Wall clock time and date at job start Tue Mar 31 2020 00:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47009 * 2 1 4 4 C 1.50695 * 109.47080 * 119.99954 * 2 1 3 5 5 N 1.30270 * 126.28526 * 299.97902 * 4 2 1 6 6 N 1.28669 * 109.38554 * 180.02562 * 5 4 2 7 7 C 1.30272 * 109.37870 * 359.97438 * 6 5 4 8 8 C 1.50703 * 126.28276 * 179.97438 * 7 6 5 9 9 N 1.46900 * 109.46887 * 90.03072 * 8 7 6 10 10 C 1.46895 * 110.99920 * 190.00148 * 9 8 7 11 11 C 1.50702 * 109.47314 * 168.98741 * 10 9 8 12 12 H 1.08006 * 119.99796 * 354.95784 * 11 10 9 13 13 C 1.37876 * 120.00432 * 174.95546 * 11 10 9 14 14 N 1.31513 * 119.99556 * 0.02562 * 13 11 10 15 15 Si 1.86791 * 120.00328 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47069 * 90.00311 * 15 13 11 17 17 H 1.48501 * 109.47477 * 210.00330 * 15 13 11 18 18 H 1.48500 * 109.47564 * 330.00457 * 15 13 11 19 19 C 1.46896 * 111.00483 * 66.04373 * 9 8 7 20 20 C 1.53002 * 109.47087 * 62.04889 * 19 9 8 21 21 C 1.47199 * 109.47448 * 179.59916 * 20 19 9 22 22 N 6.48314 * 101.24808 * 190.70222 * 2 1 3 23 23 O 1.34365 * 107.43668 * 0.24555 * 7 6 5 24 24 H 1.08994 * 109.47546 * 300.00062 * 1 2 3 25 25 H 1.09008 * 109.46810 * 60.00125 * 1 2 3 26 26 H 1.08994 * 109.47192 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47061 * 240.00438 * 2 1 3 28 28 H 1.09000 * 109.46851 * 60.00310 * 3 2 1 29 29 H 1.09003 * 109.47037 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47123 * 300.00242 * 3 2 1 31 31 H 1.08994 * 109.47041 * 330.02595 * 8 7 6 32 32 H 1.09002 * 109.47180 * 210.02737 * 8 7 6 33 33 H 1.08996 * 109.47314 * 288.98743 * 10 9 8 34 34 H 1.09000 * 109.47407 * 48.98906 * 10 9 8 35 35 H 0.97000 * 120.00022 * 179.97438 * 14 13 11 36 36 H 1.09000 * 109.47345 * 182.04948 * 19 9 8 37 37 H 1.09004 * 109.47056 * 302.05219 * 19 9 8 38 38 H 1.09003 * 109.46940 * 299.59990 * 20 19 9 39 39 H 1.08996 * 109.46965 * 59.59584 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7946 -0.3735 2.4662 6 7 2.3816 -1.2030 3.2554 7 6 3.0134 -2.0976 2.5500 8 6 3.8266 -3.2465 3.0884 9 7 2.9602 -4.4197 3.2642 10 6 3.6553 -5.4813 4.0042 11 6 2.6667 -6.5477 4.4001 12 1 1.6143 -6.4090 4.2011 13 6 3.1058 -7.7003 5.0163 14 7 4.3873 -7.8689 5.2590 15 14 1.8805 -9.0217 5.5076 16 1 1.7114 -9.9814 4.3869 17 1 2.3830 -9.7424 6.7048 18 1 0.5727 -8.3922 5.8216 19 6 2.4729 -4.9131 1.9692 20 6 3.6606 -5.3570 1.1129 21 6 3.1717 -5.8604 -0.1811 22 7 2.7946 -6.2480 -1.1808 23 8 2.8118 -1.8046 1.2543 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 4.2589 -2.9668 4.0491 32 1 4.6254 -3.4866 2.3867 33 1 4.4280 -5.9188 3.3722 34 1 4.1133 -5.0602 4.8993 35 1 4.6963 -8.6796 5.6928 36 1 1.8050 -5.7592 2.1307 37 1 1.9331 -4.1167 1.4568 38 1 4.3248 -4.5091 0.9454 39 1 4.2046 -6.1483 1.6285 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132814271.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:29 Heat of formation + Delta-G solvation = 60.423356 kcal Electronic energy + Delta-G solvation = -21524.986895 eV Core-core repulsion = 18276.855547 eV Total energy + Delta-G solvation = -3248.131348 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.06201 -38.13739 -36.22582 -35.98786 -35.89412 -32.85663 -31.51658 -30.12371 -27.77290 -27.52329 -25.80187 -24.27076 -23.96207 -22.20470 -20.94183 -20.12421 -17.70587 -17.24915 -17.07631 -16.43587 -15.49786 -15.35386 -15.11624 -14.67011 -14.44608 -14.14691 -13.80093 -13.52048 -13.41988 -12.53759 -12.47112 -12.42967 -12.22138 -12.15257 -12.11642 -11.75907 -11.68162 -11.61533 -11.53348 -11.45743 -11.25996 -10.86580 -10.77186 -10.65215 -10.41263 -10.09728 -9.49765 -9.31476 -8.57918 -7.69215 -6.17473 -4.19459 1.29211 2.32789 2.57144 2.98488 3.02254 3.26018 3.33589 3.37738 3.83492 4.17412 4.32266 4.38704 4.64199 4.67420 4.73606 4.84089 5.14393 5.19472 5.26437 5.30541 5.33683 5.44194 5.44389 5.49226 5.59517 5.64578 5.71092 5.73152 5.86139 5.89097 6.00207 6.05652 6.41086 6.89627 7.00401 7.54205 7.67206 7.81570 7.89721 8.23944 8.51093 8.87591 9.46248 10.92771 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.020162 B = 0.004425 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.416649 B = 6326.372766 C = 6935.779342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.005 3.995 3 C -0.144 4.144 4 C 0.152 3.848 5 N -0.284 5.284 6 N -0.276 5.276 7 C 0.186 3.814 8 C 0.138 3.862 9 N -0.520 5.520 10 C 0.188 3.812 11 C -0.513 4.513 12 H 0.066 0.934 13 C 0.061 3.939 14 N -0.895 5.895 15 Si 0.896 3.104 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.272 1.272 19 C 0.069 3.931 20 C -0.073 4.073 21 C 0.224 3.776 22 N -0.457 5.457 23 O -0.228 6.228 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.098 0.902 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.122 0.878 32 H 0.066 0.934 33 H 0.011 0.989 34 H 0.038 0.962 35 H 0.263 0.737 36 H 0.100 0.900 37 H 0.058 0.942 38 H 0.098 0.902 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.958 14.219 -9.782 17.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.015 4.015 3 C -0.202 4.202 4 C -0.059 4.059 5 N -0.131 5.131 6 N -0.123 5.123 7 C -0.026 4.026 8 C 0.008 3.992 9 N -0.244 5.244 10 C 0.064 3.936 11 C -0.551 4.551 12 H 0.084 0.916 13 C -0.141 4.141 14 N -0.534 5.534 15 Si 0.724 3.276 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.062 4.062 20 C -0.115 4.115 21 C -0.093 4.093 22 N -0.134 5.134 23 O -0.107 6.107 24 H 0.090 0.910 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.116 0.884 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.140 0.860 32 H 0.084 0.916 33 H 0.029 0.971 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.119 0.881 37 H 0.076 0.924 38 H 0.116 0.884 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.241 14.298 -9.843 17.502 hybrid contribution 0.764 -1.617 -0.697 1.919 sum -1.477 12.681 -10.540 16.556 Atomic orbital electron populations 1.21865 0.91894 1.03115 1.03449 1.19674 0.96955 0.95224 0.89612 1.21861 1.01513 0.93324 1.03491 1.27900 0.93389 0.86329 0.98292 1.74319 1.18981 1.21443 0.98365 1.74426 1.09143 1.02271 1.26439 1.28208 0.98896 0.99162 0.76309 1.20707 0.91268 0.85792 1.01388 1.62442 1.38635 1.06956 1.16338 1.19951 0.93671 0.87167 0.92794 1.21061 0.94128 1.00880 1.39057 0.91614 1.24927 0.95276 0.98264 0.95684 1.69923 1.13453 1.27504 1.42545 0.86512 0.81444 0.81526 0.78108 1.20700 1.21172 1.19661 1.22117 0.95305 1.00797 0.87948 1.20202 1.01698 1.03054 0.86557 1.29168 0.93058 0.92762 0.94343 1.81172 1.09645 1.10059 1.12566 1.84802 1.54544 1.39685 1.31662 0.90994 0.90796 0.92017 0.88381 0.91023 0.92200 0.90791 0.86024 0.91649 0.97087 0.94415 0.92691 0.88148 0.92362 0.88363 0.85517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.18 37.16 0.34 -0.86 16 2 C 0.01 0.05 3.39 -91.77 -0.31 -0.26 16 3 C -0.14 -1.07 9.18 37.16 0.34 -0.73 16 4 C 0.15 2.06 6.99 -12.94 -0.09 1.97 16 5 N -0.28 -4.59 12.22 32.55 0.40 -4.19 16 6 N -0.28 -4.87 12.22 32.55 0.40 -4.47 16 7 C 0.19 2.92 7.03 -12.94 -0.09 2.83 16 8 C 0.14 2.04 5.38 -4.97 -0.03 2.02 16 9 N -0.52 -9.35 4.68 -237.52 -1.11 -10.46 16 10 C 0.19 4.04 4.53 -4.98 -0.02 4.02 16 11 C -0.51 -12.78 8.40 -34.44 -0.29 -13.07 16 12 H 0.07 1.66 7.38 -52.48 -0.39 1.28 16 13 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -24.15 13.29 55.43 0.74 -23.41 16 15 Si 0.90 20.45 29.54 -169.99 -5.02 15.42 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 C 0.07 1.12 4.94 -3.83 -0.02 1.10 16 20 C -0.07 -1.04 5.05 -29.52 -0.15 -1.19 16 21 C 0.22 3.52 15.44 -20.74 -0.32 3.20 16 22 N -0.46 -8.09 18.54 42.18 0.78 -7.31 16 23 O -0.23 -3.30 10.24 5.36 0.05 -3.24 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.12 1.74 7.92 -51.93 -0.41 1.33 16 32 H 0.07 0.80 6.07 -51.93 -0.32 0.49 16 33 H 0.01 0.25 6.01 -51.93 -0.31 -0.07 16 34 H 0.04 0.87 7.91 -51.93 -0.41 0.46 16 35 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 36 H 0.10 1.83 6.98 -51.93 -0.36 1.46 16 37 H 0.06 0.92 6.73 -51.93 -0.35 0.57 16 38 H 0.10 1.15 6.34 -51.93 -0.33 0.82 16 39 H 0.13 1.94 6.28 -51.93 -0.33 1.61 16 LS Contribution 333.93 15.07 5.03 5.03 Total: -1.00 -29.95 333.93 -4.76 -34.71 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -5.30 Total: -2.57 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -0.73 Total: 0.49 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: 1.20 Total: -49.85 kcal Atomic # 8 Polarization: -3.30 SS G_CDS: 0.05 Total: -3.24 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.95 -4.76 -34.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132814271.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.136 kcal (2) G-P(sol) polarization free energy of solvation -29.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds