Wall clock time and date at job start Tue Mar 31 2020 00:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.50705 * 109.47164 * 239.99931 * 2 1 3 5 5 N 1.31130 * 126.54488 * 240.00143 * 4 2 1 6 6 C 1.34495 * 105.60956 * 179.97438 * 5 4 2 7 7 C 1.50706 * 126.28827 * 179.97438 * 6 5 4 8 8 N 1.46896 * 109.46914 * 89.99992 * 7 6 5 9 9 C 1.46903 * 111.00186 * 190.00175 * 8 7 6 10 10 C 1.50695 * 109.47254 * 168.99613 * 9 8 7 11 11 H 1.08004 * 120.00050 * 354.95531 * 10 9 8 12 12 C 1.37877 * 120.00033 * 174.95723 * 10 9 8 13 13 N 1.31516 * 120.00037 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00215 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47064 * 0.02562 * 14 12 10 16 16 H 1.48494 * 109.47259 * 120.00238 * 14 12 10 17 17 H 1.48505 * 109.47198 * 240.00411 * 14 12 10 18 18 C 1.46904 * 110.99951 * 66.04867 * 8 7 6 19 19 C 1.53002 * 109.47143 * 62.03823 * 18 8 7 20 20 C 1.47196 * 109.47171 * 179.60259 * 19 18 8 21 21 N 8.28997 * 84.90504 * 245.55045 * 2 1 3 22 22 N 1.29941 * 107.42633 * 0.02562 * 6 5 4 23 23 O 1.21307 * 110.25005 * 359.70396 * 22 6 5 24 24 H 1.08997 * 109.47307 * 300.00159 * 1 2 3 25 25 H 1.08997 * 109.47114 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46909 * 60.00212 * 1 2 3 27 27 H 1.08997 * 109.46909 * 119.99788 * 2 1 3 28 28 H 1.09006 * 109.47296 * 59.99599 * 3 2 1 29 29 H 1.08997 * 109.47279 * 179.97438 * 3 2 1 30 30 H 1.09006 * 109.46769 * 299.99929 * 3 2 1 31 31 H 1.08997 * 109.47265 * 210.00279 * 7 6 5 32 32 H 1.09002 * 109.46844 * 330.00169 * 7 6 5 33 33 H 1.09008 * 109.46699 * 288.99528 * 9 8 7 34 34 H 1.08995 * 109.46639 * 48.99331 * 9 8 7 35 35 H 0.96999 * 119.99889 * 179.97438 * 13 12 10 36 36 H 1.09000 * 109.47463 * 182.03908 * 18 8 7 37 37 H 1.08997 * 109.46892 * 302.03900 * 18 8 7 38 38 H 1.08997 * 109.46956 * 299.60019 * 19 18 8 39 39 H 1.08998 * 109.47372 * 59.59984 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 7 2.7893 -1.7809 -1.2598 6 6 2.9810 -2.0530 -2.5629 7 6 3.7882 -3.1941 -3.1264 8 7 2.9200 -4.3649 -3.3087 9 6 3.7098 -5.5612 -3.6296 10 6 2.8303 -6.7818 -3.5435 11 1 1.8110 -6.6897 -3.1985 12 6 3.3268 -8.0162 -3.9050 13 7 4.5682 -8.1285 -4.3246 14 14 2.2369 -9.5294 -3.7976 15 1 0.8939 -9.1377 -3.2993 16 1 2.1055 -10.1414 -5.1442 17 1 2.8444 -10.5119 -2.8644 18 6 1.9049 -4.1120 -4.3401 19 6 2.5942 -3.8514 -5.6810 20 6 1.5768 -3.6075 -6.7165 21 7 0.7938 -3.4176 -7.5168 22 7 2.3433 -1.1507 -3.2468 23 8 1.7871 -0.3731 -2.5000 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9564 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 4.2097 -2.9009 -4.0879 32 1 4.5948 -3.4437 -2.4371 33 1 4.1100 -5.4722 -4.6396 34 1 4.5318 -5.6548 -2.9200 35 1 4.9176 -8.9970 -4.5786 36 1 1.2533 -4.9812 -4.4295 37 1 1.3124 -3.2409 -4.0608 38 1 3.2403 -2.9780 -5.5937 39 1 3.1924 -4.7198 -5.9569 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132828209.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:17 Heat of formation + Delta-G solvation = 92.059319 kcal Electronic energy + Delta-G solvation = -21455.468948 eV Core-core repulsion = 18208.709438 eV Total energy + Delta-G solvation = -3246.759510 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.42617 -38.11129 -36.42922 -36.08628 -35.17200 -32.74625 -31.50668 -30.48553 -28.17047 -27.55988 -25.82352 -24.30668 -23.94801 -22.81700 -20.70126 -19.66439 -17.96143 -17.46859 -17.17551 -16.31943 -16.01419 -15.29559 -14.87659 -14.62379 -14.33552 -14.00161 -13.69933 -13.62871 -13.28017 -12.61133 -12.57036 -12.37301 -12.09089 -12.06816 -11.97044 -11.76297 -11.64202 -11.50347 -11.34095 -11.24378 -11.13343 -10.80221 -10.76206 -10.69673 -10.28479 -10.01366 -9.74628 -9.36158 -8.53189 -7.54958 -6.12659 -4.14197 1.28806 2.41616 2.87234 3.10533 3.14532 3.27481 3.35952 3.40407 3.71310 4.16974 4.33028 4.39324 4.56071 4.64862 4.78293 4.91867 5.17403 5.24091 5.25604 5.38973 5.42565 5.45728 5.49719 5.56326 5.63019 5.80474 5.84079 5.84930 5.88730 6.01760 6.19488 6.21906 6.54332 7.01830 7.11727 7.63967 7.79390 7.93291 7.97009 8.32913 8.36359 8.93353 9.51122 10.97717 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.017539 B = 0.004483 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.101132 B = 6244.152319 C = 7031.847702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.002 3.998 3 C -0.150 4.150 4 C 0.171 3.829 5 N -0.464 5.464 6 C 0.194 3.806 7 C 0.132 3.868 8 N -0.520 5.520 9 C 0.188 3.812 10 C -0.510 4.510 11 H 0.065 0.935 12 C 0.059 3.941 13 N -0.896 5.896 14 Si 0.896 3.104 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.283 1.283 18 C 0.071 3.929 19 C -0.072 4.072 20 C 0.227 3.773 21 N -0.460 5.460 22 N -0.387 5.387 23 O 0.073 5.927 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.115 0.885 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.009 0.991 34 H 0.035 0.965 35 H 0.262 0.738 36 H 0.096 0.904 37 H 0.059 0.941 38 H 0.099 0.901 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.845 17.009 8.327 19.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 C -0.208 4.208 4 C -0.050 4.050 5 N -0.197 5.197 6 C -0.079 4.079 7 C 0.003 3.997 8 N -0.244 5.244 9 C 0.064 3.936 10 C -0.548 4.548 11 H 0.083 0.917 12 C -0.143 4.143 13 N -0.535 5.535 14 Si 0.724 3.276 15 H -0.196 1.196 16 H -0.211 1.211 17 H -0.209 1.209 18 C -0.060 4.060 19 C -0.114 4.114 20 C -0.091 4.091 21 N -0.138 5.138 22 N -0.096 5.096 23 O 0.015 5.985 24 H 0.094 0.906 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.133 0.867 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.123 0.877 33 H 0.027 0.973 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.114 0.886 37 H 0.078 0.922 38 H 0.117 0.883 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.868 16.722 6.813 18.466 hybrid contribution 0.232 -0.829 -0.344 0.927 sum -3.636 15.893 6.469 17.540 Atomic orbital electron populations 1.21911 0.92340 1.03360 1.03338 1.19787 0.96913 0.95625 0.89495 1.21906 1.01882 0.93624 1.03393 1.28795 0.94733 0.92705 0.88773 1.71927 1.16305 1.12039 1.19433 1.25921 0.98841 0.97639 0.85549 1.20454 0.93373 0.86299 0.99612 1.62377 1.15758 1.02569 1.43657 1.19923 0.93083 0.84923 0.95720 1.21117 0.98978 0.91066 1.43658 0.91658 1.24938 0.95122 0.99048 0.95150 1.69941 1.14341 1.24617 1.44616 0.86470 0.80773 0.82763 0.77643 1.19624 1.21091 1.20938 1.22073 0.95637 1.02150 0.86094 1.20180 0.94445 1.04839 0.91914 1.29142 0.94030 0.92262 0.93634 1.81106 1.11065 1.10134 1.11451 1.74658 1.12729 1.04784 1.17381 1.85234 1.54238 1.43510 1.15516 0.90628 0.91617 0.91558 0.86706 0.90632 0.91864 0.91551 0.92177 0.87731 0.97316 0.94690 0.92823 0.88601 0.92208 0.88344 0.85811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.18 37.16 0.34 -0.70 16 2 C 0.00 0.02 3.39 -91.77 -0.31 -0.29 16 3 C -0.15 -0.90 9.18 37.16 0.34 -0.56 16 4 C 0.17 2.16 7.02 -13.06 -0.09 2.06 16 5 N -0.46 -7.29 11.55 -9.87 -0.11 -7.41 16 6 C 0.19 3.17 6.84 -156.37 -1.07 2.10 16 7 C 0.13 2.18 5.38 -4.98 -0.03 2.16 16 8 N -0.52 -10.07 4.69 -237.51 -1.11 -11.18 16 9 C 0.19 4.27 4.53 -4.98 -0.02 4.25 16 10 C -0.51 -13.16 8.40 -34.44 -0.29 -13.45 16 11 H 0.07 1.71 7.38 -52.48 -0.39 1.32 16 12 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 13 N -0.90 -24.84 13.29 55.43 0.74 -24.10 16 14 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 15 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 18 C 0.07 1.27 4.94 -3.82 -0.02 1.26 16 19 C -0.07 -1.16 5.05 -29.52 -0.15 -1.31 16 20 C 0.23 3.96 15.43 -20.78 -0.32 3.64 16 21 N -0.46 -8.85 18.53 42.14 0.78 -8.07 16 22 N -0.39 -6.13 11.39 30.90 0.35 -5.78 16 23 O 0.07 1.01 11.31 18.13 0.20 1.22 16 24 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.89 6.07 -51.93 -0.32 0.58 16 32 H 0.10 1.69 7.92 -51.93 -0.41 1.28 16 33 H 0.01 0.21 6.01 -51.92 -0.31 -0.10 16 34 H 0.04 0.85 7.91 -51.93 -0.41 0.44 16 35 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 36 H 0.10 1.89 6.98 -51.93 -0.36 1.53 16 37 H 0.06 1.06 6.64 -51.93 -0.34 0.72 16 38 H 0.10 1.40 6.34 -51.93 -0.33 1.08 16 39 H 0.12 2.12 6.28 -51.93 -0.33 1.79 16 LS Contribution 333.22 15.07 5.02 5.02 Total: -1.00 -30.36 333.22 -6.16 -36.52 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -5.29 Total: -2.71 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -1.71 Total: 0.64 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: 0.64 Total: -56.53 kcal Atomic # 8 Polarization: 1.01 SS G_CDS: 0.20 Total: 1.22 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.36 -6.16 -36.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132828209.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.582 kcal (2) G-P(sol) polarization free energy of solvation -30.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds