Wall clock time and date at job start Tue Mar 31 2020 00:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46903 * 2 1 4 4 C 1.52999 * 109.46901 * 240.00006 * 2 1 3 5 5 C 1.50703 * 109.46771 * 120.00292 * 2 1 3 6 6 C 1.38234 * 120.00257 * 60.00257 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.27927 * 6 5 2 8 8 C 1.38229 * 120.00124 * 359.45911 * 7 6 5 9 9 C 1.50699 * 120.00230 * 180.28369 * 8 7 6 10 10 S 1.81392 * 109.47251 * 270.27686 * 9 8 7 11 11 C 1.81401 * 103.00094 * 179.97438 * 10 9 8 12 12 C 1.53005 * 109.47257 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47402 * 180.02562 * 12 11 10 14 14 H 1.07997 * 119.99492 * 0.02562 * 13 12 11 15 15 C 1.37869 * 120.00023 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00137 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99826 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46665 * 90.00266 * 17 15 13 19 19 H 1.48500 * 109.46856 * 209.99912 * 17 15 13 20 20 H 1.48494 * 109.46917 * 330.00183 * 17 15 13 21 21 C 1.38234 * 119.99957 * 0.56005 * 8 7 6 22 22 C 1.38234 * 119.99503 * 240.01857 * 5 2 1 23 23 H 1.09007 * 109.47341 * 299.99607 * 1 2 3 24 24 H 1.08998 * 109.47273 * 59.99893 * 1 2 3 25 25 H 1.09001 * 109.47339 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46371 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47244 * 300.00125 * 3 2 1 28 28 H 1.08999 * 109.46950 * 60.00346 * 3 2 1 29 29 H 1.09001 * 109.46958 * 300.00030 * 4 2 1 30 30 H 1.08998 * 109.47075 * 59.99980 * 4 2 1 31 31 H 1.08997 * 109.46840 * 179.97438 * 4 2 1 32 32 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 33 33 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 34 34 H 1.09007 * 109.47085 * 30.27493 * 9 8 7 35 35 H 1.08998 * 109.47270 * 150.26989 * 9 8 7 36 36 H 1.09002 * 109.47133 * 300.00020 * 11 10 9 37 37 H 1.09000 * 109.47284 * 60.00237 * 11 10 9 38 38 H 1.08996 * 109.47121 * 300.00557 * 12 11 10 39 39 H 1.09000 * 109.46711 * 59.99971 * 12 11 10 40 40 H 0.97004 * 120.00386 * 179.97438 * 16 15 13 41 41 H 1.08001 * 120.00274 * 179.72697 * 21 8 7 42 42 H 1.07997 * 120.00460 * 0.02562 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2305 6 6 1.6983 -2.0340 1.4492 7 6 2.1544 -2.6839 2.5808 8 6 2.9534 -2.0137 3.4880 9 6 3.4558 -2.7241 4.7185 10 16 2.2608 -2.5160 6.0671 11 6 3.0283 -3.4253 7.4364 12 6 2.1281 -3.3436 8.6709 13 6 2.7660 -4.0985 9.8086 14 1 3.7183 -4.5872 9.6655 15 6 2.1337 -4.1652 11.0319 16 7 0.9742 -3.5696 11.2062 17 14 2.9241 -5.1015 12.4420 18 1 3.7935 -4.1830 13.2203 19 1 1.8653 -5.6497 13.3272 20 1 3.7418 -6.2160 11.8993 21 6 3.2870 -0.6901 3.2695 22 6 2.8267 -0.0386 2.1406 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 3.1300 1.4424 0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6766 -1.7489 -1.2492 30 1 1.6766 -0.2074 -2.1392 31 1 3.1299 -0.7208 -1.2495 32 1 1.0771 -2.5587 0.7384 33 1 1.8898 -3.7166 2.7539 34 1 3.5773 -3.7854 4.5012 35 1 4.4159 -2.3019 5.0152 36 1 3.1601 -4.4689 7.1508 37 1 3.9991 -2.9858 7.6654 38 1 1.9966 -2.3000 8.9563 39 1 1.1571 -3.7828 8.4421 40 1 0.5291 -3.6168 12.0669 41 1 3.9077 -0.1652 3.9806 42 1 3.0870 0.9956 1.9701 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058263072.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:31 Heat of formation + Delta-G solvation = -26.679105 kcal Electronic energy + Delta-G solvation = -18282.728017 eV Core-core repulsion = 15544.820086 eV Total energy + Delta-G solvation = -2737.907931 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.140 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.82704 -37.56668 -35.78901 -32.92472 -32.83160 -32.02622 -28.22467 -28.07127 -27.93307 -27.16517 -23.47149 -23.26998 -22.57225 -20.06143 -18.68752 -17.63291 -16.86264 -16.52326 -16.47352 -15.90634 -15.58742 -15.29946 -15.05800 -14.92267 -14.57836 -14.37977 -14.14342 -13.71504 -13.65155 -13.39102 -13.01059 -12.91789 -12.84080 -12.66521 -12.51921 -12.37746 -12.26966 -12.14677 -11.81648 -11.72042 -11.50686 -11.34725 -11.32286 -10.83866 -10.62183 -9.81235 -9.38944 -8.64948 -8.24222 -6.38323 0.08639 0.51775 1.08061 1.40348 1.42080 1.53401 1.78052 2.39564 2.91066 3.08748 3.61583 3.77592 3.82198 3.97966 4.13827 4.15077 4.24943 4.34024 4.37171 4.40805 4.49799 4.60025 4.67679 4.81341 4.84572 4.85916 4.92819 5.01853 5.04383 5.06264 5.16496 5.18130 5.26482 5.36386 5.39103 5.46689 5.47798 5.58017 5.67111 5.72317 5.75185 6.09424 6.10081 6.76100 7.31310 8.87616 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.048016 B = 0.002575 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.994600 B =10869.648816 C =10956.341932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.030 4.030 3 C -0.144 4.144 4 C -0.136 4.136 5 C -0.070 4.070 6 C -0.121 4.121 7 C -0.110 4.110 8 C -0.087 4.087 9 C -0.033 4.033 10 S -0.313 6.313 11 C -0.050 4.050 12 C 0.045 3.955 13 C -0.542 4.542 14 H 0.068 0.932 15 C 0.000 4.000 16 N -0.933 5.933 17 Si 0.974 3.026 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.260 1.260 21 C -0.110 4.110 22 C -0.128 4.128 23 H 0.046 0.954 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.137 0.863 33 H 0.127 0.873 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.076 0.924 38 H -0.005 1.005 39 H -0.005 1.005 40 H 0.266 0.734 41 H 0.127 0.873 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.042 6.794 -26.241 27.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.030 4.030 3 C -0.201 4.201 4 C -0.193 4.193 5 C -0.071 4.071 6 C -0.138 4.138 7 C -0.130 4.130 8 C -0.089 4.089 9 C -0.180 4.180 10 S -0.083 6.083 11 C -0.198 4.198 12 C 0.007 3.993 13 C -0.582 4.582 14 H 0.086 0.914 15 C -0.199 4.199 16 N -0.572 5.572 17 Si 0.797 3.203 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.184 1.184 21 C -0.130 4.130 22 C -0.145 4.145 23 H 0.065 0.935 24 H 0.091 0.909 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.155 0.845 33 H 0.145 0.855 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.013 0.987 39 H 0.013 0.987 40 H 0.075 0.925 41 H 0.145 0.855 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.959 7.350 -26.093 27.270 hybrid contribution 1.123 -1.082 1.303 2.032 sum 4.082 6.269 -24.791 25.895 Atomic orbital electron populations 1.21898 0.93386 1.02206 1.02101 1.19566 0.95905 0.95467 0.92069 1.21967 1.01339 0.94394 1.02418 1.21870 1.01001 1.00319 0.96080 1.20130 0.96624 0.93951 0.96378 1.21132 1.00491 0.94754 0.97460 1.21189 0.96876 1.00605 0.94338 1.19301 1.00068 0.95044 0.94464 1.22253 0.99121 1.03825 0.92771 1.87255 1.37052 1.73497 1.10479 1.23338 1.01151 1.00602 0.94729 1.18668 0.93943 0.95774 0.90938 1.21551 1.06546 1.33660 0.96428 0.91408 1.26057 0.95360 0.96515 1.01925 1.70121 1.16939 1.44845 1.25315 0.85322 0.78080 0.78831 0.78054 1.19580 1.20690 1.18406 1.21219 1.00219 0.93635 0.97953 1.21371 0.98366 1.00894 0.93896 0.93503 0.90888 0.92456 0.92031 0.91129 0.92634 0.92379 0.91034 0.92826 0.84501 0.85540 0.88606 0.88602 0.90551 0.90540 0.98691 0.98677 0.92539 0.85541 0.83960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.29 71.98 0.60 -1.32 16 2 C -0.03 -0.43 0.85 -52.93 -0.05 -0.47 16 3 C -0.14 -1.76 7.13 71.98 0.51 -1.25 16 4 C -0.14 -1.61 8.29 71.98 0.60 -1.01 16 5 C -0.07 -1.35 4.76 -19.87 -0.09 -1.45 16 6 C -0.12 -2.48 8.71 22.27 0.19 -2.29 16 7 C -0.11 -2.66 9.70 22.27 0.22 -2.44 16 8 C -0.09 -2.29 5.14 -19.87 -0.10 -2.39 16 9 C -0.03 -0.92 6.07 71.24 0.43 -0.49 16 10 S -0.31 -12.10 21.72 -56.49 -1.23 -13.33 16 11 C -0.05 -2.17 5.88 71.98 0.42 -1.75 16 12 C 0.05 2.48 4.98 29.85 0.15 2.63 16 13 C -0.54 -31.13 9.11 25.60 0.23 -30.90 16 14 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 15 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 16 N -0.93 -57.76 13.29 21.44 0.28 -57.48 16 17 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 21 C -0.11 -2.67 9.70 22.27 0.22 -2.45 16 22 C -0.13 -2.64 8.98 22.27 0.20 -2.44 16 23 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 24 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 0.79 7.39 -2.39 -0.02 0.77 16 26 H 0.06 0.72 7.51 -2.38 -0.02 0.70 16 27 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.05 0.73 7.51 -2.39 -0.02 0.72 16 29 H 0.06 0.69 7.39 -2.39 -0.02 0.67 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.14 2.26 7.10 -2.91 -0.02 2.24 16 33 H 0.13 2.85 8.06 -2.91 -0.02 2.83 16 34 H 0.10 2.46 8.09 -2.39 -0.02 2.45 16 35 H 0.10 2.47 8.09 -2.39 -0.02 2.45 16 36 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 37 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 38 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 39 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 40 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 41 H 0.13 2.86 8.06 -2.91 -0.02 2.83 16 42 H 0.14 2.37 5.89 -2.91 -0.02 2.35 16 Total: -1.00 -66.36 353.33 6.03 -60.33 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 0.96 Total: 11.82 kcal Atomic # 6 Polarization: -51.57 SS G_CDS: 3.99 Total: -47.58 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: 0.28 Total: -57.48 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: -12.10 SS G_CDS: -1.23 Total: -13.33 kcal Total: -66.36 6.03 -60.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058263072.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.652 kcal (2) G-P(sol) polarization free energy of solvation -66.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds