Wall clock time and date at job start Tue Mar 31 2020 00:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35371 * 126.38194 * 2 1 4 4 C 1.41508 * 105.49994 * 180.02562 * 3 2 1 5 5 C 1.47706 * 126.51424 * 179.97438 * 4 3 2 6 6 O 1.21573 * 120.00532 * 359.97438 * 5 4 3 7 7 N 1.34781 * 120.00041 * 180.02562 * 5 4 3 8 8 C 1.46496 * 120.00202 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.47185 * 179.97438 * 8 7 5 10 10 N 1.46497 * 109.47408 * 179.97438 * 9 8 7 11 11 C 1.36934 * 120.00225 * 270.00200 * 10 9 8 12 12 H 1.07994 * 120.00403 * 144.92563 * 11 10 9 13 13 C 1.38813 * 119.99629 * 324.92126 * 11 10 9 14 14 N 1.31619 * 120.00132 * 337.94221 * 13 11 10 15 15 Si 1.86800 * 119.99767 * 157.93961 * 13 11 10 16 16 H 1.48498 * 109.47225 * 89.99942 * 15 13 11 17 17 H 1.48507 * 109.47096 * 210.00035 * 15 13 11 18 18 H 1.48499 * 109.47334 * 329.99980 * 15 13 11 19 19 C 1.46501 * 119.99922 * 89.99199 * 10 9 8 20 20 C 1.53000 * 117.50198 * 183.23847 * 19 10 9 21 21 C 1.53009 * 117.49540 * 114.58089 * 19 10 9 22 22 N 1.31803 * 106.96528 * 0.02562 * 4 3 2 23 23 N 1.28476 * 110.07286 * 359.97438 * 22 4 3 24 24 H 0.97002 * 124.88073 * 180.02562 * 23 22 4 25 25 H 1.08997 * 109.47404 * 89.99964 * 1 2 3 26 26 H 1.09005 * 109.46986 * 210.00188 * 1 2 3 27 27 H 1.09004 * 109.47686 * 329.99859 * 1 2 3 28 28 H 1.07999 * 127.25073 * 359.76413 * 3 2 1 29 29 H 0.97000 * 119.99632 * 359.97438 * 7 5 4 30 30 H 1.08998 * 109.46590 * 299.99212 * 8 7 5 31 31 H 1.08999 * 109.47619 * 59.99050 * 8 7 5 32 32 H 1.09004 * 109.46929 * 299.99751 * 9 8 7 33 33 H 1.08999 * 109.47331 * 59.99225 * 9 8 7 34 34 H 0.97003 * 120.00035 * 176.06976 * 14 13 11 35 35 H 1.09001 * 115.55426 * 328.91765 * 19 10 9 36 36 H 1.09001 * 117.49381 * 0.02562 * 20 19 10 37 37 H 1.09002 * 117.50141 * 145.02450 * 20 19 10 38 38 H 1.08995 * 117.49868 * 214.98810 * 21 19 10 39 39 H 1.08999 * 117.49250 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3099 1.0898 0.0000 4 6 3.6320 0.5854 -0.0006 5 6 4.8763 1.3813 -0.0014 6 8 4.8212 2.5958 -0.0020 7 7 6.0730 0.7612 -0.0024 8 6 7.3071 1.5505 -0.0026 9 6 8.5140 0.6101 -0.0032 10 7 9.7482 1.3993 -0.0040 11 6 10.3243 1.7682 -1.1903 12 1 10.8206 2.7235 -1.2756 13 6 10.2704 0.9139 -2.2831 14 7 10.0763 -0.3752 -2.1019 15 14 10.4734 1.5941 -4.0110 16 1 11.9108 1.5780 -4.3837 17 1 9.7050 0.7560 -4.9663 18 1 9.9657 2.9889 -4.0568 19 6 10.3659 1.7943 1.2643 20 6 11.6107 2.6814 1.1979 21 6 11.7405 1.2083 1.5932 22 7 3.5420 -0.7295 -0.0015 23 7 2.3080 -1.0870 -0.0009 24 1 1.9966 -2.0057 -0.0010 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5139 28 1 2.0056 2.1261 -0.0035 29 1 6.1170 -0.2078 -0.0023 30 1 7.3358 2.1795 -0.8923 31 1 7.3369 2.1787 0.8876 32 1 8.4851 -0.0188 0.8867 33 1 8.4845 -0.0185 -0.8933 34 1 9.9817 -0.9637 -2.8671 35 1 9.6764 1.9559 2.0929 36 1 11.9698 2.9715 0.2104 37 1 11.7403 3.4264 1.9829 38 1 11.9554 0.9847 2.6381 39 1 12.1849 0.5286 0.8661 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663705708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:00 Heat of formation + Delta-G solvation = 82.254431 kcal Electronic energy + Delta-G solvation = -21066.875954 eV Core-core repulsion = 17819.691273 eV Total energy + Delta-G solvation = -3247.184682 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.71970 -38.90191 -37.05695 -34.68237 -33.26854 -32.82118 -31.91741 -30.69137 -27.86091 -27.08279 -24.72717 -23.48784 -21.59087 -21.32898 -21.16583 -19.86410 -19.54418 -17.76115 -16.83287 -16.05194 -15.94275 -15.49648 -15.22276 -14.61918 -14.43338 -13.97500 -13.83263 -13.61699 -13.28183 -13.22979 -12.65051 -12.60997 -12.44229 -11.89247 -11.52623 -11.01534 -10.91777 -10.70129 -10.69265 -10.29875 -10.10205 -9.87129 -9.72070 -9.61148 -9.43237 -9.26575 -9.06079 -8.51554 -8.41128 -6.61058 -5.82142 -3.42185 1.62821 2.05054 2.74009 3.35159 3.43604 3.48500 3.60195 3.70551 4.42801 4.49999 4.50602 4.79418 4.94881 5.14198 5.28404 5.33364 5.44564 5.46847 5.55573 5.79771 5.93074 6.07179 6.16043 6.23483 6.29711 6.36008 6.52075 6.57874 6.64742 6.85214 6.92082 7.02316 7.10569 7.23802 7.58139 7.72340 7.79349 8.06607 8.44282 8.62164 9.11502 9.74568 10.29407 11.14337 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019943 B = 0.003979 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.690812 B = 7035.571794 C = 7728.035705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.007 3.993 3 C -0.180 4.180 4 C -0.002 4.002 5 C 0.594 3.406 6 O -0.540 6.540 7 N -0.705 5.705 8 C 0.099 3.901 9 C 0.136 3.864 10 N -0.547 5.547 11 C -0.259 4.259 12 H 0.068 0.932 13 C 0.012 3.988 14 N -0.883 5.883 15 Si 0.896 3.104 16 H -0.285 1.285 17 H -0.288 1.288 18 H -0.276 1.276 19 C 0.119 3.881 20 C -0.195 4.195 21 C -0.220 4.220 22 N -0.258 5.258 23 N -0.384 5.384 24 H 0.443 0.557 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.162 0.838 29 H 0.404 0.596 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.032 0.968 33 H 0.106 0.894 34 H 0.255 0.745 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.728 -2.903 5.340 17.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.119 4.119 3 C -0.208 4.208 4 C -0.164 4.164 5 C 0.377 3.623 6 O -0.416 6.416 7 N -0.355 5.355 8 C -0.026 4.026 9 C 0.009 3.991 10 N -0.264 5.264 11 C -0.388 4.388 12 H 0.086 0.914 13 C -0.188 4.188 14 N -0.526 5.526 15 Si 0.724 3.276 16 H -0.212 1.212 17 H -0.214 1.214 18 H -0.201 1.201 19 C 0.010 3.990 20 C -0.233 4.233 21 C -0.261 4.261 22 N -0.094 5.094 23 N -0.098 5.098 24 H 0.287 0.713 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.105 0.895 28 H 0.179 0.821 29 H 0.238 0.762 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.124 0.876 34 H 0.065 0.935 35 H 0.106 0.894 36 H 0.116 0.884 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.012 -3.081 5.192 17.113 hybrid contribution -0.455 -0.037 -0.928 1.034 sum -16.468 -3.118 4.265 17.294 Atomic orbital electron populations 1.20331 0.86643 1.03859 1.03309 1.21438 0.95325 0.87290 1.07843 1.21546 0.90583 0.99716 1.08937 1.22153 0.95576 0.89633 1.09033 1.16924 0.81780 0.86434 0.77131 1.90776 1.86838 1.12923 1.51040 1.45960 1.05644 1.11065 1.72808 1.22370 0.82832 0.95912 1.01521 1.21102 0.82589 0.92573 1.02833 1.43229 1.21712 1.61447 1.00021 1.19080 1.33443 0.98767 0.87539 0.91431 1.25118 1.00216 0.94322 0.99193 1.70031 1.50822 1.01868 1.29833 0.86419 0.77784 0.78857 0.84493 1.21196 1.21433 1.20124 1.21239 0.86943 1.00514 0.90266 1.23039 1.05193 0.92970 1.02124 1.23357 1.07036 0.96120 0.99607 1.73597 1.01340 1.15226 1.19190 1.43308 1.03033 1.09438 1.54065 0.71300 0.90347 0.91205 0.89542 0.82080 0.76190 0.91351 0.92922 0.94931 0.87617 0.93505 0.89438 0.88424 0.90694 0.91201 0.88996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.44 36.00 0.38 -0.05 16 2 C 0.01 0.06 7.23 -82.21 -0.59 -0.53 16 3 C -0.18 -2.34 10.73 -39.36 -0.42 -2.76 16 4 C 0.00 -0.04 7.13 -82.77 -0.59 -0.63 16 5 C 0.59 11.19 7.83 -12.39 -0.10 11.09 16 6 O -0.54 -11.74 16.93 5.30 0.09 -11.65 16 7 N -0.70 -13.04 5.55 -61.30 -0.34 -13.38 16 8 C 0.10 2.07 6.00 -4.04 -0.02 2.05 16 9 C 0.14 3.09 5.45 -4.04 -0.02 3.07 16 10 N -0.55 -13.42 2.78 -165.66 -0.46 -13.88 16 11 C -0.26 -6.92 8.63 -15.06 -0.13 -7.05 16 12 H 0.07 1.81 6.55 -52.49 -0.34 1.47 16 13 C 0.01 0.32 4.96 -17.43 -0.09 0.23 16 14 N -0.88 -24.67 11.33 55.49 0.63 -24.05 16 15 Si 0.90 21.51 29.61 -169.99 -5.03 16.48 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 C 0.12 2.57 6.56 -67.93 -0.45 2.12 16 20 C -0.19 -3.89 9.80 -26.69 -0.26 -4.15 16 21 C -0.22 -4.51 10.36 -26.69 -0.28 -4.78 16 22 N -0.26 -3.56 11.92 33.42 0.40 -3.16 16 23 N -0.38 -3.76 6.83 33.50 0.23 -3.53 16 24 H 0.44 2.56 8.96 -190.43 -1.71 0.85 16 25 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.16 1.94 8.06 -52.49 -0.42 1.52 16 29 H 0.40 6.83 8.20 -40.82 -0.33 6.49 16 30 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 31 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.03 0.69 8.07 -51.93 -0.42 0.28 16 33 H 0.11 2.69 5.35 -51.93 -0.28 2.41 16 34 H 0.25 6.90 8.32 -40.82 -0.34 6.56 16 35 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 36 H 0.10 2.11 6.37 -51.93 -0.33 1.78 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.09 2.14 8.14 -51.93 -0.42 1.71 16 LS Contribution 334.54 15.07 5.04 5.04 Total: -1.00 -32.33 334.54 -8.80 -41.13 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -6.78 Total: 8.39 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -2.57 Total: -1.39 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: 0.46 Total: -58.00 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.09 Total: -11.65 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.33 -8.80 -41.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663705708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.380 kcal (2) G-P(sol) polarization free energy of solvation -32.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds