Wall clock time and date at job start Mon Mar 30 2020 23:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38572 * 119.96603 * 2 1 4 4 C 1.38828 * 118.06625 * 179.75058 * 3 2 1 5 5 C 1.39718 * 117.89877 * 0.52524 * 4 3 2 6 6 C 1.48147 * 120.18218 * 179.73692 * 5 4 3 7 7 O 1.21514 * 120.00095 * 352.82489 * 6 5 4 8 8 N 1.34786 * 119.99963 * 172.82702 * 6 5 4 9 9 C 1.46493 * 119.99666 * 1.65507 * 8 6 5 10 10 C 1.46495 * 119.99748 * 181.66310 * 8 6 5 11 11 H 1.09000 * 109.47719 * 359.97438 * 10 8 6 12 12 C 1.53005 * 109.47112 * 119.99855 * 10 8 6 13 13 C 1.53005 * 109.46657 * 239.99484 * 10 8 6 14 14 N 1.46493 * 109.47112 * 55.00573 * 13 10 8 15 15 C 1.36940 * 120.00229 * 180.02562 * 14 13 10 16 16 H 1.07999 * 119.99770 * 359.97438 * 15 14 13 17 17 C 1.38812 * 120.00420 * 179.97438 * 15 14 13 18 18 N 1.31612 * 120.00034 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 119.99545 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46933 * 90.00282 * 19 17 15 21 21 H 1.48501 * 109.46981 * 209.99687 * 19 17 15 22 22 H 1.48497 * 109.47523 * 330.00079 * 19 17 15 23 23 N 1.32786 * 119.63304 * 359.46454 * 5 4 3 24 24 N 1.28350 * 122.02724 * 0.27904 * 23 5 4 25 25 H 1.08999 * 109.46789 * 269.98024 * 1 2 3 26 26 H 1.08998 * 109.46716 * 29.97387 * 1 2 3 27 27 H 1.08997 * 109.47094 * 149.98088 * 1 2 3 28 28 H 1.07994 * 120.96669 * 359.97438 * 3 2 1 29 29 H 1.07998 * 121.04720 * 180.28129 * 4 3 2 30 30 H 1.09004 * 109.47133 * 83.93469 * 9 8 6 31 31 H 1.09000 * 109.47740 * 323.93410 * 9 8 6 32 32 H 1.09003 * 109.47368 * 203.92653 * 9 8 6 33 33 H 1.09003 * 109.46682 * 179.97438 * 12 10 8 34 34 H 1.09001 * 109.47149 * 299.99880 * 12 10 8 35 35 H 1.08996 * 109.47246 * 59.99792 * 12 10 8 36 36 H 1.08999 * 109.47001 * 175.00263 * 13 10 8 37 37 H 1.09000 * 109.47221 * 295.00262 * 13 10 8 38 38 H 0.97003 * 120.00429 * 359.97438 * 14 13 10 39 39 H 0.97003 * 119.99697 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.2005 0.0000 4 6 3.5867 1.1545 0.0053 5 6 4.1992 -0.1013 -0.0009 6 6 5.6767 -0.2093 -0.0016 7 8 6.3588 0.7883 -0.1281 8 7 6.2644 -1.4142 0.1382 9 6 5.4422 -2.6211 0.2542 10 6 7.7253 -1.5168 0.1741 11 1 8.1620 -0.5232 0.0742 12 6 8.1606 -2.1342 1.5047 13 6 8.2029 -2.4017 -0.9791 14 7 7.6853 -1.8760 -2.2447 15 6 7.9837 -2.5084 -3.4221 16 1 8.6009 -3.3946 -3.4176 17 6 7.4928 -2.0106 -4.6213 18 7 7.7800 -2.6183 -5.7528 19 14 6.4245 -0.4782 -4.6288 20 1 7.2848 0.7242 -4.7683 21 1 5.4750 -0.5424 -5.7688 22 1 5.6646 -0.3981 -3.3555 23 7 3.4497 -1.1974 -0.0009 24 7 2.1672 -1.1450 -0.0005 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5141 28 1 1.6745 2.1444 -0.0004 29 1 4.1740 2.0607 0.0101 30 1 5.1656 -2.9694 -0.7409 31 1 4.5407 -2.3934 0.8230 32 1 6.0085 -3.3987 0.7668 33 1 9.2476 -2.2109 1.5312 34 1 7.8203 -1.5038 2.3263 35 1 7.7240 -3.1279 1.6043 36 1 9.2925 -2.4065 -1.0062 37 1 7.8386 -3.4184 -0.8319 38 1 7.1306 -1.0802 -2.2487 39 1 7.4373 -2.2701 -6.5908 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753689666.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:54 Heat of formation + Delta-G solvation = 56.145538 kcal Electronic energy + Delta-G solvation = -22155.407989 eV Core-core repulsion = 18907.091141 eV Total energy + Delta-G solvation = -3248.316848 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.41814 -39.57858 -36.63168 -34.62037 -33.87293 -33.23237 -31.84807 -30.51496 -28.59572 -26.78878 -25.92585 -25.13247 -23.73372 -22.26494 -21.44951 -19.48338 -18.16145 -17.53121 -17.14855 -16.21819 -15.89901 -15.79327 -14.85122 -14.75949 -14.40428 -13.99987 -13.76517 -13.52856 -13.25896 -12.87420 -12.79466 -12.72372 -12.57334 -12.42246 -12.35621 -11.95006 -11.78404 -11.12794 -10.91203 -10.79153 -10.54250 -10.45597 -10.09585 -9.94151 -9.86114 -9.68231 -9.55612 -8.86556 -8.39486 -7.18096 -5.73409 -3.07374 0.31184 0.56589 2.64211 2.96473 3.41561 3.46800 3.48646 3.52165 3.70405 4.13812 4.29259 4.41225 4.63975 4.69511 4.72914 5.03809 5.13287 5.17499 5.31103 5.41954 5.45915 5.53911 5.54304 5.58273 5.73722 5.84426 5.86942 5.92661 6.00741 6.08077 6.25437 6.35969 6.42600 6.65145 6.84720 7.47946 8.02981 8.13556 8.42379 8.46164 9.25801 9.98982 10.19140 11.45133 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.014885 B = 0.006663 C = 0.005336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.619759 B = 4201.317998 C = 5246.389566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.080 3.920 3 C -0.125 4.125 4 C -0.063 4.063 5 C 0.025 3.975 6 C 0.570 3.430 7 O -0.535 6.535 8 N -0.574 5.574 9 C 0.074 3.926 10 C 0.118 3.882 11 H 0.102 0.898 12 C -0.155 4.155 13 C 0.149 3.851 14 N -0.752 5.752 15 C -0.240 4.240 16 H 0.091 0.909 17 C 0.007 3.993 18 N -0.934 5.934 19 Si 0.881 3.119 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.282 1.282 23 N -0.194 5.194 24 N -0.248 5.248 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.156 0.844 29 H 0.162 0.838 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.039 0.961 37 H 0.031 0.969 38 H 0.362 0.638 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.727 6.181 17.664 22.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.064 4.064 3 C -0.154 4.154 4 C -0.092 4.092 5 C -0.121 4.121 6 C 0.355 3.645 7 O -0.412 6.412 8 N -0.304 5.304 9 C -0.069 4.069 10 C 0.016 3.984 11 H 0.120 0.880 12 C -0.213 4.213 13 C 0.021 3.979 14 N -0.398 5.398 15 C -0.370 4.370 16 H 0.109 0.891 17 C -0.188 4.188 18 N -0.582 5.582 19 Si 0.711 3.289 20 H -0.210 1.210 21 H -0.218 1.218 22 H -0.208 1.208 23 N -0.040 5.040 24 N -0.092 5.092 25 H 0.104 0.896 26 H 0.099 0.901 27 H 0.104 0.896 28 H 0.174 0.826 29 H 0.180 0.820 30 H 0.087 0.913 31 H 0.114 0.886 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.049 0.951 38 H 0.195 0.805 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.281 4.869 17.430 21.871 hybrid contribution -0.736 2.585 -0.331 2.708 sum -13.017 7.454 17.099 22.746 Atomic orbital electron populations 1.20730 0.87169 1.04402 1.03729 1.23077 0.99302 0.90585 0.93386 1.22297 0.94176 1.00148 0.98733 1.22440 0.95101 0.99185 0.92492 1.22901 0.96690 0.92080 1.00450 1.17581 0.85205 0.83979 0.77784 1.90778 1.63393 1.36183 1.50848 1.47680 1.07262 1.06639 1.68812 1.22339 0.95112 0.85956 1.03479 1.21603 0.78605 1.02390 0.95838 0.87981 1.22057 1.01999 1.01169 0.96092 1.20992 0.96988 0.95199 0.84701 1.42651 1.61942 1.32781 1.02438 1.19053 1.26396 1.08500 0.83035 0.89092 1.24600 1.00426 0.98519 0.95289 1.69693 1.49854 1.41500 0.97173 0.86595 0.81005 0.84695 0.76557 1.20958 1.21784 1.20848 1.73708 0.99176 1.24981 1.06164 1.73140 1.01564 1.24673 1.09800 0.89591 0.90078 0.89598 0.82608 0.82019 0.91331 0.88559 0.91524 0.90948 0.92536 0.91928 0.94282 0.95080 0.80482 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.68 10.19 36.01 0.37 -0.31 16 2 C 0.08 0.86 6.87 -82.32 -0.57 0.30 16 3 C -0.12 -1.22 9.86 -39.24 -0.39 -1.61 16 4 C -0.06 -0.81 9.73 -38.81 -0.38 -1.19 16 5 C 0.02 0.40 6.70 -82.83 -0.55 -0.16 16 6 C 0.57 10.47 7.37 -12.19 -0.09 10.38 16 7 O -0.54 -10.91 15.75 5.35 0.08 -10.83 16 8 N -0.57 -9.89 2.24 -174.93 -0.39 -10.29 16 9 C 0.07 1.14 8.44 59.84 0.50 1.64 16 10 C 0.12 1.98 2.79 -67.93 -0.19 1.80 16 11 H 0.10 1.86 6.90 -51.93 -0.36 1.51 16 12 C -0.15 -1.91 9.18 37.16 0.34 -1.57 16 13 C 0.15 2.98 5.56 -4.04 -0.02 2.96 16 14 N -0.75 -19.13 5.24 -59.91 -0.31 -19.44 16 15 C -0.24 -7.10 10.47 -15.06 -0.16 -7.26 16 16 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 17 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 18 N -0.93 -30.35 13.97 55.49 0.78 -29.58 16 19 Si 0.88 24.09 27.73 -169.99 -4.71 19.37 16 20 H -0.28 -7.72 7.11 56.52 0.40 -7.32 16 21 H -0.29 -7.92 7.11 56.52 0.40 -7.52 16 22 H -0.28 -7.61 6.52 56.52 0.37 -7.24 16 23 N -0.19 -3.11 7.27 33.32 0.24 -2.87 16 24 N -0.25 -3.55 11.43 33.63 0.38 -3.17 16 25 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.37 8.09 -51.93 -0.42 -0.05 16 27 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 29 H 0.16 1.85 7.74 -52.49 -0.41 1.44 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.10 1.40 5.28 -51.97 -0.27 1.12 16 32 H 0.07 0.86 6.44 -51.93 -0.33 0.53 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.71 6.67 -51.93 -0.35 0.36 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.03 0.61 7.84 -51.93 -0.41 0.20 16 38 H 0.36 9.49 4.93 -40.82 -0.20 9.29 16 39 H 0.26 8.02 8.31 -40.82 -0.34 7.68 16 LS Contribution 324.18 15.07 4.89 4.89 Total: -1.00 -36.43 324.18 -5.57 -42.00 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -5.30 Total: 4.81 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -1.23 Total: 5.11 kcal Atomic # 7 Polarization: -66.04 SS G_CDS: 0.70 Total: -65.34 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.08 Total: -10.83 kcal Atomic # 14 Polarization: 24.09 SS G_CDS: -4.71 Total: 19.37 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -36.43 -5.57 -42.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753689666.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.147 kcal (2) G-P(sol) polarization free energy of solvation -36.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds