 -12.52 -0.10 9.22 16 18 O -0.53 -10.96 16.45 5.28 0.09 -10.87 16 19 C -0.28 -3.42 5.47 -105.07 -0.57 -3.99 16 20 C 0.08 0.80 9.57 -16.98 -0.16 0.64 16 21 N -0.30 -3.06 12.63 30.86 0.39 -2.67 16 22 N -0.47 -3.73 7.29 30.85 0.22 -3.50 16 23 H 0.44 1.91 8.96 -182.72 -1.64 0.28 16 24 C 0.13 1.21 11.95 -16.56 -0.20 1.01 16 25 C 0.12 2.07 5.52 -3.71 -0.02 2.05 16 26 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 27 H 0.39 10.78 6.89 -40.82 -0.28 10.50 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.02 0.39 8.14 -51.94 -0.42 -0.03 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 0.78 4.32 -51.93 -0.22 0.56 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.19 1.45 6.66 -52.49 -0.35 1.10 16 37 H 0.19 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.10 2.22 6.20 -51.93 -0.32 1.90 16 LS Contribution 319.31 15.07 4.81 4.81 Total: -1.00 -36.21 319.31 -8.07 -44.28 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.59 Total: 6.55 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -1.85 Total: 0.56 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: 0.50 Total: -63.27 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -36.21 -8.07 -44.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661762425.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.259 kcal (2) G-P(sol) polarization free energy of solvation -36.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds