Wall clock time and date at job start Tue Mar 31 2020 00:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.50705 * 109.47164 * 239.99931 * 2 1 3 5 5 N 1.31130 * 126.54488 * 240.00143 * 4 2 1 6 6 C 1.34495 * 105.60956 * 179.97438 * 5 4 2 7 7 C 1.50706 * 126.28827 * 179.97438 * 6 5 4 8 8 N 1.46896 * 109.46914 * 89.99992 * 7 6 5 9 9 C 1.46903 * 111.00186 * 190.00175 * 8 7 6 10 10 C 1.50695 * 109.47254 * 168.99613 * 9 8 7 11 11 H 1.08004 * 120.00050 * 354.95531 * 10 9 8 12 12 C 1.37877 * 120.00033 * 174.95723 * 10 9 8 13 13 N 1.31516 * 120.00037 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00215 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47064 * 0.02562 * 14 12 10 16 16 H 1.48494 * 109.47259 * 120.00238 * 14 12 10 17 17 H 1.48505 * 109.47198 * 240.00411 * 14 12 10 18 18 C 1.46904 * 110.99951 * 66.04867 * 8 7 6 19 19 C 1.53002 * 109.47143 * 62.03823 * 18 8 7 20 20 C 1.47196 * 109.47171 * 179.60259 * 19 18 8 21 21 N 8.28997 * 84.90504 * 245.55045 * 2 1 3 22 22 N 1.29941 * 107.42633 * 0.02562 * 6 5 4 23 23 O 1.21307 * 110.25005 * 359.70396 * 22 6 5 24 24 H 1.08997 * 109.47307 * 300.00159 * 1 2 3 25 25 H 1.08997 * 109.47114 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46909 * 60.00212 * 1 2 3 27 27 H 1.08997 * 109.46909 * 119.99788 * 2 1 3 28 28 H 1.09006 * 109.47296 * 59.99599 * 3 2 1 29 29 H 1.08997 * 109.47279 * 179.97438 * 3 2 1 30 30 H 1.09006 * 109.46769 * 299.99929 * 3 2 1 31 31 H 1.08997 * 109.47265 * 210.00279 * 7 6 5 32 32 H 1.09002 * 109.46844 * 330.00169 * 7 6 5 33 33 H 1.09008 * 109.46699 * 288.99528 * 9 8 7 34 34 H 1.08995 * 109.46639 * 48.99331 * 9 8 7 35 35 H 0.96999 * 119.99889 * 179.97438 * 13 12 10 36 36 H 1.09000 * 109.47463 * 182.03908 * 18 8 7 37 37 H 1.08997 * 109.46892 * 302.03900 * 18 8 7 38 38 H 1.08997 * 109.46956 * 299.60019 * 19 18 8 39 39 H 1.08998 * 109.47372 * 59.59984 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 7 2.7893 -1.7809 -1.2598 6 6 2.9810 -2.0530 -2.5629 7 6 3.7882 -3.1941 -3.1264 8 7 2.9200 -4.3649 -3.3087 9 6 3.7098 -5.5612 -3.6296 10 6 2.8303 -6.7818 -3.5435 11 1 1.8110 -6.6897 -3.1985 12 6 3.3268 -8.0162 -3.9050 13 7 4.5682 -8.1285 -4.3246 14 14 2.2369 -9.5294 -3.7976 15 1 0.8939 -9.1377 -3.2993 16 1 2.1055 -10.1414 -5.1442 17 1 2.8444 -10.5119 -2.8644 18 6 1.9049 -4.1120 -4.3401 19 6 2.5942 -3.8514 -5.6810 20 6 1.5768 -3.6075 -6.7165 21 7 0.7938 -3.4176 -7.5168 22 7 2.3433 -1.1507 -3.2468 23 8 1.7871 -0.3731 -2.5000 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9564 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 4.2097 -2.9009 -4.0879 32 1 4.5948 -3.4437 -2.4371 33 1 4.1100 -5.4722 -4.6396 34 1 4.5318 -5.6548 -2.9200 35 1 4.9176 -8.9970 -4.5786 36 1 1.2533 -4.9812 -4.4295 37 1 1.3124 -3.2409 -4.0608 38 1 3.2403 -2.9780 -5.5937 39 1 3.1924 -4.7198 -5.9569 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132828209.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:17 Heat of formation + Delta-G solvation = 71.453027 kcal Electronic energy + Delta-G solvation = -21456.362503 eV Core-core repulsion = 18208.709438 eV Total energy + Delta-G solvation = -3247.653066 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -46.57623 -39.60793 -37.54644 -37.21385 -36.34350 -34.68777 -32.62909 -31.94149 -29.81683 -28.05542 -27.40714 -25.63437 -25.16881 -24.11602 -22.04118 -20.85919 -19.13596 -18.93181 -18.39319 -18.12227 -16.98506 -16.76840 -16.44112 -15.88637 -15.61717 -15.34703 -15.07114 -14.66435 -14.20844 -14.14725 -13.80414 -13.62682 -13.49029 -13.14174 -13.02787 -13.00741 -12.95558 -12.65851 -12.61974 -12.49117 -12.48017 -12.14073 -12.05966 -11.99450 -11.83046 -11.65498 -11.30841 -10.86805 -10.55278 -9.12263 -8.16003 -6.22441 0.20930 1.22615 1.42191 1.45922 1.56038 1.66628 1.71619 1.92053 2.43095 2.64852 2.88079 3.06140 3.18977 3.43342 3.84973 3.96117 4.02302 4.07685 4.09926 4.24963 4.38909 4.47696 4.62211 4.71950 4.78246 4.82576 4.90686 4.95793 5.01612 5.08904 5.14954 5.29389 5.31651 5.36138 5.38201 5.69325 6.05486 6.17102 6.47869 6.52159 6.91407 7.23730 7.46177 8.93951 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.017539 B = 0.004483 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.101132 B = 6244.152319 C = 7031.847702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.001 3.999 3 C -0.145 4.145 4 C 0.187 3.813 5 N -0.497 5.497 6 C 0.181 3.819 7 C 0.135 3.865 8 N -0.529 5.529 9 C 0.202 3.798 10 C -0.518 4.518 11 H 0.057 0.943 12 C 0.015 3.985 13 N -0.925 5.925 14 Si 0.951 3.049 15 H -0.270 1.270 16 H -0.283 1.283 17 H -0.281 1.281 18 C 0.078 3.922 19 C -0.059 4.059 20 C 0.244 3.756 21 N -0.488 5.488 22 N -0.398 5.398 23 O 0.075 5.925 24 H 0.104 0.896 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.123 0.877 28 H 0.102 0.898 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.006 0.994 34 H 0.016 0.984 35 H 0.263 0.737 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.123 0.877 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.533 18.371 9.214 20.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.019 4.019 3 C -0.203 4.203 4 C -0.034 4.034 5 N -0.230 5.230 6 C -0.092 4.092 7 C 0.006 3.994 8 N -0.253 5.253 9 C 0.077 3.923 10 C -0.556 4.556 11 H 0.075 0.925 12 C -0.184 4.184 13 N -0.565 5.565 14 Si 0.778 3.222 15 H -0.194 1.194 16 H -0.209 1.209 17 H -0.206 1.206 18 C -0.052 4.052 19 C -0.100 4.100 20 C -0.073 4.073 21 N -0.166 5.166 22 N -0.107 5.107 23 O 0.017 5.983 24 H 0.123 0.877 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.141 0.859 28 H 0.121 0.879 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.122 0.878 33 H 0.024 0.976 34 H 0.034 0.966 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.141 0.859 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.563 18.098 7.711 20.194 hybrid contribution 0.414 -1.150 -0.530 1.333 sum -4.149 16.947 7.181 18.868 Atomic orbital electron populations 1.21929 0.91134 1.02774 1.04808 1.20159 0.97757 0.96528 0.87458 1.21915 1.01504 0.92114 1.04788 1.29723 0.92772 0.91583 0.89284 1.71919 1.18037 1.13720 1.19311 1.25808 0.99433 0.97885 0.86049 1.20421 0.92991 0.85396 1.00641 1.62181 1.16085 1.02822 1.44238 1.19584 0.92254 0.85613 0.94883 1.21392 0.98917 0.92395 1.42910 0.92507 1.25606 0.96170 1.01545 0.95115 1.70024 1.15601 1.25222 1.45695 0.85600 0.79286 0.79790 0.77558 1.19414 1.20867 1.20639 1.21914 0.95153 1.01347 0.86764 1.20088 0.93992 1.05566 0.90373 1.29235 0.93539 0.91325 0.93199 1.81122 1.11884 1.11261 1.12375 1.74624 1.12999 1.04991 1.18077 1.85204 1.53950 1.43093 1.16048 0.87722 0.93198 0.91577 0.85919 0.87881 0.92468 0.91539 0.90329 0.87776 0.97610 0.96597 0.92752 0.90639 0.91724 0.85925 0.86471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.18 71.98 0.66 -1.02 16 2 C 0.00 0.02 3.39 -11.54 -0.04 -0.02 16 3 C -0.15 -1.35 9.18 71.98 0.66 -0.69 16 4 C 0.19 4.47 7.02 88.38 0.62 5.09 16 5 N -0.50 -15.27 11.55 -303.21 -3.50 -18.78 16 6 C 0.18 5.80 6.84 138.47 0.95 6.74 16 7 C 0.13 4.37 5.38 85.56 0.46 4.83 16 8 N -0.53 -20.46 4.69 -905.35 -4.24 -24.70 16 9 C 0.20 9.27 4.53 85.55 0.39 9.66 16 10 C -0.52 -26.90 8.40 25.60 0.21 -26.69 16 11 H 0.06 3.00 7.38 -2.91 -0.02 2.98 16 12 C 0.01 0.78 5.46 84.65 0.46 1.24 16 13 N -0.92 -51.50 13.29 21.45 0.28 -51.22 16 14 Si 0.95 42.80 29.54 68.60 2.03 44.83 16 15 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 16 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 17 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 18 C 0.08 2.79 4.94 86.30 0.43 3.22 16 19 C -0.06 -1.83 5.05 28.79 0.15 -1.68 16 20 C 0.24 8.29 15.43 89.45 1.38 9.67 16 21 N -0.49 -18.43 18.53 20.00 0.37 -18.05 16 22 N -0.40 -12.17 11.39 -60.34 -0.69 -12.86 16 23 O 0.08 2.00 11.31 74.94 0.85 2.85 16 24 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.10 0.44 8.14 -2.38 -0.02 0.42 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.08 2.23 6.07 -2.39 -0.01 2.22 16 32 H 0.10 3.36 7.92 -2.39 -0.02 3.34 16 33 H 0.01 0.29 6.01 -2.38 -0.01 0.27 16 34 H 0.02 0.79 7.91 -2.39 -0.02 0.77 16 35 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 36 H 0.08 2.99 6.98 -2.39 -0.02 2.98 16 37 H 0.06 2.25 6.64 -2.39 -0.02 2.24 16 38 H 0.12 3.27 6.34 -2.39 -0.02 3.25 16 39 H 0.12 3.93 6.28 -2.39 -0.01 3.92 16 Total: -1.00 -64.47 333.22 2.49 -61.98 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: 1.06 Total: 5.60 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 6.33 Total: 10.35 kcal Atomic # 7 Polarization: -117.83 SS G_CDS: -7.78 Total: -125.61 kcal Atomic # 8 Polarization: 2.00 SS G_CDS: 0.85 Total: 2.85 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -64.47 2.49 -61.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132828209.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.435 kcal (2) G-P(sol) polarization free energy of solvation -64.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds