Wall clock time and date at job start Tue Mar 31 2020 00:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46903 * 2 1 4 4 C 1.52999 * 109.46901 * 240.00006 * 2 1 3 5 5 C 1.50703 * 109.46771 * 120.00292 * 2 1 3 6 6 C 1.38234 * 120.00257 * 60.00257 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.27927 * 6 5 2 8 8 C 1.38229 * 120.00124 * 359.45911 * 7 6 5 9 9 C 1.50699 * 120.00230 * 180.28369 * 8 7 6 10 10 S 1.81392 * 109.47251 * 270.27686 * 9 8 7 11 11 C 1.81401 * 103.00094 * 179.97438 * 10 9 8 12 12 C 1.53005 * 109.47257 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47402 * 180.02562 * 12 11 10 14 14 H 1.07997 * 119.99492 * 0.02562 * 13 12 11 15 15 C 1.37869 * 120.00023 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00137 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99826 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46665 * 90.00266 * 17 15 13 19 19 H 1.48500 * 109.46856 * 209.99912 * 17 15 13 20 20 H 1.48494 * 109.46917 * 330.00183 * 17 15 13 21 21 C 1.38234 * 119.99957 * 0.56005 * 8 7 6 22 22 C 1.38234 * 119.99503 * 240.01857 * 5 2 1 23 23 H 1.09007 * 109.47341 * 299.99607 * 1 2 3 24 24 H 1.08998 * 109.47273 * 59.99893 * 1 2 3 25 25 H 1.09001 * 109.47339 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46371 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47244 * 300.00125 * 3 2 1 28 28 H 1.08999 * 109.46950 * 60.00346 * 3 2 1 29 29 H 1.09001 * 109.46958 * 300.00030 * 4 2 1 30 30 H 1.08998 * 109.47075 * 59.99980 * 4 2 1 31 31 H 1.08997 * 109.46840 * 179.97438 * 4 2 1 32 32 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 33 33 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 34 34 H 1.09007 * 109.47085 * 30.27493 * 9 8 7 35 35 H 1.08998 * 109.47270 * 150.26989 * 9 8 7 36 36 H 1.09002 * 109.47133 * 300.00020 * 11 10 9 37 37 H 1.09000 * 109.47284 * 60.00237 * 11 10 9 38 38 H 1.08996 * 109.47121 * 300.00557 * 12 11 10 39 39 H 1.09000 * 109.46711 * 59.99971 * 12 11 10 40 40 H 0.97004 * 120.00386 * 179.97438 * 16 15 13 41 41 H 1.08001 * 120.00274 * 179.72697 * 21 8 7 42 42 H 1.07997 * 120.00460 * 0.02562 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2305 6 6 1.6983 -2.0340 1.4492 7 6 2.1544 -2.6839 2.5808 8 6 2.9534 -2.0137 3.4880 9 6 3.4558 -2.7241 4.7185 10 16 2.2608 -2.5160 6.0671 11 6 3.0283 -3.4253 7.4364 12 6 2.1281 -3.3436 8.6709 13 6 2.7660 -4.0985 9.8086 14 1 3.7183 -4.5872 9.6655 15 6 2.1337 -4.1652 11.0319 16 7 0.9742 -3.5696 11.2062 17 14 2.9241 -5.1015 12.4420 18 1 3.7935 -4.1830 13.2203 19 1 1.8653 -5.6497 13.3272 20 1 3.7418 -6.2160 11.8993 21 6 3.2870 -0.6901 3.2695 22 6 2.8267 -0.0386 2.1406 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 3.1300 1.4424 0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6766 -1.7489 -1.2492 30 1 1.6766 -0.2074 -2.1392 31 1 3.1299 -0.7208 -1.2495 32 1 1.0771 -2.5587 0.7384 33 1 1.8898 -3.7166 2.7539 34 1 3.5773 -3.7854 4.5012 35 1 4.4159 -2.3019 5.0152 36 1 3.1601 -4.4689 7.1508 37 1 3.9991 -2.9858 7.6654 38 1 1.9966 -2.3000 8.9563 39 1 1.1571 -3.7828 8.4421 40 1 0.5291 -3.6168 12.0669 41 1 3.9077 -0.1652 3.9806 42 1 3.0870 0.9956 1.9701 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058263072.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:32 Heat of formation + Delta-G solvation = -13.500996 kcal Electronic energy + Delta-G solvation = -18282.156572 eV Core-core repulsion = 15544.820086 eV Total energy + Delta-G solvation = -2737.336485 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.140 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.99156 -36.80020 -33.67009 -31.89214 -31.14657 -30.84499 -27.61275 -27.49189 -26.82845 -25.18213 -22.38644 -22.17962 -20.95037 -19.31023 -16.72061 -16.49025 -15.54024 -15.49731 -15.01879 -14.52091 -14.49131 -14.19223 -13.99605 -13.73651 -13.50572 -13.47550 -12.80561 -12.63372 -12.39319 -12.21217 -12.02441 -11.92914 -11.68620 -11.47907 -11.46828 -11.15112 -11.02166 -10.78383 -10.62824 -10.57474 -10.18041 -9.63784 -9.61716 -9.04032 -8.89982 -8.41560 -8.40682 -7.11039 -6.05240 -4.09925 1.14465 1.42863 2.39239 3.26238 3.29380 3.35874 3.39053 3.83755 4.37168 4.42234 4.51477 4.75366 4.80838 4.87201 5.00595 5.06347 5.24291 5.30139 5.34052 5.36377 5.43467 5.50210 5.59322 5.61646 5.64450 5.65867 5.75645 5.81593 6.00008 6.01149 6.03122 6.05753 6.07212 6.20041 6.44193 6.58904 6.63192 6.74672 6.99348 7.57793 7.66733 7.91205 8.28426 8.95158 9.53890 11.05548 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.048016 B = 0.002575 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.994600 B =10869.648816 C =10956.341932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.029 4.029 3 C -0.144 4.144 4 C -0.137 4.137 5 C -0.073 4.073 6 C -0.116 4.116 7 C -0.101 4.101 8 C -0.065 4.065 9 C -0.053 4.053 10 S -0.276 6.276 11 C -0.062 4.062 12 C 0.038 3.962 13 C -0.521 4.521 14 H 0.057 0.943 15 C 0.059 3.941 16 N -0.891 5.891 17 Si 0.897 3.103 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 C -0.101 4.101 22 C -0.122 4.122 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.263 0.737 41 H 0.123 0.877 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.925 6.914 -24.665 25.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.029 4.029 3 C -0.201 4.201 4 C -0.195 4.195 5 C -0.074 4.074 6 C -0.134 4.134 7 C -0.120 4.120 8 C -0.066 4.066 9 C -0.201 4.201 10 S -0.046 6.046 11 C -0.210 4.210 12 C -0.001 4.001 13 C -0.561 4.561 14 H 0.075 0.925 15 C -0.143 4.143 16 N -0.529 5.529 17 Si 0.724 3.276 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.121 4.121 22 C -0.140 4.140 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.137 0.863 33 H 0.141 0.859 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.072 0.928 41 H 0.141 0.859 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.832 7.475 -24.516 25.696 hybrid contribution 1.514 -1.202 0.984 2.169 sum 3.346 6.273 -23.532 24.583 Atomic orbital electron populations 1.21895 0.93683 1.02155 1.01875 1.19491 0.95729 0.94990 0.92737 1.21963 1.01152 0.95054 1.01945 1.21883 1.01186 1.00232 0.96170 1.19771 0.97767 0.94047 0.95850 1.20888 1.00554 0.94355 0.97611 1.21014 0.96957 1.00182 0.93882 1.19302 0.98431 0.94391 0.94479 1.22240 1.00461 1.02677 0.94683 1.87184 1.34579 1.73811 1.09051 1.23708 1.02097 0.99524 0.95650 1.18896 0.94323 0.98290 0.88559 1.21100 1.06022 1.33449 0.95522 0.92473 1.25018 0.94910 0.95640 0.98737 1.69974 1.15246 1.43355 1.24360 0.86519 0.78970 0.80058 0.82021 1.20547 1.21091 1.19828 1.21043 0.99967 0.93815 0.97234 1.21109 0.98537 1.00006 0.94316 0.92336 0.92478 0.92386 0.92291 0.92490 0.92147 0.92424 0.92480 0.92544 0.86274 0.85927 0.89790 0.89786 0.91439 0.91444 0.95565 0.95554 0.92776 0.85932 0.85712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.29 37.16 0.31 -0.79 16 2 C -0.03 -0.24 0.85 -155.66 -0.13 -0.38 16 3 C -0.14 -1.05 7.13 37.16 0.27 -0.78 16 4 C -0.14 -0.99 8.29 37.16 0.31 -0.68 16 5 C -0.07 -0.77 4.76 -104.62 -0.50 -1.27 16 6 C -0.12 -1.28 8.71 -39.58 -0.34 -1.63 16 7 C -0.10 -1.26 9.70 -39.58 -0.38 -1.65 16 8 C -0.06 -0.88 5.14 -104.63 -0.54 -1.41 16 9 C -0.05 -0.77 6.07 36.01 0.22 -0.55 16 10 S -0.28 -5.28 21.72 -107.50 -2.33 -7.61 16 11 C -0.06 -1.32 5.88 37.16 0.22 -1.10 16 12 C 0.04 1.00 4.98 -27.88 -0.14 0.87 16 13 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 14 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 17 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 C -0.10 -1.26 9.70 -39.58 -0.38 -1.65 16 22 C -0.12 -1.35 8.98 -39.58 -0.36 -1.70 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.46 7.39 -51.93 -0.38 0.07 16 26 H 0.06 0.41 7.51 -51.93 -0.39 0.02 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.46 7.51 -51.93 -0.39 0.07 16 29 H 0.06 0.41 7.39 -51.93 -0.38 0.03 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.12 1.10 7.10 -52.49 -0.37 0.73 16 33 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 34 H 0.08 1.13 8.09 -51.92 -0.42 0.71 16 35 H 0.08 1.13 8.09 -51.93 -0.42 0.72 16 36 H 0.07 1.38 8.14 -51.92 -0.42 0.96 16 37 H 0.07 1.38 8.14 -51.92 -0.42 0.95 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 42 H 0.13 1.15 5.89 -52.49 -0.31 0.84 16 LS Contribution 353.33 15.07 5.32 5.32 Total: -1.00 -30.42 353.33 -10.43 -40.84 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -7.26 Total: -2.70 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: -1.87 Total: -26.20 kcal Atomic # 7 Polarization: -26.93 SS G_CDS: 0.74 Total: -26.19 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -5.28 SS G_CDS: -2.33 Total: -7.61 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.42 -10.43 -40.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058263072.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.344 kcal (2) G-P(sol) polarization free energy of solvation -30.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds