Wall clock time and date at job start Tue Mar 31 2020 00:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47009 * 2 1 4 4 C 1.50695 * 109.47080 * 119.99954 * 2 1 3 5 5 N 1.30270 * 126.28526 * 299.97902 * 4 2 1 6 6 N 1.28669 * 109.38554 * 180.02562 * 5 4 2 7 7 C 1.30272 * 109.37870 * 359.97438 * 6 5 4 8 8 C 1.50703 * 126.28276 * 179.97438 * 7 6 5 9 9 N 1.46900 * 109.46887 * 90.03072 * 8 7 6 10 10 C 1.46895 * 110.99920 * 190.00148 * 9 8 7 11 11 C 1.50702 * 109.47314 * 168.98741 * 10 9 8 12 12 H 1.08006 * 119.99796 * 354.95784 * 11 10 9 13 13 C 1.37876 * 120.00432 * 174.95546 * 11 10 9 14 14 N 1.31513 * 119.99556 * 0.02562 * 13 11 10 15 15 Si 1.86791 * 120.00328 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47069 * 90.00311 * 15 13 11 17 17 H 1.48501 * 109.47477 * 210.00330 * 15 13 11 18 18 H 1.48500 * 109.47564 * 330.00457 * 15 13 11 19 19 C 1.46896 * 111.00483 * 66.04373 * 9 8 7 20 20 C 1.53002 * 109.47087 * 62.04889 * 19 9 8 21 21 C 1.47199 * 109.47448 * 179.59916 * 20 19 9 22 22 N 6.48314 * 101.24808 * 190.70222 * 2 1 3 23 23 O 1.34365 * 107.43668 * 0.24555 * 7 6 5 24 24 H 1.08994 * 109.47546 * 300.00062 * 1 2 3 25 25 H 1.09008 * 109.46810 * 60.00125 * 1 2 3 26 26 H 1.08994 * 109.47192 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47061 * 240.00438 * 2 1 3 28 28 H 1.09000 * 109.46851 * 60.00310 * 3 2 1 29 29 H 1.09003 * 109.47037 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47123 * 300.00242 * 3 2 1 31 31 H 1.08994 * 109.47041 * 330.02595 * 8 7 6 32 32 H 1.09002 * 109.47180 * 210.02737 * 8 7 6 33 33 H 1.08996 * 109.47314 * 288.98743 * 10 9 8 34 34 H 1.09000 * 109.47407 * 48.98906 * 10 9 8 35 35 H 0.97000 * 120.00022 * 179.97438 * 14 13 11 36 36 H 1.09000 * 109.47345 * 182.04948 * 19 9 8 37 37 H 1.09004 * 109.47056 * 302.05219 * 19 9 8 38 38 H 1.09003 * 109.46940 * 299.59990 * 20 19 9 39 39 H 1.08996 * 109.46965 * 59.59584 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7946 -0.3735 2.4662 6 7 2.3816 -1.2030 3.2554 7 6 3.0134 -2.0976 2.5500 8 6 3.8266 -3.2465 3.0884 9 7 2.9602 -4.4197 3.2642 10 6 3.6553 -5.4813 4.0042 11 6 2.6667 -6.5477 4.4001 12 1 1.6143 -6.4090 4.2011 13 6 3.1058 -7.7003 5.0163 14 7 4.3873 -7.8689 5.2590 15 14 1.8805 -9.0217 5.5076 16 1 1.7114 -9.9814 4.3869 17 1 2.3830 -9.7424 6.7048 18 1 0.5727 -8.3922 5.8216 19 6 2.4729 -4.9131 1.9692 20 6 3.6606 -5.3570 1.1129 21 6 3.1717 -5.8604 -0.1811 22 7 2.7946 -6.2480 -1.1808 23 8 2.8118 -1.8046 1.2543 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 4.2589 -2.9668 4.0491 32 1 4.6254 -3.4866 2.3867 33 1 4.4280 -5.9188 3.3722 34 1 4.1133 -5.0602 4.8993 35 1 4.6963 -8.6796 5.6928 36 1 1.8050 -5.7592 2.1307 37 1 1.9331 -4.1167 1.4568 38 1 4.3248 -4.5091 0.9454 39 1 4.2046 -6.1483 1.6285 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132814271.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:26 Heat of formation + Delta-G solvation = 37.565868 kcal Electronic energy + Delta-G solvation = -21525.978070 eV Core-core repulsion = 18276.855547 eV Total energy + Delta-G solvation = -3249.122523 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -45.22076 -39.51537 -37.43767 -37.16007 -36.80384 -34.74451 -32.71733 -31.50444 -29.28968 -28.13236 -27.20159 -25.52959 -25.28671 -23.57672 -21.88779 -21.48265 -19.02806 -18.47685 -18.24036 -18.09318 -16.91079 -16.55037 -16.31723 -16.06880 -15.57741 -15.33259 -15.13384 -14.76967 -14.20165 -14.14091 -13.70943 -13.55129 -13.44676 -13.22374 -13.05783 -12.98740 -12.92821 -12.91207 -12.70616 -12.63067 -12.47973 -12.28676 -12.26668 -11.98682 -11.71521 -11.64804 -11.31749 -10.57195 -10.49221 -9.12993 -8.14639 -6.20220 0.16487 1.23971 1.38896 1.44001 1.47745 1.56044 1.70736 1.75737 2.44685 2.79784 2.91471 3.20917 3.36116 3.44384 3.73844 4.00672 4.02942 4.07442 4.09942 4.20637 4.27578 4.44806 4.52996 4.61259 4.69386 4.76569 4.76718 4.87127 4.88770 5.03100 5.06391 5.28230 5.32022 5.33495 5.33955 5.70305 6.06459 6.16143 6.48734 6.55220 6.93215 7.34012 7.48210 8.94808 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.020162 B = 0.004425 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.416649 B = 6326.372766 C = 6935.779342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.003 3.997 3 C -0.140 4.140 4 C 0.166 3.834 5 N -0.316 5.316 6 N -0.309 5.309 7 C 0.185 3.815 8 C 0.140 3.860 9 N -0.534 5.534 10 C 0.202 3.798 11 C -0.519 4.519 12 H 0.056 0.944 13 C 0.017 3.983 14 N -0.923 5.923 15 Si 0.947 3.053 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.273 1.273 19 C 0.074 3.926 20 C -0.061 4.061 21 C 0.243 3.757 22 N -0.490 5.490 23 O -0.227 6.227 24 H 0.058 0.942 25 H 0.105 0.895 26 H 0.049 0.951 27 H 0.119 0.881 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.124 0.876 32 H 0.099 0.901 33 H 0.014 0.986 34 H 0.020 0.980 35 H 0.263 0.737 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.132 0.868 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.938 15.133 -11.417 18.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.017 4.017 3 C -0.197 4.197 4 C -0.046 4.046 5 N -0.161 5.161 6 N -0.156 5.156 7 C -0.028 4.028 8 C 0.012 3.988 9 N -0.258 5.258 10 C 0.077 3.923 11 C -0.558 4.558 12 H 0.074 0.926 13 C -0.182 4.182 14 N -0.563 5.563 15 Si 0.774 3.226 16 H -0.204 1.204 17 H -0.211 1.211 18 H -0.198 1.198 19 C -0.056 4.056 20 C -0.102 4.102 21 C -0.073 4.073 22 N -0.168 5.168 23 O -0.106 6.106 24 H 0.077 0.923 25 H 0.123 0.877 26 H 0.068 0.932 27 H 0.138 0.862 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.122 0.878 31 H 0.142 0.858 32 H 0.116 0.884 33 H 0.032 0.968 34 H 0.038 0.962 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.149 0.851 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.238 15.234 -11.479 19.205 hybrid contribution 0.706 -1.801 -0.234 1.948 sum -1.532 13.433 -11.713 17.888 Atomic orbital electron populations 1.21879 0.91182 1.02635 1.04373 1.20085 0.97417 0.95945 0.88285 1.21866 1.01428 0.92108 1.04332 1.28898 0.91414 0.85304 0.98959 1.74266 1.20278 1.22146 0.99419 1.74364 1.10094 1.03296 1.27806 1.28168 0.98819 0.99052 0.76724 1.20754 0.91280 0.84165 1.02649 1.62193 1.39423 1.06921 1.17294 1.19602 0.92893 0.87206 0.92594 1.21372 0.94360 1.01739 1.38279 0.92584 1.25539 0.96500 1.00088 0.96064 1.69996 1.14624 1.28038 1.43665 0.85714 0.79630 0.79522 0.77743 1.20382 1.21111 1.19760 1.21976 0.95770 1.00189 0.87651 1.20143 1.00988 1.03890 0.85191 1.29301 0.92120 0.91806 0.94116 1.81195 1.10648 1.11195 1.13804 1.84812 1.54801 1.40066 1.30948 0.92306 0.87658 0.93179 0.86250 0.92342 0.92332 0.87783 0.85795 0.88372 0.96845 0.96194 0.92761 0.90463 0.91583 0.85051 0.86247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.18 71.98 0.66 -1.40 16 2 C 0.00 0.04 3.39 -11.54 -0.04 0.00 16 3 C -0.14 -1.72 9.18 71.98 0.66 -1.06 16 4 C 0.17 4.24 6.99 88.34 0.62 4.86 16 5 N -0.32 -10.05 12.22 -165.50 -2.02 -12.07 16 6 N -0.31 -10.83 12.22 -165.50 -2.02 -12.85 16 7 C 0.18 5.58 7.03 88.34 0.62 6.20 16 8 C 0.14 3.94 5.38 85.56 0.46 4.40 16 9 N -0.53 -18.79 4.68 -905.38 -4.24 -23.03 16 10 C 0.20 8.62 4.53 85.56 0.39 9.01 16 11 C -0.52 -25.91 8.40 25.60 0.21 -25.70 16 12 H 0.06 2.86 7.38 -2.91 -0.02 2.83 16 13 C 0.02 0.89 5.46 84.65 0.46 1.36 16 14 N -0.92 -49.80 13.29 21.45 0.28 -49.52 16 15 Si 0.95 41.94 29.54 68.60 2.03 43.97 16 16 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 17 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 19 C 0.07 2.34 4.94 86.30 0.43 2.77 16 20 C -0.06 -1.59 5.05 28.79 0.15 -1.44 16 21 C 0.24 7.23 15.44 89.43 1.38 8.61 16 22 N -0.49 -16.72 18.54 20.01 0.37 -16.35 16 23 O -0.23 -6.13 10.24 -3.72 -0.04 -6.16 16 24 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 26 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 30 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.12 3.44 7.92 -2.39 -0.02 3.42 16 32 H 0.10 2.11 6.07 -2.39 -0.01 2.09 16 33 H 0.01 0.58 6.01 -2.39 -0.01 0.57 16 34 H 0.02 0.93 7.91 -2.39 -0.02 0.91 16 35 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16 36 H 0.08 2.80 6.98 -2.39 -0.02 2.78 16 37 H 0.07 1.98 6.73 -2.38 -0.02 1.97 16 38 H 0.13 2.60 6.34 -2.39 -0.02 2.59 16 39 H 0.12 3.45 6.28 -2.39 -0.01 3.44 16 Total: -1.00 -64.55 333.93 1.42 -63.13 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: 1.06 Total: 5.28 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 6.00 Total: 7.60 kcal Atomic # 7 Polarization: -106.19 SS G_CDS: -7.63 Total: -113.82 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.04 Total: -6.16 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -64.55 1.42 -63.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132814271.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.699 kcal (2) G-P(sol) polarization free energy of solvation -64.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds