Wall clock time and date at job start Tue Mar 31 2020 00:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99994 * 2 1 4 4 H 1.48500 * 109.47158 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.46930 * 300.00182 * 3 2 1 6 6 H 1.48500 * 109.46884 * 60.00007 * 3 2 1 7 7 C 1.38811 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00009 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00318 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00094 * 186.53630 * 9 7 2 11 11 C 1.52998 * 110.54249 * 58.61966 * 10 9 7 12 12 N 1.46502 * 109.46917 * 57.61629 * 11 10 9 13 13 C 1.34779 * 120.00128 * 175.54330 * 12 11 10 14 14 O 1.21573 * 119.99616 * 0.02562 * 13 12 11 15 15 C 1.47711 * 120.00041 * 180.02562 * 13 12 11 16 16 C 1.41501 * 126.51798 * 179.97438 * 15 13 12 17 17 C 1.35365 * 105.50214 * 180.02562 * 16 15 13 18 18 N 1.35032 * 107.22986 * 359.97438 * 17 16 15 19 19 H 0.96995 * 124.88278 * 180.02562 * 18 17 16 20 20 N 1.28472 * 110.22963 * 359.72928 * 18 17 16 21 21 C 1.54896 * 110.48399 * 296.00869 * 10 9 7 22 22 C 1.54885 * 102.74681 * 279.26366 * 21 10 9 23 23 C 1.54268 * 104.19794 * 322.05817 * 22 21 10 24 24 C 1.53873 * 106.59729 * 23.61146 * 23 22 21 25 25 H 0.96996 * 119.99889 * 359.97438 * 1 2 3 26 26 H 0.96999 * 119.99516 * 6.53160 * 9 7 2 27 27 H 1.08994 * 109.47636 * 177.61646 * 11 10 9 28 28 H 1.09001 * 109.47425 * 297.62329 * 11 10 9 29 29 H 0.97001 * 120.00062 * 355.53895 * 12 11 10 30 30 H 1.08001 * 127.24564 * 359.97438 * 16 15 13 31 31 H 1.08001 * 126.38352 * 179.97438 * 17 16 15 32 32 H 1.08993 * 110.75434 * 37.58071 * 21 10 9 33 33 H 1.09002 * 110.75359 * 160.95362 * 21 10 9 34 34 H 1.09006 * 110.48728 * 203.38295 * 22 21 10 35 35 H 1.09003 * 110.48825 * 80.74181 * 22 21 10 36 36 H 1.09003 * 110.03115 * 264.32554 * 23 22 21 37 37 H 1.09004 * 110.03015 * 142.89304 * 23 22 21 38 38 H 1.08999 * 110.03144 * 240.71244 * 24 23 22 39 39 H 1.09000 * 110.03138 * 119.28619 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0509 -3.6527 0.1455 11 6 2.8396 -3.6720 1.4564 12 7 1.9234 -3.4645 2.5806 13 6 2.3828 -3.5325 3.8458 14 8 3.5577 -3.7655 4.0541 15 6 1.4590 -3.3240 4.9793 16 6 1.7905 -3.3645 6.3543 17 6 0.6337 -3.1186 7.0128 18 7 -0.3273 -2.9420 6.0808 19 1 -1.2584 -2.7500 6.2735 20 7 0.1701 -3.0587 4.9021 21 6 2.9975 -3.8759 -1.0600 22 6 2.0414 -4.4237 -2.1485 23 6 1.0682 -5.3355 -1.3731 24 6 1.0742 -4.8452 0.0855 25 1 -0.4850 0.8400 0.0004 26 1 0.3603 -2.3908 -0.0954 27 1 3.3377 -4.6351 1.5667 28 1 3.5849 -2.8767 1.4438 29 1 0.9861 -3.2782 2.4144 30 1 2.7619 -3.5529 6.7872 31 1 0.5036 -3.0722 8.0840 32 1 3.4463 -2.9349 -1.3781 33 1 3.7664 -4.6092 -0.8167 34 1 2.5964 -5.0002 -2.8887 35 1 1.5003 -3.6073 -2.6269 36 1 1.4078 -6.3702 -1.4206 37 1 0.0649 -5.2517 -1.7910 38 1 1.4167 -5.6420 0.7458 39 1 0.0739 -4.5236 0.3754 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753660657.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:07 Heat of formation + Delta-G solvation = 17.391999 kcal Electronic energy + Delta-G solvation = -22060.693591 eV Core-core repulsion = 18810.696263 eV Total energy + Delta-G solvation = -3249.997328 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.52537 -40.65542 -39.40708 -35.54171 -35.09497 -32.94394 -32.26405 -31.60282 -29.57465 -29.50000 -26.48472 -25.36713 -24.02380 -22.54082 -21.51358 -20.79242 -20.12891 -19.40870 -18.91477 -18.01667 -17.23512 -16.71970 -16.52220 -16.13378 -15.79521 -15.57492 -15.19183 -15.05618 -14.59607 -14.38507 -13.98514 -13.92967 -13.45703 -13.12152 -12.94063 -12.41322 -12.30464 -12.25393 -11.93749 -11.89929 -11.71842 -11.58810 -11.40520 -11.23452 -11.16442 -10.84629 -10.46494 -10.12589 -9.87999 -8.93785 -7.89831 -5.15317 0.58837 1.27997 1.42369 1.45149 1.52348 2.01581 2.39768 2.49416 2.57461 3.41277 3.53404 3.78005 3.84154 3.95019 4.10472 4.14347 4.29468 4.47153 4.61976 4.68452 4.76176 4.80197 4.82703 4.88399 5.00383 5.07242 5.14251 5.22285 5.23811 5.37844 5.41746 5.49062 5.56607 5.63194 5.70944 6.22138 6.33544 6.58312 6.94712 7.24484 7.40773 8.14612 8.39222 9.32803 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.012447 B = 0.006665 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.009763 B = 4200.057710 C = 5500.124631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.067 4.067 3 Si 0.950 3.050 4 H -0.274 1.274 5 H -0.294 1.294 6 H -0.301 1.301 7 C -0.212 4.212 8 H 0.065 0.935 9 N -0.710 5.710 10 C 0.182 3.818 11 C 0.124 3.876 12 N -0.686 5.686 13 C 0.589 3.411 14 O -0.582 6.582 15 C -0.043 4.043 16 C -0.209 4.209 17 C 0.016 3.984 18 N -0.368 5.368 19 H 0.463 0.537 20 N -0.281 5.281 21 C -0.128 4.128 22 C -0.109 4.109 23 C -0.112 4.112 24 C -0.117 4.117 25 H 0.246 0.754 26 H 0.375 0.625 27 H 0.073 0.927 28 H 0.036 0.964 29 H 0.408 0.592 30 H 0.166 0.834 31 H 0.239 0.761 32 H 0.047 0.953 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.042 0.958 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.606 -11.346 9.945 15.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.259 4.259 3 Si 0.782 3.218 4 H -0.199 1.199 5 H -0.221 1.221 6 H -0.229 1.229 7 C -0.345 4.345 8 H 0.083 0.917 9 N -0.350 5.350 10 C 0.091 3.909 11 C -0.002 4.002 12 N -0.334 5.334 13 C 0.374 3.626 14 O -0.461 6.461 15 C -0.203 4.203 16 C -0.238 4.238 17 C -0.129 4.129 18 N -0.085 5.085 19 H 0.311 0.689 20 N -0.119 5.119 21 C -0.168 4.168 22 C -0.147 4.147 23 C -0.149 4.149 24 C -0.155 4.155 25 H 0.055 0.945 26 H 0.208 0.792 27 H 0.091 0.909 28 H 0.055 0.945 29 H 0.244 0.756 30 H 0.183 0.817 31 H 0.255 0.745 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.463 -11.239 9.277 14.647 hybrid contribution -0.115 1.626 0.428 1.685 sum -1.578 -9.613 9.706 13.752 Atomic orbital electron populations 1.69781 1.05921 1.25260 1.60141 1.25257 0.96117 0.99942 1.04627 0.85401 0.78336 0.81728 0.76346 1.19909 1.22118 1.22940 1.19305 0.90882 0.84978 1.39287 0.91670 1.42457 1.05848 1.00177 1.86515 1.20900 0.92263 0.86518 0.91230 1.21812 0.92225 0.99714 0.86408 1.45680 1.13847 1.69253 1.04656 1.17346 0.86246 0.76545 0.82432 1.90696 1.17557 1.52328 1.85559 1.21977 0.91396 1.11292 0.95631 1.22063 1.01447 1.09601 0.90641 1.23620 0.86970 1.03573 0.98764 1.43526 1.13009 1.49837 1.02121 0.68908 1.73584 1.10975 1.18815 1.08478 1.22846 0.97800 1.00160 0.96040 1.22157 0.96968 0.98242 0.97314 1.22045 0.99458 0.99564 0.93873 1.22332 0.98632 0.96430 0.98153 0.94456 0.79193 0.90874 0.94549 0.75582 0.81679 0.74501 0.93372 0.90280 0.90384 0.93883 0.89896 0.92149 0.90304 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.37 13.07 21.65 0.28 -57.08 16 2 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 3 Si 0.95 47.26 29.55 68.60 2.03 49.29 16 4 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.29 -14.52 7.11 99.48 0.71 -13.82 16 6 H -0.30 -15.27 7.11 99.48 0.71 -14.56 16 7 C -0.21 -11.39 8.59 84.03 0.72 -10.67 16 8 H 0.07 3.53 7.13 -2.91 -0.02 3.50 16 9 N -0.71 -33.32 4.70 -298.49 -1.40 -34.73 16 10 C 0.18 6.79 0.52 4.68 0.00 6.79 16 11 C 0.12 4.85 4.29 86.38 0.37 5.22 16 12 N -0.69 -27.34 5.24 -466.10 -2.44 -29.79 16 13 C 0.59 23.89 7.83 86.75 0.68 24.57 16 14 O -0.58 -26.11 16.93 -3.94 -0.07 -26.17 16 15 C -0.04 -1.49 7.13 42.46 0.30 -1.19 16 16 C -0.21 -5.49 10.81 22.41 0.24 -5.25 16 17 C 0.02 0.26 12.02 83.54 1.00 1.26 16 18 N -0.37 -7.29 6.83 -57.51 -0.39 -7.68 16 19 H 0.46 5.20 8.96 -220.00 -1.97 3.23 16 20 N -0.28 -8.74 11.92 -48.18 -0.57 -9.31 16 21 C -0.13 -4.37 5.90 31.89 0.19 -4.19 16 22 C -0.11 -3.29 6.79 31.67 0.22 -3.08 16 23 C -0.11 -3.00 6.80 31.32 0.21 -2.79 16 24 C -0.12 -3.62 5.70 31.32 0.18 -3.44 16 25 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 26 H 0.38 19.07 7.50 -92.71 -0.69 18.38 16 27 H 0.07 2.60 8.08 -2.39 -0.02 2.58 16 28 H 0.04 1.62 7.52 -2.39 -0.02 1.61 16 29 H 0.41 16.66 7.79 -92.71 -0.72 15.94 16 30 H 0.17 4.01 8.06 -2.91 -0.02 3.99 16 31 H 0.24 1.14 8.06 -2.91 -0.02 1.11 16 32 H 0.05 1.88 7.19 -2.39 -0.02 1.87 16 33 H 0.08 2.30 8.06 -2.39 -0.02 2.28 16 34 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 38 H 0.08 2.18 7.80 -2.39 -0.02 2.16 16 39 H 0.06 1.86 7.76 -2.39 -0.02 1.84 16 Total: -1.00 -73.13 326.22 -0.28 -73.41 By element: Atomic # 1 Polarization: 40.45 SS G_CDS: -2.30 Total: 38.15 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 4.58 Total: 3.92 kcal Atomic # 7 Polarization: -134.06 SS G_CDS: -4.53 Total: -138.59 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.07 Total: -26.17 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -73.13 -0.28 -73.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753660657.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.800 kcal (2) G-P(sol) polarization free energy of solvation -73.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds