Wall clock time and date at job start Tue Mar 31 2020 00:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35371 * 126.38194 * 2 1 4 4 C 1.41508 * 105.49994 * 180.02562 * 3 2 1 5 5 C 1.47706 * 126.51424 * 179.97438 * 4 3 2 6 6 O 1.21573 * 120.00532 * 359.97438 * 5 4 3 7 7 N 1.34781 * 120.00041 * 180.02562 * 5 4 3 8 8 C 1.46496 * 120.00202 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.47185 * 179.97438 * 8 7 5 10 10 N 1.46497 * 109.47408 * 179.97438 * 9 8 7 11 11 C 1.36934 * 120.00225 * 270.00200 * 10 9 8 12 12 H 1.07994 * 120.00403 * 144.92563 * 11 10 9 13 13 C 1.38813 * 119.99629 * 324.92126 * 11 10 9 14 14 N 1.31619 * 120.00132 * 337.94221 * 13 11 10 15 15 Si 1.86800 * 119.99767 * 157.93961 * 13 11 10 16 16 H 1.48498 * 109.47225 * 89.99942 * 15 13 11 17 17 H 1.48507 * 109.47096 * 210.00035 * 15 13 11 18 18 H 1.48499 * 109.47334 * 329.99980 * 15 13 11 19 19 C 1.46501 * 119.99922 * 89.99199 * 10 9 8 20 20 C 1.53000 * 117.50198 * 183.23847 * 19 10 9 21 21 C 1.53009 * 117.49540 * 114.58089 * 19 10 9 22 22 N 1.31803 * 106.96528 * 0.02562 * 4 3 2 23 23 N 1.28476 * 110.07286 * 359.97438 * 22 4 3 24 24 H 0.97002 * 124.88073 * 180.02562 * 23 22 4 25 25 H 1.08997 * 109.47404 * 89.99964 * 1 2 3 26 26 H 1.09005 * 109.46986 * 210.00188 * 1 2 3 27 27 H 1.09004 * 109.47686 * 329.99859 * 1 2 3 28 28 H 1.07999 * 127.25073 * 359.76413 * 3 2 1 29 29 H 0.97000 * 119.99632 * 359.97438 * 7 5 4 30 30 H 1.08998 * 109.46590 * 299.99212 * 8 7 5 31 31 H 1.08999 * 109.47619 * 59.99050 * 8 7 5 32 32 H 1.09004 * 109.46929 * 299.99751 * 9 8 7 33 33 H 1.08999 * 109.47331 * 59.99225 * 9 8 7 34 34 H 0.97003 * 120.00035 * 176.06976 * 14 13 11 35 35 H 1.09001 * 115.55426 * 328.91765 * 19 10 9 36 36 H 1.09001 * 117.49381 * 0.02562 * 20 19 10 37 37 H 1.09002 * 117.50141 * 145.02450 * 20 19 10 38 38 H 1.08995 * 117.49868 * 214.98810 * 21 19 10 39 39 H 1.08999 * 117.49250 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3099 1.0898 0.0000 4 6 3.6320 0.5854 -0.0006 5 6 4.8763 1.3813 -0.0014 6 8 4.8212 2.5958 -0.0020 7 7 6.0730 0.7612 -0.0024 8 6 7.3071 1.5505 -0.0026 9 6 8.5140 0.6101 -0.0032 10 7 9.7482 1.3993 -0.0040 11 6 10.3243 1.7682 -1.1903 12 1 10.8206 2.7235 -1.2756 13 6 10.2704 0.9139 -2.2831 14 7 10.0763 -0.3752 -2.1019 15 14 10.4734 1.5941 -4.0110 16 1 11.9108 1.5780 -4.3837 17 1 9.7050 0.7560 -4.9663 18 1 9.9657 2.9889 -4.0568 19 6 10.3659 1.7943 1.2643 20 6 11.6107 2.6814 1.1979 21 6 11.7405 1.2083 1.5932 22 7 3.5420 -0.7295 -0.0015 23 7 2.3080 -1.0870 -0.0009 24 1 1.9966 -2.0057 -0.0010 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5139 28 1 2.0056 2.1261 -0.0035 29 1 6.1170 -0.2078 -0.0023 30 1 7.3358 2.1795 -0.8923 31 1 7.3369 2.1787 0.8876 32 1 8.4851 -0.0188 0.8867 33 1 8.4845 -0.0185 -0.8933 34 1 9.9817 -0.9637 -2.8671 35 1 9.6764 1.9559 2.0929 36 1 11.9698 2.9715 0.2104 37 1 11.7403 3.4264 1.9829 38 1 11.9554 0.9847 2.6381 39 1 12.1849 0.5286 0.8661 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663705708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:00 Heat of formation + Delta-G solvation = 59.691807 kcal Electronic energy + Delta-G solvation = -21067.854343 eV Core-core repulsion = 17819.691273 eV Total energy + Delta-G solvation = -3248.163070 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.67833 -40.43758 -38.82321 -36.33933 -35.01488 -33.71465 -33.01210 -32.48943 -29.52750 -27.86539 -26.53612 -24.96660 -23.24691 -22.83241 -22.22309 -21.59157 -21.05415 -18.65975 -18.38584 -17.72519 -17.29173 -16.98165 -16.91262 -16.21628 -16.11795 -15.58393 -15.00411 -14.78956 -14.48981 -14.40254 -14.00502 -13.77113 -13.68052 -13.28681 -13.07449 -12.93385 -12.60761 -12.52066 -12.15214 -11.93794 -11.87979 -11.69334 -11.39015 -11.31905 -10.91397 -10.51969 -10.48844 -10.03304 -9.92586 -8.58362 -7.84805 -5.48613 0.48531 1.11762 1.41903 1.46088 1.55245 1.86949 2.24537 2.33960 2.49873 3.13412 3.35195 3.40969 3.58631 3.82401 4.07353 4.29948 4.34558 4.36615 4.48025 4.54092 4.60276 4.62601 4.78529 4.82109 4.94900 5.03517 5.04073 5.12942 5.20043 5.30317 5.35132 5.43227 5.54957 5.65643 5.74633 6.12446 6.40747 6.49150 6.86673 7.09680 7.15944 7.79739 8.29343 9.07544 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019943 B = 0.003979 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.690812 B = 7035.571794 C = 7728.035705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.035 3.965 3 C -0.207 4.207 4 C -0.035 4.035 5 C 0.593 3.407 6 O -0.577 6.577 7 N -0.700 5.700 8 C 0.120 3.880 9 C 0.144 3.856 10 N -0.565 5.565 11 C -0.264 4.264 12 H 0.061 0.939 13 C -0.032 4.032 14 N -0.909 5.909 15 Si 0.949 3.051 16 H -0.282 1.282 17 H -0.290 1.290 18 H -0.276 1.276 19 C 0.096 3.904 20 C -0.182 4.182 21 C -0.211 4.211 22 N -0.272 5.272 23 N -0.363 5.363 24 H 0.462 0.538 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.163 0.837 29 H 0.412 0.588 30 H 0.037 0.963 31 H 0.053 0.947 32 H 0.045 0.955 33 H 0.081 0.919 34 H 0.252 0.748 35 H 0.111 0.889 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.628 -3.406 6.279 19.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.091 4.091 3 C -0.235 4.235 4 C -0.195 4.195 5 C 0.379 3.621 6 O -0.456 6.456 7 N -0.351 5.351 8 C -0.006 4.006 9 C 0.018 3.982 10 N -0.283 5.283 11 C -0.394 4.394 12 H 0.079 0.921 13 C -0.229 4.229 14 N -0.552 5.552 15 Si 0.777 3.223 16 H -0.208 1.208 17 H -0.216 1.216 18 H -0.202 1.202 19 C -0.011 4.011 20 C -0.220 4.220 21 C -0.252 4.252 22 N -0.109 5.109 23 N -0.081 5.081 24 H 0.311 0.689 25 H 0.112 0.888 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.181 0.819 29 H 0.248 0.752 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.062 0.938 35 H 0.129 0.871 36 H 0.094 0.906 37 H 0.129 0.871 38 H 0.122 0.878 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.911 -3.614 6.147 19.278 hybrid contribution 0.052 0.072 -1.158 1.161 sum -17.859 -3.542 4.989 18.878 Atomic orbital electron populations 1.20550 0.82865 1.05724 1.04839 1.21996 0.97136 0.85761 1.04231 1.21748 0.90005 1.01046 1.10687 1.21763 0.95004 0.90476 1.12222 1.17353 0.82602 0.86316 0.75864 1.90736 1.87507 1.14598 1.52720 1.45825 1.05075 1.11256 1.72936 1.21905 0.83459 0.95244 0.99972 1.20932 0.82779 0.92480 1.02055 1.43418 1.22507 1.61724 1.00614 1.19225 1.32886 0.98435 0.88846 0.92106 1.25698 1.00789 0.94577 1.01869 1.70128 1.52245 1.02587 1.30258 0.85589 0.77619 0.78047 0.81094 1.20834 1.21568 1.20158 1.21552 0.87910 1.01889 0.89783 1.23056 1.03373 0.93468 1.02146 1.23261 1.05561 0.95843 1.00547 1.73504 1.03408 1.14292 1.19725 1.43429 1.01999 1.10763 1.51935 0.68934 0.88796 0.88502 0.88554 0.81950 0.75237 0.94429 0.92858 0.93703 0.90171 0.93819 0.87116 0.90639 0.87085 0.87834 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.44 71.23 0.74 0.24 16 2 C 0.04 0.59 7.23 41.40 0.30 0.88 16 3 C -0.21 -5.20 10.73 22.41 0.24 -4.96 16 4 C -0.04 -1.11 7.13 42.46 0.30 -0.80 16 5 C 0.59 22.98 7.83 86.74 0.68 23.66 16 6 O -0.58 -25.99 16.93 -3.95 -0.07 -26.06 16 7 N -0.70 -26.64 5.55 -466.10 -2.59 -29.23 16 8 C 0.12 5.19 6.00 86.38 0.52 5.71 16 9 C 0.14 6.69 5.45 86.38 0.47 7.16 16 10 N -0.57 -28.07 2.78 -678.02 -1.88 -29.95 16 11 C -0.26 -14.39 8.63 84.03 0.73 -13.67 16 12 H 0.06 3.34 6.55 -2.91 -0.02 3.32 16 13 C -0.03 -1.74 4.96 84.86 0.42 -1.32 16 14 N -0.91 -51.97 11.33 21.65 0.25 -51.73 16 15 Si 0.95 45.11 29.61 68.60 2.03 47.14 16 16 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 17 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 18 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 19 C 0.10 4.06 6.56 44.99 0.30 4.36 16 20 C -0.18 -7.01 9.80 30.62 0.30 -6.71 16 21 C -0.21 -8.39 10.36 30.62 0.32 -8.07 16 22 N -0.27 -7.24 11.92 -48.18 -0.57 -7.82 16 23 N -0.36 -6.23 6.83 -47.93 -0.33 -6.55 16 24 H 0.46 3.84 8.96 -219.99 -1.97 1.87 16 25 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.10 0.15 8.14 -2.38 -0.02 0.13 16 27 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 28 H 0.16 3.89 8.06 -2.91 -0.02 3.87 16 29 H 0.41 14.25 8.20 -92.71 -0.76 13.49 16 30 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.04 1.93 8.07 -2.38 -0.02 1.91 16 33 H 0.08 4.21 5.35 -2.39 -0.01 4.20 16 34 H 0.25 13.99 8.32 -92.71 -0.77 13.22 16 35 H 0.11 4.12 8.14 -2.39 -0.02 4.10 16 36 H 0.08 3.25 6.37 -2.39 -0.02 3.23 16 37 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 38 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 39 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -72.22 334.54 0.50 -71.71 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: -1.65 Total: 26.00 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: 5.31 Total: 6.49 kcal Atomic # 7 Polarization: -120.16 SS G_CDS: -5.13 Total: -125.28 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.07 Total: -26.06 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -72.22 0.50 -71.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663705708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.406 kcal (2) G-P(sol) polarization free energy of solvation -72.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds