Wall clock time and date at job start Tue Mar 31 2020 00:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46858 * 2 1 4 4 C 1.50704 * 109.47166 * 180.02562 * 3 2 1 5 5 N 1.31129 * 126.55305 * 89.70843 * 4 3 2 6 6 C 1.34492 * 105.61461 * 179.97438 * 5 4 3 7 7 C 1.50703 * 126.28505 * 180.13053 * 6 5 4 8 8 N 1.46903 * 109.46936 * 270.23323 * 7 6 5 9 9 C 1.46907 * 110.99603 * 190.00202 * 8 7 6 10 10 C 1.50705 * 109.46606 * 168.99208 * 9 8 7 11 11 H 1.07998 * 120.00143 * 354.95653 * 10 9 8 12 12 C 1.37877 * 119.99868 * 174.95914 * 10 9 8 13 13 N 1.31519 * 119.99678 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00133 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46979 * 89.99839 * 14 12 10 16 16 H 1.48493 * 109.47284 * 210.00191 * 14 12 10 17 17 H 1.48502 * 109.47238 * 330.00241 * 14 12 10 18 18 C 1.46896 * 110.99907 * 66.05222 * 8 7 6 19 19 C 1.52995 * 109.47402 * 62.03404 * 18 8 7 20 20 C 1.47198 * 109.46955 * 179.59892 * 19 18 8 21 21 N 6.27799 * 118.30417 * 258.16607 * 2 1 3 22 22 N 1.29948 * 107.42478 * 0.34742 * 6 5 4 23 23 O 1.21294 * 110.25193 * 359.78183 * 22 6 5 24 24 H 1.09005 * 109.46872 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47083 * 300.00031 * 1 2 3 26 26 H 1.09002 * 109.46928 * 60.00024 * 1 2 3 27 27 H 1.08998 * 109.47083 * 239.99969 * 2 1 3 28 28 H 1.08993 * 109.47006 * 119.99943 * 2 1 3 29 29 H 1.08998 * 109.47299 * 60.00101 * 3 2 1 30 30 H 1.09002 * 109.47332 * 299.99728 * 3 2 1 31 31 H 1.08999 * 109.47223 * 30.23578 * 7 6 5 32 32 H 1.09004 * 109.46703 * 150.23723 * 7 6 5 33 33 H 1.08996 * 109.46982 * 288.98558 * 9 8 7 34 34 H 1.08992 * 109.47291 * 48.99303 * 9 8 7 35 35 H 0.97000 * 119.99222 * 180.02562 * 13 12 10 36 36 H 1.08999 * 109.47138 * 182.03742 * 18 8 7 37 37 H 1.09000 * 109.46904 * 302.03462 * 18 8 7 38 38 H 1.08993 * 109.47367 * 299.59645 * 19 18 8 39 39 H 1.09001 * 109.46832 * 59.60169 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 7 4.3275 1.4374 -1.0543 6 6 5.5838 1.4405 -0.5742 7 6 6.8506 1.4395 -1.3906 8 7 7.2608 0.0542 -1.6563 9 6 8.6077 0.0070 -2.2410 10 6 9.1019 -1.4167 -2.2494 11 1 8.5138 -2.1953 -1.7864 12 6 10.3049 -1.7253 -2.8482 13 7 11.0208 -0.7772 -3.4125 14 14 10.9179 -3.4898 -2.8581 15 1 10.4190 -4.1803 -4.0744 16 1 12.4028 -3.4979 -2.8581 17 1 10.4191 -4.1939 -1.6495 18 6 6.2875 -0.6264 -2.5208 19 6 6.2181 0.0880 -3.8719 20 6 5.2499 -0.5998 -4.7415 21 7 4.5067 -1.1335 -5.4099 22 7 5.5047 1.4397 0.7228 23 8 4.3433 1.4408 1.0727 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 6.6744 1.9539 -2.3353 32 1 7.6386 1.9523 -0.8391 33 1 8.5738 0.3858 -3.2625 34 1 9.2833 0.6226 -1.6473 35 1 11.8670 -0.9944 -3.8341 36 1 6.5967 -1.6606 -2.6721 37 1 5.3054 -0.6063 -2.0483 38 1 5.9020 1.1202 -3.7214 39 1 7.2019 0.0740 -4.3412 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132855411.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:20 Heat of formation + Delta-G solvation = 89.207356 kcal Electronic energy + Delta-G solvation = -21401.611193 eV Core-core repulsion = 18154.728013 eV Total energy + Delta-G solvation = -3246.883180 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.42433 -38.11265 -36.21234 -36.01079 -35.05710 -32.74100 -32.16571 -30.44487 -28.28064 -27.82077 -25.79923 -23.92040 -23.40727 -22.29488 -21.18862 -19.82888 -17.95024 -17.59467 -17.10407 -16.32800 -15.65191 -15.39632 -15.15571 -14.72013 -14.29924 -14.04412 -13.74048 -13.70165 -13.30053 -12.89271 -12.38940 -12.33217 -12.03761 -12.02638 -11.96567 -11.77741 -11.62683 -11.49991 -11.29837 -11.10507 -11.03440 -10.85952 -10.78310 -10.63825 -10.26425 -10.04745 -9.69822 -9.36440 -8.52907 -7.54286 -6.12486 -4.14122 1.29787 2.38426 2.88863 3.14496 3.18642 3.28448 3.35514 3.39554 3.73954 4.22519 4.33119 4.41653 4.59671 4.67278 4.77035 4.93129 5.17414 5.22014 5.24118 5.33182 5.40791 5.45390 5.55297 5.63701 5.73995 5.75764 5.79810 5.91790 5.95114 6.03338 6.14938 6.23816 6.57365 7.02620 7.12759 7.63979 7.80559 7.95630 7.97734 8.33099 8.38162 8.93109 9.51124 10.97835 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.018276 B = 0.004435 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.696468 B = 6311.675977 C = 6918.759501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.023 4.023 4 C 0.166 3.834 5 N -0.476 5.476 6 C 0.190 3.810 7 C 0.133 3.867 8 N -0.522 5.522 9 C 0.187 3.813 10 C -0.510 4.510 11 H 0.064 0.936 12 C 0.059 3.941 13 N -0.896 5.896 14 Si 0.896 3.104 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.273 1.273 18 C 0.073 3.927 19 C -0.072 4.072 20 C 0.229 3.771 21 N -0.462 5.462 22 N -0.370 5.370 23 O 0.074 5.926 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.065 0.935 32 H 0.100 0.900 33 H 0.010 0.990 34 H 0.034 0.966 35 H 0.263 0.737 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.101 0.899 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.722 6.685 6.444 19.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.062 4.062 4 C -0.055 4.055 5 N -0.210 5.210 6 C -0.084 4.084 7 C 0.003 3.997 8 N -0.246 5.246 9 C 0.063 3.937 10 C -0.549 4.549 11 H 0.083 0.917 12 C -0.143 4.143 13 N -0.535 5.535 14 Si 0.724 3.276 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.197 1.197 18 C -0.057 4.057 19 C -0.113 4.113 20 C -0.088 4.088 21 N -0.140 5.140 22 N -0.077 5.077 23 O 0.015 5.985 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.117 0.883 30 H 0.125 0.875 31 H 0.083 0.917 32 H 0.118 0.882 33 H 0.027 0.973 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.111 0.889 37 H 0.082 0.918 38 H 0.119 0.881 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.786 5.678 5.905 18.678 hybrid contribution 0.681 -0.275 -0.523 0.902 sum -16.106 5.402 5.381 17.819 Atomic orbital electron populations 1.21743 0.94491 1.02390 1.02130 1.21551 0.96610 0.94446 1.03635 1.20237 0.80539 0.99869 1.05599 1.28739 0.98458 0.97054 0.81225 1.71892 1.00478 1.19781 1.28857 1.25901 0.94939 0.99363 0.88175 1.20439 0.88856 0.93750 0.96675 1.62401 1.04889 1.10846 1.46482 1.19912 0.81718 0.98552 0.93474 1.21080 1.04731 0.93151 1.35944 0.91738 1.24939 0.96611 0.97461 0.95239 1.69936 1.13955 1.32248 1.37375 0.86522 0.77903 0.84689 0.78523 1.20684 1.21209 1.19733 1.22041 0.96007 0.99842 0.87813 1.20169 0.96285 0.99373 0.95504 1.29048 0.93407 0.93180 0.93202 1.80995 1.11742 1.10182 1.11062 1.74661 0.96614 1.20388 1.16063 1.85298 1.11688 1.65722 1.35827 0.92107 0.92331 0.92307 0.90844 0.91076 0.88283 0.87504 0.91734 0.88215 0.97250 0.94839 0.92770 0.88895 0.91848 0.88076 0.86042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.48 16 2 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 3 C -0.02 -0.17 5.84 -27.88 -0.16 -0.33 16 4 C 0.17 1.99 7.77 -13.06 -0.10 1.89 16 5 N -0.48 -6.89 10.78 -9.87 -0.11 -7.00 16 6 C 0.19 3.05 6.83 -156.37 -1.07 1.99 16 7 C 0.13 2.17 5.38 -4.97 -0.03 2.15 16 8 N -0.52 -10.08 4.69 -237.51 -1.11 -11.19 16 9 C 0.19 4.28 4.53 -4.97 -0.02 4.26 16 10 C -0.51 -13.22 8.40 -34.44 -0.29 -13.50 16 11 H 0.06 1.69 7.38 -52.49 -0.39 1.30 16 12 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 13 N -0.90 -24.89 13.29 55.43 0.74 -24.15 16 14 Si 0.90 20.92 29.54 -169.99 -5.02 15.89 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 16 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 C 0.07 1.30 4.94 -3.83 -0.02 1.28 16 19 C -0.07 -1.12 5.05 -29.52 -0.15 -1.27 16 20 C 0.23 3.88 15.42 -20.86 -0.32 3.56 16 21 N -0.46 -8.63 18.52 42.04 0.78 -7.85 16 22 N -0.37 -6.12 12.16 30.90 0.38 -5.74 16 23 O 0.07 1.02 11.31 18.09 0.20 1.23 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.94 6.07 -51.93 -0.32 0.63 16 32 H 0.10 1.62 7.92 -51.93 -0.41 1.21 16 33 H 0.01 0.23 6.01 -51.93 -0.31 -0.09 16 34 H 0.03 0.82 7.91 -51.93 -0.41 0.41 16 35 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.09 1.81 6.98 -51.93 -0.36 1.45 16 37 H 0.06 1.09 6.62 -51.93 -0.34 0.75 16 38 H 0.10 1.40 6.34 -51.93 -0.33 1.07 16 39 H 0.12 2.06 6.28 -51.93 -0.33 1.73 16 LS Contribution 333.85 15.07 5.03 5.03 Total: -1.00 -30.26 333.85 -6.45 -36.71 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -5.29 Total: -2.85 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -2.05 Total: -0.07 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: 0.67 Total: -55.93 kcal Atomic # 8 Polarization: 1.02 SS G_CDS: 0.20 Total: 1.23 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.26 -6.45 -36.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132855411.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.919 kcal (2) G-P(sol) polarization free energy of solvation -30.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds